Wall clock time and date at job start Sat Apr 11 2020 06:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34673 * 117.00259 * 2 1 4 4 O 1.21430 * 119.99835 * 359.97438 * 3 2 1 5 5 C 1.48067 * 119.99951 * 180.02562 * 3 2 1 6 6 C 1.39346 * 119.72522 * 179.97438 * 5 3 2 7 7 C 1.38595 * 119.05676 * 179.74799 * 6 5 3 8 8 C 1.50701 * 120.75721 * 180.23252 * 7 6 5 9 9 N 1.46896 * 109.47262 * 89.99458 * 8 7 6 10 10 C 1.46891 * 111.00097 * 66.04831 * 9 8 7 11 11 C 1.50700 * 109.47170 * 63.61551 * 10 9 8 12 12 H 1.07996 * 119.99925 * 4.56705 * 11 10 9 13 13 C 1.37878 * 119.99929 * 184.57438 * 11 10 9 14 14 N 1.31513 * 120.00301 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 120.00088 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.46910 * 59.99680 * 15 13 11 17 17 H 1.48497 * 109.46818 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46968 * 300.00016 * 15 13 11 19 19 C 1.46900 * 110.99717 * 190.00190 * 9 8 7 20 20 C 1.50699 * 109.47203 * 163.95539 * 19 9 8 21 21 C 1.38679 * 120.41858 * 275.69822 * 20 19 9 22 22 C 1.38623 * 118.42059 * 179.78117 * 21 20 19 23 23 C 1.38230 * 119.15940 * 0.51448 * 22 21 20 24 24 N 1.31851 * 120.76586 * 359.72554 * 23 22 21 25 25 C 1.31880 * 121.72290 * 0.02562 * 24 23 22 26 26 C 1.38620 * 118.48665 * 0.24479 * 7 6 5 27 27 C 1.38585 * 119.36391 * 0.02562 * 26 7 6 28 28 N 1.31509 * 120.90056 * 0.02562 * 27 26 7 29 29 H 1.09005 * 109.47722 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47028 * 300.00679 * 1 2 3 31 31 H 1.08997 * 109.47174 * 60.00259 * 1 2 3 32 32 H 1.07995 * 120.47351 * 0.02562 * 6 5 3 33 33 H 1.09001 * 109.46637 * 209.99822 * 8 7 6 34 34 H 1.09007 * 109.46474 * 329.99400 * 8 7 6 35 35 H 1.09005 * 109.47219 * 183.61399 * 10 9 8 36 36 H 1.09000 * 109.47395 * 303.61434 * 10 9 8 37 37 H 0.97003 * 120.00486 * 180.02562 * 14 13 11 38 38 H 1.09005 * 109.47006 * 283.95688 * 19 9 8 39 39 H 1.09004 * 109.47638 * 43.95145 * 19 9 8 40 40 H 1.07999 * 120.78794 * 0.02562 * 21 20 19 41 41 H 1.08003 * 120.41919 * 180.21901 * 22 21 20 42 42 H 1.07998 * 119.61425 * 179.74497 * 23 22 21 43 43 H 1.08010 * 119.61812 * 180.02562 * 25 24 23 44 44 H 1.08001 * 120.31893 * 179.97438 * 26 7 6 45 45 H 1.07996 * 119.54791 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1999 0.0000 4 8 1.4021 2.2183 -0.0005 5 6 3.5421 1.2773 -0.0006 6 6 4.1688 2.5219 -0.0011 7 6 5.5536 2.5782 0.0037 8 6 6.2710 3.9035 0.0085 9 7 6.4993 4.3317 1.3950 10 6 7.4328 3.4266 2.0786 11 6 8.7787 3.4897 1.4037 12 1 8.9472 4.1907 0.5997 13 6 9.7949 2.6523 1.8126 14 7 9.5898 1.7989 2.7920 15 14 11.4631 2.7300 0.9756 16 1 12.0340 4.0916 1.1351 17 1 12.3749 1.7356 1.5959 18 1 11.3066 2.4252 -0.4694 19 6 6.9794 5.7191 1.4452 20 6 6.8289 6.2524 2.8466 21 6 5.6200 6.7847 3.2693 22 6 5.5263 7.2592 4.5683 23 6 6.6361 7.1965 5.3900 24 7 7.7713 6.6881 4.9526 25 6 7.8953 6.2229 3.7248 26 6 6.2637 1.3877 0.0036 27 6 5.5746 0.1854 -0.0017 28 7 4.2597 0.1606 -0.0072 29 1 -0.3635 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.5838 3.4297 -0.0007 33 1 7.2284 3.8002 -0.5022 34 1 5.6630 4.6476 -0.5061 35 1 7.5344 3.7289 3.1209 36 1 7.0503 2.4070 2.0317 37 1 10.3048 1.2100 3.0799 38 1 8.0297 5.7508 1.1552 39 1 6.3944 6.3312 0.7587 40 1 4.7707 6.8248 2.6034 41 1 4.5993 7.6772 4.9323 42 1 6.5724 7.5679 6.4021 43 1 8.8412 5.8133 3.4022 44 1 7.3437 1.3971 0.0069 45 1 6.1248 -0.7439 -0.0021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232768033.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:32 Heat of formation + Delta-G solvation = -19.791333 kcal Electronic energy + Delta-G solvation = -29130.393350 eV Core-core repulsion = 25112.622788 eV Total energy + Delta-G solvation = -4017.770561 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.91000 -41.06807 -40.67929 -38.51119 -37.57834 -34.70286 -34.51017 -33.08553 -32.62349 -32.11360 -29.26233 -28.80371 -27.86432 -26.14235 -25.45791 -24.45857 -24.20436 -23.15754 -21.98857 -21.35572 -19.01064 -18.61726 -18.11339 -17.79240 -17.48796 -17.23042 -17.13726 -16.93346 -16.63308 -16.45042 -16.03682 -15.69673 -15.31173 -14.96736 -14.72960 -14.64262 -14.46439 -14.14025 -14.01683 -13.82062 -13.61942 -13.20007 -13.12052 -12.97173 -12.83083 -12.57793 -12.51526 -12.41287 -12.09821 -11.94461 -11.91084 -11.81964 -11.68538 -10.72336 -10.62824 -10.58262 -10.52162 -10.24993 -10.22039 -9.80618 -9.00008 -8.07849 -6.25307 -0.50692 0.15760 0.33682 0.50562 1.31272 1.41112 1.44584 1.49256 1.55458 2.41884 2.72212 2.96956 3.13943 3.19494 3.55276 3.68844 3.72447 3.85234 3.97146 4.04008 4.08315 4.10545 4.26233 4.28064 4.29907 4.34861 4.37461 4.61937 4.64659 4.69176 4.70911 4.72980 4.88281 4.94650 5.01192 5.03361 5.15590 5.27798 5.32218 5.41080 5.45883 5.53057 5.58562 5.83155 5.93921 6.07461 6.26623 6.43037 6.46249 6.82710 6.94339 7.16614 7.45818 8.94147 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008507 B = 0.003912 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3290.758255 B = 7155.170057 C = 9681.647743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.347 6.347 3 C 0.531 3.469 4 O -0.518 6.518 5 C 0.058 3.942 6 C -0.084 4.084 7 C -0.032 4.032 8 C 0.097 3.903 9 N -0.532 5.532 10 C 0.203 3.797 11 C -0.544 4.544 12 H 0.064 0.936 13 C 0.027 3.973 14 N -0.919 5.919 15 Si 0.938 3.062 16 H -0.277 1.277 17 H -0.293 1.293 18 H -0.265 1.265 19 C 0.101 3.899 20 C -0.120 4.120 21 C -0.063 4.063 22 C -0.171 4.171 23 C 0.074 3.926 24 N -0.522 5.522 25 C 0.094 3.906 26 C -0.114 4.114 27 C 0.091 3.909 28 N -0.454 5.454 29 H 0.133 0.867 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.158 0.842 33 H 0.054 0.946 34 H 0.104 0.896 35 H -0.005 1.005 36 H 0.016 0.984 37 H 0.261 0.739 38 H 0.045 0.955 39 H 0.100 0.900 40 H 0.156 0.844 41 H 0.168 0.832 42 H 0.177 0.823 43 H 0.129 0.871 44 H 0.140 0.860 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.621 3.895 -5.646 15.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.262 6.262 3 C 0.375 3.625 4 O -0.407 6.407 5 C -0.078 4.078 6 C -0.105 4.105 7 C -0.041 4.041 8 C -0.031 4.031 9 N -0.255 5.255 10 C 0.076 3.924 11 C -0.583 4.583 12 H 0.082 0.918 13 C -0.173 4.173 14 N -0.559 5.559 15 Si 0.765 3.235 16 H -0.202 1.202 17 H -0.219 1.219 18 H -0.190 1.190 19 C -0.027 4.027 20 C -0.122 4.122 21 C -0.090 4.090 22 C -0.190 4.190 23 C -0.083 4.083 24 N -0.231 5.231 25 C -0.063 4.063 26 C -0.134 4.134 27 C -0.069 4.069 28 N -0.166 5.166 29 H 0.151 0.849 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.175 0.825 33 H 0.072 0.928 34 H 0.122 0.878 35 H 0.013 0.987 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.118 0.882 40 H 0.174 0.826 41 H 0.185 0.815 42 H 0.194 0.806 43 H 0.147 0.853 44 H 0.157 0.843 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -13.992 3.203 -4.754 15.120 hybrid contribution 1.856 0.380 -0.831 2.068 sum -12.136 3.583 -5.586 13.832 Atomic orbital electron populations 1.23676 0.74069 1.06026 1.02967 1.86671 1.25316 1.31177 1.82998 1.20820 0.87856 0.81832 0.72029 1.90805 1.66258 1.36623 1.47029 1.20061 0.90873 0.90664 1.06202 1.21976 0.94487 0.98041 0.95976 1.20295 0.92749 0.96400 0.94639 1.21004 0.98999 0.92310 0.90740 1.62489 1.47010 1.02076 1.13915 1.19416 0.88668 0.91514 0.92794 1.21804 0.97847 1.19900 1.18722 0.91805 1.25554 1.01465 0.95051 0.95269 1.70056 1.34028 1.23049 1.28739 0.85917 0.80711 0.77583 0.79324 1.20203 1.21883 1.18960 1.20907 1.00086 0.89350 0.92390 1.20839 0.94720 0.98846 0.97823 1.21770 0.96713 0.93901 0.96602 1.22458 1.00923 1.01264 0.94373 1.23244 0.88273 0.95608 1.01146 1.67626 1.28408 1.10938 1.16136 1.22601 0.99185 0.95253 0.89227 1.22666 1.02602 0.93256 0.94923 1.23113 0.88800 0.99094 0.95880 1.67585 1.08869 1.30328 1.09836 0.84888 0.91597 0.91206 0.82461 0.92796 0.87798 0.98734 0.96624 0.92980 0.93699 0.88178 0.82644 0.81475 0.80626 0.85307 0.84266 0.79841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.35 -9.39 10.38 -55.82 -0.58 -9.96 16 3 C 0.53 16.22 7.95 70.43 0.56 16.78 16 4 O -0.52 -16.61 16.11 20.06 0.32 -16.29 16 5 C 0.06 1.85 6.75 41.88 0.28 2.13 16 6 C -0.08 -2.57 9.34 22.62 0.21 -2.35 16 7 C -0.03 -1.04 4.90 -19.69 -0.10 -1.14 16 8 C 0.10 3.01 4.98 85.56 0.43 3.43 16 9 N -0.53 -19.26 4.65 -909.95 -4.23 -23.49 16 10 C 0.20 9.38 4.60 85.56 0.39 9.77 16 11 C -0.54 -26.02 7.33 25.60 0.19 -25.83 16 12 H 0.06 2.94 5.95 -2.91 -0.02 2.92 16 13 C 0.03 1.38 5.46 84.66 0.46 1.84 16 14 N -0.92 -51.00 13.29 21.45 0.28 -50.71 16 15 Si 0.94 40.61 29.54 68.60 2.03 42.63 16 16 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 17 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 18 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 19 C 0.10 3.25 4.97 85.56 0.42 3.67 16 20 C -0.12 -3.99 4.91 -19.77 -0.10 -4.09 16 21 C -0.06 -1.70 9.88 22.47 0.22 -1.48 16 22 C -0.17 -4.10 10.11 22.36 0.23 -3.87 16 23 C 0.07 2.11 11.18 84.69 0.95 3.05 16 24 N -0.52 -19.32 10.36 -195.84 -2.03 -21.35 16 25 C 0.09 3.63 9.72 84.67 0.82 4.45 16 26 C -0.11 -3.83 8.06 22.44 0.18 -3.65 16 27 C 0.09 2.82 11.18 84.82 0.95 3.77 16 28 N -0.45 -14.91 10.12 -184.95 -1.87 -16.78 16 29 H 0.13 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.16 4.32 7.64 -2.91 -0.02 4.30 16 33 H 0.05 1.81 6.59 -2.39 -0.02 1.79 16 34 H 0.10 2.53 7.82 -2.38 -0.02 2.51 16 35 H -0.01 -0.29 6.66 -2.38 -0.02 -0.31 16 36 H 0.02 0.80 5.94 -2.39 -0.01 0.78 16 37 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 38 H 0.04 1.62 6.02 -2.38 -0.01 1.61 16 39 H 0.10 2.51 7.79 -2.38 -0.02 2.49 16 40 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 41 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 42 H 0.18 3.71 8.06 -2.91 -0.02 3.69 16 43 H 0.13 5.60 8.06 -2.91 -0.02 5.58 16 44 H 0.14 5.14 8.01 -2.91 -0.02 5.12 16 45 H 0.18 4.70 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -65.76 383.08 2.24 -63.52 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 1.01 Total: 24.31 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 7.30 Total: 8.12 kcal Atomic # 7 Polarization: -104.49 SS G_CDS: -7.84 Total: -112.34 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.26 Total: -26.26 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.63 kcal Total: -65.76 2.24 -63.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232768033.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.731 kcal (2) G-P(sol) polarization free energy of solvation -65.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds