Wall clock time and date at job start Sat Apr 11 2020 06:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35877 * 116.99788 * 2 1 4 4 C 1.39505 * 119.77704 * 0.02562 * 3 2 1 5 5 C 1.37902 * 120.62696 * 180.29760 * 4 3 2 6 6 C 1.39228 * 120.15921 * 359.44890 * 5 4 3 7 7 C 1.47765 * 120.22487 * 180.25546 * 6 5 4 8 8 C 1.40106 * 120.87487 * 130.01096 * 7 6 5 9 9 N 1.32025 * 119.00153 * 179.73563 * 8 7 6 10 10 C 1.32604 * 120.90452 * 0.52872 * 9 8 7 11 11 N 1.38235 * 119.03579 * 179.72413 * 10 9 8 12 12 C 1.47002 * 111.00085 * 123.65594 * 11 10 9 13 13 C 1.53097 * 109.25875 * 177.60665 * 12 11 10 14 14 O 1.43024 * 109.25768 * 56.85002 * 13 12 11 15 15 C 1.43015 * 113.73583 * 301.33364 * 14 13 12 16 16 C 1.47016 * 110.99677 * 0.02562 * 11 10 9 17 17 N 1.32599 * 121.93400 * 359.74909 * 10 9 8 18 18 C 1.32032 * 120.90428 * 359.97159 * 17 10 9 19 19 C 1.41934 * 119.55158 * 0.54114 * 6 5 4 20 20 C 1.40857 * 120.30718 * 179.75607 * 19 6 5 21 21 H 1.08002 * 119.99841 * 332.99872 * 20 19 6 22 22 C 1.40014 * 119.99799 * 153.00336 * 20 19 6 23 23 N 1.30804 * 120.00240 * 344.35937 * 22 20 19 24 24 Si 1.86798 * 119.99431 * 164.36139 * 22 20 19 25 25 H 1.48506 * 109.47105 * 94.96627 * 24 22 20 26 26 H 1.48502 * 109.46980 * 214.95980 * 24 22 20 27 27 H 1.48498 * 109.47590 * 334.96072 * 24 22 20 28 28 C 1.37888 * 119.77305 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47044 * 299.99631 * 1 2 3 30 30 H 1.08992 * 109.47013 * 60.00162 * 1 2 3 31 31 H 1.09003 * 109.46490 * 179.97438 * 1 2 3 32 32 H 1.07994 * 119.68359 * 0.02562 * 4 3 2 33 33 H 1.07994 * 119.91546 * 179.69570 * 5 4 3 34 34 H 1.07998 * 120.49789 * 0.02562 * 8 7 6 35 35 H 1.08999 * 109.51183 * 297.54214 * 12 11 10 36 36 H 1.09001 * 109.51109 * 57.67491 * 12 11 10 37 37 H 1.08999 * 109.51084 * 296.91682 * 13 12 11 38 38 H 1.09001 * 109.54564 * 176.80350 * 13 12 11 39 39 H 1.08998 * 109.50352 * 298.73179 * 15 14 13 40 40 H 1.09003 * 109.54181 * 178.63072 * 15 14 13 41 41 H 1.08998 * 109.51051 * 302.32789 * 16 11 10 42 42 H 1.09000 * 109.50278 * 62.46121 * 16 11 10 43 43 H 1.08003 * 120.50372 * 179.97438 * 18 17 10 44 44 H 0.96995 * 120.00066 * 180.02562 * 23 22 20 45 45 H 1.07994 * 120.09260 * 359.95993 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2107 0.0000 4 6 1.2815 2.3777 0.0005 5 6 1.8892 3.6156 -0.0056 6 6 3.2780 3.7130 -0.0009 7 6 3.9307 5.0387 -0.0018 8 6 4.9386 5.3445 0.9221 9 7 5.5003 6.5387 0.8848 10 6 5.1154 7.4449 -0.0035 11 7 5.7260 8.6851 -0.0044 12 6 6.3043 8.9866 -1.3219 13 6 6.9161 10.3898 -1.2956 14 8 7.8878 10.4612 -0.2486 15 6 7.3586 10.1736 1.0485 16 6 6.7513 8.7683 1.0459 17 7 4.1616 7.1966 -0.8906 18 6 3.5539 6.0249 -0.9228 19 6 4.0628 2.5303 -0.0013 20 6 5.4690 2.6104 -0.0018 21 1 5.9607 3.4732 -0.4264 22 6 6.2295 1.5714 0.5482 23 7 5.6615 0.6854 1.3251 24 14 8.0553 1.4505 0.1726 25 1 8.8281 2.1134 1.2536 26 1 8.4496 0.0213 0.0873 27 1 8.3399 2.1205 -1.1218 28 6 3.4231 1.2775 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 0.2036 2.3110 0.0014 33 1 1.2863 4.5115 -0.0101 34 1 5.2545 4.6127 1.6508 35 1 7.0789 8.2562 -1.5553 36 1 5.5229 8.9445 -2.0807 37 1 6.1322 11.1254 -1.1154 38 1 7.3960 10.5963 -2.2522 39 1 6.5875 10.9029 1.2969 40 1 8.1581 10.2233 1.7877 41 1 6.2963 8.5667 2.0156 42 1 7.5330 8.0342 0.8502 43 1 2.7776 5.8298 -1.6478 44 1 6.1884 -0.0341 1.7064 45 1 4.0092 0.3704 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240482863.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:45 Heat of formation + Delta-G solvation = -11.009089 kcal Electronic energy + Delta-G solvation = -29221.623709 eV Core-core repulsion = 25204.233975 eV Total energy + Delta-G solvation = -4017.389734 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.22077 -40.59798 -40.17087 -38.29814 -36.78662 -35.50745 -34.73366 -33.05287 -32.24117 -31.64603 -30.09412 -28.58430 -27.28117 -27.03316 -26.00479 -24.49296 -24.15543 -22.86106 -21.91878 -21.46869 -19.57823 -19.07382 -18.46464 -17.98190 -17.15208 -17.05772 -16.85243 -16.58549 -16.39117 -16.34815 -16.29204 -15.98045 -15.63815 -15.13677 -14.93801 -14.81253 -14.48559 -14.35494 -14.15036 -13.58216 -13.45571 -13.32210 -13.05826 -12.87063 -12.75108 -12.62974 -12.49445 -12.40149 -12.05935 -11.85466 -11.78234 -11.71138 -11.51640 -11.42277 -11.14173 -11.03999 -10.59324 -10.21110 -9.47297 -9.41014 -8.80293 -8.44544 -6.42395 -0.10355 0.19398 0.93574 1.11496 1.33779 1.43042 1.47221 2.07526 2.13285 2.65016 2.76980 2.82915 2.88075 3.18259 3.62221 3.66543 3.79798 3.82760 3.98571 4.06191 4.16467 4.17904 4.25949 4.29473 4.40657 4.48929 4.51793 4.54905 4.59561 4.69035 4.76322 4.76722 4.87140 4.92558 5.00473 5.01575 5.11035 5.24432 5.31398 5.48749 5.54713 5.73038 5.83898 5.86858 6.02305 6.09418 6.09836 6.24860 6.42349 6.83831 6.86700 7.00686 7.16519 8.23760 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012402 B = 0.003341 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.142786 B = 8379.395262 C =10141.662460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.351 6.351 3 C 0.133 3.867 4 C -0.308 4.308 5 C -0.036 4.036 6 C -0.206 4.206 7 C -0.110 4.110 8 C 0.175 3.825 9 N -0.558 5.558 10 C 0.446 3.554 11 N -0.461 5.461 12 C 0.030 3.970 13 C 0.070 3.930 14 O -0.399 6.399 15 C 0.068 3.932 16 C 0.035 3.965 17 N -0.532 5.532 18 C 0.157 3.843 19 C 0.137 3.863 20 C -0.471 4.471 21 H 0.071 0.929 22 C 0.046 3.954 23 N -0.806 5.806 24 Si 0.963 3.037 25 H -0.262 1.262 26 H -0.263 1.263 27 H -0.265 1.265 28 C -0.224 4.224 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.114 0.886 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.159 0.841 35 H 0.034 0.966 36 H 0.103 0.897 37 H 0.075 0.925 38 H 0.128 0.872 39 H 0.072 0.928 40 H 0.125 0.875 41 H 0.092 0.908 42 H 0.042 0.958 43 H 0.188 0.812 44 H 0.290 0.710 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.404 11.316 -2.337 11.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.266 6.266 3 C 0.088 3.912 4 C -0.328 4.328 5 C -0.054 4.054 6 C -0.208 4.208 7 C -0.115 4.115 8 C 0.009 3.991 9 N -0.277 5.277 10 C 0.090 3.910 11 N -0.182 5.182 12 C -0.097 4.097 13 C -0.007 4.007 14 O -0.318 6.318 15 C -0.009 4.009 16 C -0.092 4.092 17 N -0.249 5.249 18 C -0.009 4.009 19 C 0.135 3.865 20 C -0.499 4.499 21 H 0.089 0.911 22 C -0.172 4.172 23 N -0.431 5.431 24 Si 0.784 3.216 25 H -0.187 1.187 26 H -0.188 1.188 27 H -0.189 1.189 28 C -0.245 4.245 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.132 0.868 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.176 0.824 35 H 0.053 0.947 36 H 0.121 0.879 37 H 0.093 0.907 38 H 0.145 0.855 39 H 0.090 0.910 40 H 0.143 0.857 41 H 0.110 0.890 42 H 0.061 0.939 43 H 0.205 0.795 44 H 0.101 0.899 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.958 12.294 -2.124 12.513 hybrid contribution 0.286 -2.160 0.093 2.181 sum -0.673 10.133 -2.032 10.357 Atomic orbital electron populations 1.23163 0.77493 1.04565 1.01649 1.85984 1.22874 1.28354 1.89341 1.19143 0.92142 0.84026 0.95866 1.20717 0.99017 0.91602 1.21414 1.20677 0.92661 0.96652 0.95435 1.18381 0.92790 0.90023 1.19653 1.20308 0.98588 0.95648 0.96952 1.23261 0.89911 0.90915 0.95029 1.68230 1.29616 1.02934 1.26926 1.21186 0.91601 0.89146 0.89028 1.58811 1.30487 1.21053 1.07883 1.22952 0.98885 0.99227 0.88631 1.22837 0.92232 0.93228 0.92384 1.87975 1.36587 1.90596 1.16601 1.22866 0.99790 0.92850 0.85374 1.22730 0.92382 0.99069 0.95056 1.67854 1.09707 1.22508 1.24833 1.23579 0.96165 0.86298 0.94906 1.17445 0.93156 0.89672 0.86272 1.19504 0.91425 1.04288 1.34704 0.91079 1.26567 1.04798 0.93630 0.92163 1.69854 1.40118 1.11873 1.21235 0.85464 0.77414 0.78955 0.79724 1.18710 1.18756 1.18945 1.20443 0.90628 0.98447 1.14933 0.92641 0.92192 0.86770 0.85177 0.85618 0.82398 0.94729 0.87861 0.90724 0.85461 0.90987 0.85728 0.88982 0.93912 0.79472 0.89874 0.88035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 9.80 113.37 1.11 1.83 16 2 O -0.35 -14.42 10.48 -92.16 -0.97 -15.39 16 3 C 0.13 6.03 6.67 22.49 0.15 6.18 16 4 C -0.31 -12.17 9.02 22.50 0.20 -11.97 16 5 C -0.04 -1.41 9.52 22.43 0.21 -1.20 16 6 C -0.21 -9.04 5.57 -19.60 -0.11 -9.15 16 7 C -0.11 -4.43 4.92 -19.85 -0.10 -4.52 16 8 C 0.18 7.25 9.32 85.12 0.79 8.04 16 9 N -0.56 -21.74 8.65 -196.93 -1.70 -23.44 16 10 C 0.45 16.13 7.17 261.48 1.87 18.00 16 11 N -0.46 -13.82 4.78 -707.86 -3.39 -17.21 16 12 C 0.03 0.75 5.49 86.32 0.47 1.23 16 13 C 0.07 1.33 7.01 72.01 0.50 1.83 16 14 O -0.40 -8.90 10.83 -148.98 -1.61 -10.51 16 15 C 0.07 1.35 7.01 72.01 0.50 1.85 16 16 C 0.04 0.94 4.79 86.31 0.41 1.35 16 17 N -0.53 -18.99 9.70 -196.93 -1.91 -20.90 16 18 C 0.16 5.57 10.84 85.12 0.92 6.50 16 19 C 0.14 6.89 5.55 -21.13 -0.12 6.78 16 20 C -0.47 -23.66 7.17 23.34 0.17 -23.49 16 21 H 0.07 3.59 6.65 -2.91 -0.02 3.57 16 22 C 0.05 2.23 5.16 85.28 0.44 2.67 16 23 N -0.81 -40.61 10.99 21.84 0.24 -40.37 16 24 Si 0.96 37.79 29.59 68.60 2.03 39.82 16 25 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 26 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 27 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 28 C -0.22 -11.53 8.59 22.78 0.20 -11.33 16 29 H 0.05 1.44 7.64 -2.39 -0.02 1.42 16 30 H 0.06 1.49 7.65 -2.39 -0.02 1.48 16 31 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.13 4.25 6.25 -2.91 -0.02 4.23 16 33 H 0.13 4.09 8.05 -2.91 -0.02 4.07 16 34 H 0.16 6.92 7.39 -2.91 -0.02 6.89 16 35 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.10 2.59 7.66 -2.39 -0.02 2.57 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.12 1.90 8.14 -2.39 -0.02 1.89 16 41 H 0.09 2.52 7.83 -2.39 -0.02 2.50 16 42 H 0.04 1.29 8.00 -2.39 -0.02 1.27 16 43 H 0.19 5.54 8.06 -2.91 -0.02 5.52 16 44 H 0.29 13.33 8.30 -92.71 -0.77 12.56 16 45 H 0.10 5.64 6.26 -2.91 -0.02 5.62 16 Total: -1.00 -61.81 368.55 1.35 -60.46 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: 1.02 Total: 32.94 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 7.64 Total: -5.41 kcal Atomic # 7 Polarization: -95.16 SS G_CDS: -6.76 Total: -101.92 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -2.58 Total: -25.90 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.03 Total: 39.82 kcal Total: -61.81 1.35 -60.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240482863.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.452 kcal (2) G-P(sol) polarization free energy of solvation -61.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds