Wall clock time and date at job start Sat Apr 11 2020 06:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34673 * 117.00259 * 2 1 4 4 O 1.21430 * 119.99835 * 359.97438 * 3 2 1 5 5 C 1.48067 * 119.99951 * 180.02562 * 3 2 1 6 6 C 1.39346 * 119.72522 * 179.97438 * 5 3 2 7 7 C 1.38595 * 119.05676 * 179.74799 * 6 5 3 8 8 C 1.50701 * 120.75721 * 180.23252 * 7 6 5 9 9 N 1.46896 * 109.47262 * 89.99458 * 8 7 6 10 10 C 1.46891 * 111.00097 * 66.04831 * 9 8 7 11 11 C 1.50700 * 109.47170 * 63.61551 * 10 9 8 12 12 H 1.07996 * 119.99925 * 4.56705 * 11 10 9 13 13 C 1.37878 * 119.99929 * 184.57438 * 11 10 9 14 14 N 1.31513 * 120.00301 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 120.00088 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.46910 * 59.99680 * 15 13 11 17 17 H 1.48497 * 109.46818 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46968 * 300.00016 * 15 13 11 19 19 C 1.46900 * 110.99717 * 190.00190 * 9 8 7 20 20 C 1.50699 * 109.47203 * 163.95539 * 19 9 8 21 21 C 1.38679 * 120.41858 * 275.69822 * 20 19 9 22 22 C 1.38623 * 118.42059 * 179.78117 * 21 20 19 23 23 C 1.38230 * 119.15940 * 0.51448 * 22 21 20 24 24 N 1.31851 * 120.76586 * 359.72554 * 23 22 21 25 25 C 1.31880 * 121.72290 * 0.02562 * 24 23 22 26 26 C 1.38620 * 118.48665 * 0.24479 * 7 6 5 27 27 C 1.38585 * 119.36391 * 0.02562 * 26 7 6 28 28 N 1.31509 * 120.90056 * 0.02562 * 27 26 7 29 29 H 1.09005 * 109.47722 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47028 * 300.00679 * 1 2 3 31 31 H 1.08997 * 109.47174 * 60.00259 * 1 2 3 32 32 H 1.07995 * 120.47351 * 0.02562 * 6 5 3 33 33 H 1.09001 * 109.46637 * 209.99822 * 8 7 6 34 34 H 1.09007 * 109.46474 * 329.99400 * 8 7 6 35 35 H 1.09005 * 109.47219 * 183.61399 * 10 9 8 36 36 H 1.09000 * 109.47395 * 303.61434 * 10 9 8 37 37 H 0.97003 * 120.00486 * 180.02562 * 14 13 11 38 38 H 1.09005 * 109.47006 * 283.95688 * 19 9 8 39 39 H 1.09004 * 109.47638 * 43.95145 * 19 9 8 40 40 H 1.07999 * 120.78794 * 0.02562 * 21 20 19 41 41 H 1.08003 * 120.41919 * 180.21901 * 22 21 20 42 42 H 1.07998 * 119.61425 * 179.74497 * 23 22 21 43 43 H 1.08010 * 119.61812 * 180.02562 * 25 24 23 44 44 H 1.08001 * 120.31893 * 179.97438 * 26 7 6 45 45 H 1.07996 * 119.54791 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1999 0.0000 4 8 1.4021 2.2183 -0.0005 5 6 3.5421 1.2773 -0.0006 6 6 4.1688 2.5219 -0.0011 7 6 5.5536 2.5782 0.0037 8 6 6.2710 3.9035 0.0085 9 7 6.4993 4.3317 1.3950 10 6 7.4328 3.4266 2.0786 11 6 8.7787 3.4897 1.4037 12 1 8.9472 4.1907 0.5997 13 6 9.7949 2.6523 1.8126 14 7 9.5898 1.7989 2.7920 15 14 11.4631 2.7300 0.9756 16 1 12.0340 4.0916 1.1351 17 1 12.3749 1.7356 1.5959 18 1 11.3066 2.4252 -0.4694 19 6 6.9794 5.7191 1.4452 20 6 6.8289 6.2524 2.8466 21 6 5.6200 6.7847 3.2693 22 6 5.5263 7.2592 4.5683 23 6 6.6361 7.1965 5.3900 24 7 7.7713 6.6881 4.9526 25 6 7.8953 6.2229 3.7248 26 6 6.2637 1.3877 0.0036 27 6 5.5746 0.1854 -0.0017 28 7 4.2597 0.1606 -0.0072 29 1 -0.3635 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.5838 3.4297 -0.0007 33 1 7.2284 3.8002 -0.5022 34 1 5.6630 4.6476 -0.5061 35 1 7.5344 3.7289 3.1209 36 1 7.0503 2.4070 2.0317 37 1 10.3048 1.2100 3.0799 38 1 8.0297 5.7508 1.1552 39 1 6.3944 6.3312 0.7587 40 1 4.7707 6.8248 2.6034 41 1 4.5993 7.6772 4.9323 42 1 6.5724 7.5679 6.4021 43 1 8.8412 5.8133 3.4022 44 1 7.3437 1.3971 0.0069 45 1 6.1248 -0.7439 -0.0021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232768033.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:32 Heat of formation + Delta-G solvation = -2.252001 kcal Electronic energy + Delta-G solvation = -29129.632787 eV Core-core repulsion = 25112.622788 eV Total energy + Delta-G solvation = -4017.009999 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.69858 -39.81574 -39.46610 -37.06121 -36.44035 -33.27604 -32.82538 -31.78905 -31.37205 -30.82467 -27.93377 -27.51110 -26.56218 -24.60917 -24.17978 -23.15700 -22.86850 -21.87819 -20.75477 -19.89554 -17.74454 -17.20591 -16.73775 -16.47822 -16.39168 -15.89762 -15.85960 -15.61764 -15.06133 -15.04246 -14.66319 -14.47709 -13.91036 -13.74412 -13.56109 -13.31460 -13.19507 -12.87316 -12.64744 -12.52380 -12.23692 -12.20916 -11.81036 -11.47377 -11.27645 -11.06605 -11.03029 -10.93495 -10.82992 -10.71398 -10.43955 -10.20026 -9.88997 -9.43534 -9.33707 -9.31760 -8.99653 -8.96283 -8.58357 -8.52923 -7.42437 -6.17116 -4.28637 0.75993 1.41772 1.56737 1.71171 2.54421 2.62092 3.17883 3.25450 3.27235 3.99775 4.22387 4.27158 4.31182 4.83598 4.89787 4.94824 5.00955 5.08490 5.12779 5.14312 5.17166 5.22977 5.34299 5.36198 5.38838 5.39533 5.53556 5.63939 5.81189 5.86536 5.93315 5.96314 6.14778 6.23139 6.24112 6.29097 6.39058 6.47125 6.69422 6.77351 6.84709 7.01072 7.17202 7.37816 7.60423 7.73996 7.79555 7.98828 8.06805 8.09990 8.41568 8.81293 9.39211 10.87208 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008507 B = 0.003912 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3290.758255 B = 7155.170057 C = 9681.647743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.336 6.336 3 C 0.529 3.471 4 O -0.505 6.505 5 C 0.068 3.932 6 C -0.088 4.088 7 C -0.027 4.027 8 C 0.095 3.905 9 N -0.533 5.533 10 C 0.181 3.819 11 C -0.558 4.558 12 H 0.058 0.942 13 C 0.073 3.927 14 N -0.881 5.881 15 Si 0.883 3.117 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.277 1.277 19 C 0.097 3.903 20 C -0.108 4.108 21 C -0.063 4.063 22 C -0.184 4.184 23 C 0.084 3.916 24 N -0.490 5.490 25 C 0.121 3.879 26 C -0.104 4.104 27 C 0.089 3.911 28 N -0.443 5.443 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.144 0.856 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.032 0.968 36 H 0.039 0.961 37 H 0.265 0.735 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.146 0.854 43 H 0.161 0.839 44 H 0.156 0.844 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.330 2.750 -4.775 12.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.251 6.251 3 C 0.373 3.627 4 O -0.393 6.393 5 C -0.068 4.068 6 C -0.109 4.109 7 C -0.035 4.035 8 C -0.033 4.033 9 N -0.256 5.256 10 C 0.055 3.945 11 C -0.597 4.597 12 H 0.076 0.924 13 C -0.131 4.131 14 N -0.518 5.518 15 Si 0.710 3.290 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.031 4.031 20 C -0.111 4.111 21 C -0.090 4.090 22 C -0.204 4.204 23 C -0.073 4.073 24 N -0.198 5.198 25 C -0.036 4.036 26 C -0.124 4.124 27 C -0.071 4.071 28 N -0.155 5.155 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.162 0.838 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.163 0.837 43 H 0.178 0.822 44 H 0.174 0.826 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -11.692 2.054 -3.852 12.480 hybrid contribution 1.278 0.704 -1.153 1.860 sum -10.414 2.758 -5.005 11.879 Atomic orbital electron populations 1.23299 0.76599 1.03697 1.02445 1.86694 1.22800 1.32084 1.83548 1.20936 0.88111 0.81478 0.72225 1.90823 1.66066 1.36184 1.46212 1.19784 0.90147 0.90429 1.06399 1.21892 0.94839 0.97635 0.96484 1.20225 0.92354 0.96438 0.94525 1.20923 0.98859 0.91385 0.92092 1.62600 1.48533 1.01833 1.12664 1.19891 0.88228 0.91986 0.94353 1.21586 0.97561 1.21056 1.19505 0.92391 1.24903 0.98444 0.95052 0.94728 1.69927 1.33289 1.21720 1.26852 0.86805 0.84317 0.78097 0.79739 1.20156 1.21186 1.20226 1.20867 1.00610 0.90096 0.91504 1.20811 0.94170 0.98097 0.98010 1.21416 0.97069 0.94950 0.95549 1.22020 1.00002 1.03138 0.95264 1.22639 0.88772 0.96406 0.99530 1.67714 1.26203 1.09749 1.16149 1.22928 0.99374 0.93261 0.88064 1.22730 1.03356 0.92366 0.93942 1.22794 0.88919 0.98520 0.96820 1.67534 1.08625 1.30036 1.09337 0.88028 0.91882 0.91951 0.83818 0.91724 0.91264 0.95024 0.94332 0.92519 0.91743 0.91729 0.85374 0.85604 0.83653 0.82163 0.82608 0.81999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.39 16 2 O -0.34 -4.80 10.38 -40.42 -0.42 -5.22 16 3 C 0.53 8.42 7.95 34.76 0.28 8.70 16 4 O -0.51 -8.50 16.11 -19.21 -0.31 -8.81 16 5 C 0.07 1.13 6.75 -83.03 -0.56 0.57 16 6 C -0.09 -1.39 9.34 -39.04 -0.36 -1.76 16 7 C -0.03 -0.44 4.90 -104.35 -0.51 -0.96 16 8 C 0.10 1.54 4.98 -4.98 -0.02 1.51 16 9 N -0.53 -9.77 4.65 -238.97 -1.11 -10.88 16 10 C 0.18 4.05 4.60 -4.98 -0.02 4.03 16 11 C -0.56 -12.99 7.33 -34.44 -0.25 -13.24 16 12 H 0.06 1.32 5.95 -52.49 -0.31 1.01 16 13 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 14 N -0.88 -23.46 13.29 55.43 0.74 -22.73 16 15 Si 0.88 19.36 29.54 -169.99 -5.02 14.34 16 16 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 19 C 0.10 1.61 4.97 -4.98 -0.02 1.59 16 20 C -0.11 -1.83 4.91 -104.48 -0.51 -2.34 16 21 C -0.06 -0.94 9.88 -39.28 -0.39 -1.32 16 22 C -0.18 -2.51 10.11 -39.44 -0.40 -2.91 16 23 C 0.08 1.25 11.18 -17.55 -0.20 1.06 16 24 N -0.49 -8.91 10.36 -13.25 -0.14 -9.05 16 25 C 0.12 2.24 9.72 -17.55 -0.17 2.07 16 26 C -0.10 -1.72 8.06 -39.31 -0.32 -2.04 16 27 C 0.09 1.40 11.18 -17.56 -0.20 1.20 16 28 N -0.44 -7.42 10.12 -9.81 -0.10 -7.52 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.14 2.14 7.64 -52.49 -0.40 1.74 16 33 H 0.06 1.11 6.59 -51.93 -0.34 0.76 16 34 H 0.07 0.95 7.82 -51.93 -0.41 0.54 16 35 H 0.03 0.81 6.66 -51.93 -0.35 0.46 16 36 H 0.04 0.94 5.94 -51.93 -0.31 0.64 16 37 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 38 H 0.06 1.15 6.02 -51.93 -0.31 0.84 16 39 H 0.06 0.90 7.79 -51.93 -0.40 0.50 16 40 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 41 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 42 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 43 H 0.16 3.18 8.06 -52.48 -0.42 2.76 16 44 H 0.16 2.77 8.01 -52.49 -0.42 2.35 16 45 H 0.16 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 383.08 15.07 5.77 5.77 Total: -1.00 -29.25 383.08 -9.05 -38.31 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -5.77 Total: 6.53 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -2.69 Total: -0.74 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: -0.61 Total: -50.17 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.73 Total: -14.03 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.25 -9.05 -38.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232768033.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.053 kcal (2) G-P(sol) polarization free energy of solvation -29.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds