Wall clock time and date at job start Sat Apr 11 2020 06:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35877 * 116.99788 * 2 1 4 4 C 1.39505 * 119.77704 * 0.02562 * 3 2 1 5 5 C 1.37902 * 120.62696 * 180.29760 * 4 3 2 6 6 C 1.39228 * 120.15921 * 359.44890 * 5 4 3 7 7 C 1.47765 * 120.22487 * 180.25546 * 6 5 4 8 8 C 1.40106 * 120.87487 * 130.01096 * 7 6 5 9 9 N 1.32025 * 119.00153 * 179.73563 * 8 7 6 10 10 C 1.32604 * 120.90452 * 0.52872 * 9 8 7 11 11 N 1.38235 * 119.03579 * 179.72413 * 10 9 8 12 12 C 1.47002 * 111.00085 * 123.65594 * 11 10 9 13 13 C 1.53097 * 109.25875 * 177.60665 * 12 11 10 14 14 O 1.43024 * 109.25768 * 56.85002 * 13 12 11 15 15 C 1.43015 * 113.73583 * 301.33364 * 14 13 12 16 16 C 1.47016 * 110.99677 * 0.02562 * 11 10 9 17 17 N 1.32599 * 121.93400 * 359.74909 * 10 9 8 18 18 C 1.32032 * 120.90428 * 359.97159 * 17 10 9 19 19 C 1.41934 * 119.55158 * 0.54114 * 6 5 4 20 20 C 1.40857 * 120.30718 * 179.75607 * 19 6 5 21 21 H 1.08002 * 119.99841 * 332.99872 * 20 19 6 22 22 C 1.40014 * 119.99799 * 153.00336 * 20 19 6 23 23 N 1.30804 * 120.00240 * 344.35937 * 22 20 19 24 24 Si 1.86798 * 119.99431 * 164.36139 * 22 20 19 25 25 H 1.48506 * 109.47105 * 94.96627 * 24 22 20 26 26 H 1.48502 * 109.46980 * 214.95980 * 24 22 20 27 27 H 1.48498 * 109.47590 * 334.96072 * 24 22 20 28 28 C 1.37888 * 119.77305 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47044 * 299.99631 * 1 2 3 30 30 H 1.08992 * 109.47013 * 60.00162 * 1 2 3 31 31 H 1.09003 * 109.46490 * 179.97438 * 1 2 3 32 32 H 1.07994 * 119.68359 * 0.02562 * 4 3 2 33 33 H 1.07994 * 119.91546 * 179.69570 * 5 4 3 34 34 H 1.07998 * 120.49789 * 0.02562 * 8 7 6 35 35 H 1.08999 * 109.51183 * 297.54214 * 12 11 10 36 36 H 1.09001 * 109.51109 * 57.67491 * 12 11 10 37 37 H 1.08999 * 109.51084 * 296.91682 * 13 12 11 38 38 H 1.09001 * 109.54564 * 176.80350 * 13 12 11 39 39 H 1.08998 * 109.50352 * 298.73179 * 15 14 13 40 40 H 1.09003 * 109.54181 * 178.63072 * 15 14 13 41 41 H 1.08998 * 109.51051 * 302.32789 * 16 11 10 42 42 H 1.09000 * 109.50278 * 62.46121 * 16 11 10 43 43 H 1.08003 * 120.50372 * 179.97438 * 18 17 10 44 44 H 0.96995 * 120.00066 * 180.02562 * 23 22 20 45 45 H 1.07994 * 120.09260 * 359.95993 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2107 0.0000 4 6 1.2815 2.3777 0.0005 5 6 1.8892 3.6156 -0.0056 6 6 3.2780 3.7130 -0.0009 7 6 3.9307 5.0387 -0.0018 8 6 4.9386 5.3445 0.9221 9 7 5.5003 6.5387 0.8848 10 6 5.1154 7.4449 -0.0035 11 7 5.7260 8.6851 -0.0044 12 6 6.3043 8.9866 -1.3219 13 6 6.9161 10.3898 -1.2956 14 8 7.8878 10.4612 -0.2486 15 6 7.3586 10.1736 1.0485 16 6 6.7513 8.7683 1.0459 17 7 4.1616 7.1966 -0.8906 18 6 3.5539 6.0249 -0.9228 19 6 4.0628 2.5303 -0.0013 20 6 5.4690 2.6104 -0.0018 21 1 5.9607 3.4732 -0.4264 22 6 6.2295 1.5714 0.5482 23 7 5.6615 0.6854 1.3251 24 14 8.0553 1.4505 0.1726 25 1 8.8281 2.1134 1.2536 26 1 8.4496 0.0213 0.0873 27 1 8.3399 2.1205 -1.1218 28 6 3.4231 1.2775 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 0.2036 2.3110 0.0014 33 1 1.2863 4.5115 -0.0101 34 1 5.2545 4.6127 1.6508 35 1 7.0789 8.2562 -1.5553 36 1 5.5229 8.9445 -2.0807 37 1 6.1322 11.1254 -1.1154 38 1 7.3960 10.5963 -2.2522 39 1 6.5875 10.9029 1.2969 40 1 8.1581 10.2233 1.7877 41 1 6.2963 8.5667 2.0156 42 1 7.5330 8.0342 0.8502 43 1 2.7776 5.8298 -1.6478 44 1 6.1884 -0.0341 1.7064 45 1 4.0092 0.3704 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240482863.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:45 Heat of formation + Delta-G solvation = 3.776862 kcal Electronic energy + Delta-G solvation = -29220.982542 eV Core-core repulsion = 25204.233975 eV Total energy + Delta-G solvation = -4016.748567 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.82330 -39.27595 -38.76292 -36.75127 -35.55898 -33.80571 -33.24135 -31.54894 -31.24074 -29.93626 -28.66478 -27.29970 -25.92645 -25.37604 -24.73291 -23.24270 -22.73362 -21.20336 -20.66070 -20.00623 -17.95620 -17.77598 -17.02506 -16.29935 -16.08004 -15.63617 -15.41234 -15.20764 -15.14019 -14.99414 -14.92560 -14.79203 -14.45813 -13.77903 -13.50515 -13.32681 -12.93470 -12.85565 -12.53152 -12.36422 -11.94089 -11.88770 -11.59255 -11.51194 -11.46396 -11.32729 -11.21103 -10.86032 -10.80930 -10.51123 -10.31975 -10.26461 -9.99808 -9.88402 -9.76262 -9.41722 -9.33320 -8.70125 -8.02682 -7.68200 -7.08518 -6.78298 -4.62922 1.40568 1.71463 2.61134 2.80545 2.97703 3.01005 3.07558 3.34051 3.74933 3.77657 4.18462 4.29771 4.41839 4.55745 4.85737 4.87427 5.03130 5.09825 5.16955 5.25230 5.31892 5.36820 5.49383 5.53352 5.55916 5.63944 5.70575 5.78120 5.82527 5.87097 5.91792 5.96950 6.04460 6.21831 6.43254 6.61900 6.70705 6.77393 6.86312 6.98990 7.06468 7.18819 7.22139 7.48216 7.51712 7.70094 7.80675 7.84840 8.16089 8.54820 8.61782 8.65273 8.70341 9.93837 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012402 B = 0.003341 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.142786 B = 8379.395262 C =10141.662460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.328 6.328 3 C 0.137 3.863 4 C -0.313 4.313 5 C -0.036 4.036 6 C -0.204 4.204 7 C -0.092 4.092 8 C 0.181 3.819 9 N -0.549 5.549 10 C 0.447 3.553 11 N -0.460 5.460 12 C 0.030 3.970 13 C 0.065 3.935 14 O -0.387 6.387 15 C 0.062 3.938 16 C 0.035 3.965 17 N -0.529 5.529 18 C 0.144 3.856 19 C 0.160 3.840 20 C -0.449 4.449 21 H 0.081 0.919 22 C 0.079 3.921 23 N -0.774 5.774 24 Si 0.904 3.096 25 H -0.267 1.267 26 H -0.272 1.272 27 H -0.260 1.260 28 C -0.190 4.190 29 H 0.046 0.954 30 H 0.045 0.955 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.174 0.826 35 H 0.049 0.951 36 H 0.102 0.898 37 H 0.062 0.938 38 H 0.102 0.898 39 H 0.059 0.941 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.060 0.940 43 H 0.162 0.838 44 H 0.286 0.714 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.496 9.230 -1.672 9.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.243 6.243 3 C 0.093 3.907 4 C -0.333 4.333 5 C -0.055 4.055 6 C -0.207 4.207 7 C -0.097 4.097 8 C 0.014 3.986 9 N -0.268 5.268 10 C 0.092 3.908 11 N -0.181 5.181 12 C -0.098 4.098 13 C -0.012 4.012 14 O -0.305 6.305 15 C -0.015 4.015 16 C -0.093 4.093 17 N -0.246 5.246 18 C -0.023 4.023 19 C 0.156 3.844 20 C -0.478 4.478 21 H 0.099 0.901 22 C -0.142 4.142 23 N -0.397 5.397 24 Si 0.728 3.272 25 H -0.192 1.192 26 H -0.197 1.197 27 H -0.184 1.184 28 C -0.210 4.210 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.191 0.809 35 H 0.068 0.932 36 H 0.120 0.880 37 H 0.080 0.920 38 H 0.120 0.880 39 H 0.077 0.923 40 H 0.120 0.880 41 H 0.115 0.885 42 H 0.079 0.921 43 H 0.179 0.821 44 H 0.097 0.903 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.045 10.199 -1.466 10.304 hybrid contribution 0.163 -1.592 -0.101 1.603 sum 0.118 8.607 -1.567 8.749 Atomic orbital electron populations 1.22782 0.80584 1.02026 1.00593 1.86017 1.19658 1.28975 1.89608 1.19022 0.92460 0.82581 0.96662 1.20379 0.97525 0.92381 1.22968 1.20325 0.93042 0.95431 0.96653 1.18197 0.91994 0.90020 1.20493 1.20374 0.97817 0.95727 0.95781 1.23438 0.89619 0.90680 0.94904 1.68203 1.29403 1.03015 1.26142 1.20692 0.91780 0.88515 0.89842 1.58676 1.29943 1.23134 1.06386 1.22842 0.99301 0.97767 0.89847 1.22704 0.91947 0.95044 0.91486 1.87979 1.35761 1.90804 1.15995 1.22781 0.98790 0.94763 0.85178 1.22656 0.93354 0.97436 0.95847 1.67726 1.09453 1.22581 1.24830 1.23225 0.96444 0.87058 0.95524 1.17182 0.92617 0.88862 0.85689 1.19491 0.90972 1.03902 1.33405 0.90127 1.25944 1.01433 0.94145 0.92674 1.69798 1.38705 1.11069 1.20121 0.86334 0.81735 0.78764 0.80372 1.19164 1.19686 1.18352 1.20519 0.89392 0.99059 1.12046 0.93557 0.93609 0.89808 0.88321 0.88756 0.80902 0.93245 0.87974 0.92001 0.88024 0.92286 0.87979 0.88492 0.92116 0.82060 0.90303 0.85439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 9.80 101.05 0.99 1.53 16 2 O -0.33 -6.79 10.48 -19.35 -0.20 -7.00 16 3 C 0.14 3.09 6.67 -39.24 -0.26 2.83 16 4 C -0.31 -6.44 9.02 -39.23 -0.35 -6.79 16 5 C -0.04 -0.73 9.52 -39.34 -0.37 -1.11 16 6 C -0.20 -4.46 5.57 -104.22 -0.58 -5.04 16 7 C -0.09 -1.85 4.92 -104.60 -0.51 -2.37 16 8 C 0.18 3.63 9.32 -16.77 -0.16 3.48 16 9 N -0.55 -10.57 8.65 -13.60 -0.12 -10.69 16 10 C 0.45 8.22 7.17 -322.78 -2.31 5.91 16 11 N -0.46 -7.17 4.78 -175.09 -0.84 -8.00 16 12 C 0.03 0.40 5.49 -3.72 -0.02 0.38 16 13 C 0.07 0.71 7.01 37.21 0.26 0.97 16 14 O -0.39 -4.81 10.83 -35.23 -0.38 -5.19 16 15 C 0.06 0.69 7.01 37.21 0.26 0.95 16 16 C 0.03 0.48 4.79 -3.71 -0.02 0.46 16 17 N -0.53 -9.79 9.70 -13.60 -0.13 -9.92 16 18 C 0.14 2.64 10.84 -16.77 -0.18 2.46 16 19 C 0.16 3.85 5.55 -106.57 -0.59 3.26 16 20 C -0.45 -10.75 7.17 -37.93 -0.27 -11.03 16 21 H 0.08 1.93 6.65 -52.49 -0.35 1.58 16 22 C 0.08 1.83 5.16 -17.32 -0.09 1.74 16 23 N -0.77 -18.51 10.99 55.55 0.61 -17.90 16 24 Si 0.90 17.77 29.59 -169.99 -5.03 12.74 16 25 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 26 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 27 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 28 C -0.19 -4.68 8.59 -38.79 -0.33 -5.02 16 29 H 0.05 0.66 7.64 -51.93 -0.40 0.26 16 30 H 0.05 0.64 7.65 -51.93 -0.40 0.24 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.10 1.78 6.25 -52.49 -0.33 1.45 16 33 H 0.09 1.69 8.05 -52.49 -0.42 1.27 16 34 H 0.17 3.56 7.39 -52.49 -0.39 3.17 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.10 1.37 7.66 -51.93 -0.40 0.97 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.10 1.35 7.83 -51.93 -0.41 0.94 16 42 H 0.06 0.92 8.00 -51.93 -0.42 0.50 16 43 H 0.16 2.60 8.06 -52.48 -0.42 2.17 16 44 H 0.29 6.25 8.30 -40.82 -0.34 5.91 16 45 H 0.13 3.32 6.26 -52.49 -0.33 2.99 16 LS Contribution 368.55 15.07 5.55 5.55 Total: -1.00 -27.55 368.55 -11.01 -38.56 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -5.92 Total: 9.24 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -4.55 Total: -7.40 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -0.48 Total: -46.52 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -0.58 Total: -12.18 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -27.55 -11.01 -38.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240482863.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.339 kcal (2) G-P(sol) polarization free energy of solvation -27.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds