Wall clock time and date at job start Sat Apr 11 2020 06:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35535 * 116.99785 * 2 1 4 4 C 1.39142 * 120.47838 * 359.96854 * 3 2 1 5 5 C 1.38286 * 118.64969 * 179.76842 * 4 3 2 6 6 C 1.40175 * 119.56703 * 0.48577 * 5 4 3 7 7 C 1.48086 * 119.52812 * 179.78543 * 6 5 4 8 8 C 1.39636 * 120.58211 * 131.30581 * 7 6 5 9 9 C 1.38516 * 118.38666 * 179.73591 * 8 7 6 10 10 C 1.38247 * 119.46455 * 0.50926 * 9 8 7 11 11 N 1.31927 * 121.15550 * 359.47310 * 10 9 8 12 12 C 1.32344 * 121.75636 * 0.25710 * 11 10 9 13 13 N 1.38654 * 119.80039 * 179.97438 * 12 11 10 14 14 C 1.47013 * 111.00296 * 67.72274 * 13 12 11 15 15 C 1.53091 * 109.25936 * 177.60643 * 14 13 12 16 16 O 1.43012 * 109.26030 * 56.84619 * 15 14 13 17 17 C 1.43015 * 113.73927 * 301.33109 * 16 15 14 18 18 C 1.47010 * 111.00097 * 304.08125 * 13 12 11 19 19 N 1.32233 * 120.95029 * 359.50554 * 6 5 4 20 20 C 1.33606 * 121.44956 * 0.25589 * 19 6 5 21 21 C 1.40971 * 119.83537 * 179.97438 * 20 19 6 22 22 H 1.08000 * 120.00273 * 171.06648 * 21 20 19 23 23 C 1.40013 * 119.99655 * 351.06767 * 21 20 19 24 24 N 1.30788 * 119.99751 * 168.80865 * 23 21 20 25 25 Si 1.86798 * 120.00078 * 348.80402 * 23 21 20 26 26 H 1.48500 * 109.47278 * 84.64730 * 25 23 21 27 27 H 1.48507 * 109.47155 * 204.64350 * 25 23 21 28 28 H 1.48502 * 109.47391 * 324.64465 * 25 23 21 29 29 H 1.09001 * 109.47001 * 180.02562 * 1 2 3 30 30 H 1.08989 * 109.47492 * 300.00680 * 1 2 3 31 31 H 1.09003 * 109.46628 * 60.00959 * 1 2 3 32 32 H 1.07992 * 120.67551 * 0.02867 * 4 3 2 33 33 H 1.07997 * 120.22069 * 180.26522 * 5 4 3 34 34 H 1.08005 * 120.81084 * 359.95564 * 8 7 6 35 35 H 1.08004 * 120.26828 * 180.24345 * 9 8 7 36 36 H 1.08000 * 119.42113 * 179.75581 * 10 9 8 37 37 H 1.08999 * 109.50473 * 297.54183 * 14 13 12 38 38 H 1.08998 * 109.50171 * 57.66840 * 14 13 12 39 39 H 1.09004 * 109.50889 * 296.91088 * 15 14 13 40 40 H 1.09003 * 109.54356 * 176.80417 * 15 14 13 41 41 H 1.08997 * 109.50823 * 298.73178 * 17 16 15 42 42 H 1.09000 * 109.54507 * 178.62614 * 17 16 15 43 43 H 1.08999 * 109.50952 * 302.32951 * 18 13 12 44 44 H 1.09004 * 109.50369 * 62.46214 * 18 13 12 45 45 H 0.96997 * 119.99357 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.2962 2.3808 -0.0007 5 6 1.9629 3.5923 0.0043 6 6 3.3646 3.6105 -0.0006 7 6 4.0777 4.9083 -0.0001 8 6 5.1183 5.1468 0.8999 9 6 5.7577 6.3749 0.8568 10 6 5.3452 7.3246 -0.0591 11 7 4.3594 7.0784 -0.9006 12 6 3.7197 5.9198 -0.9043 13 7 2.6890 5.7046 -1.8063 14 6 3.1985 5.6442 -3.1840 15 6 2.0392 5.3465 -4.1386 16 8 1.0281 6.3452 -3.9786 17 6 0.5089 6.4310 -2.6487 18 6 1.6527 6.7396 -1.6790 19 7 4.0593 2.4853 0.0000 20 6 3.4557 1.2934 0.0001 21 6 4.2298 0.1153 0.0002 22 1 3.7541 -0.8434 0.1455 23 6 5.6153 0.1880 -0.1881 24 7 6.3606 -0.8648 0.0274 25 14 6.3991 1.7887 -0.7473 26 1 6.6497 2.6557 0.4320 27 1 7.6854 1.4980 -1.4302 28 1 5.4854 2.4851 -1.6884 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5137 -0.8901 32 1 0.2168 2.3460 -0.0007 33 1 1.4075 4.5185 0.0082 34 1 5.4199 4.3909 1.6099 35 1 6.5691 6.5902 1.5363 36 1 5.8416 8.2833 -0.0894 37 1 3.6503 6.6005 -3.4472 38 1 3.9457 4.8543 -3.2613 39 1 1.6217 4.3660 -3.9096 40 1 2.4015 5.3568 -5.1666 41 1 0.0470 5.4821 -2.3764 42 1 -0.2353 7.2257 -2.5984 43 1 1.2716 6.7494 -0.6579 44 1 2.0799 7.7136 -1.9182 45 1 7.3204 -0.8145 -0.1034 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243460430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:55 Heat of formation + Delta-G solvation = 0.169262 kcal Electronic energy + Delta-G solvation = -30713.756657 eV Core-core repulsion = 26696.851652 eV Total energy + Delta-G solvation = -4016.905005 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.67488 -39.19354 -38.80867 -36.98178 -35.59024 -33.86882 -32.48000 -31.25728 -31.12020 -30.79520 -29.14121 -26.95957 -26.62130 -25.71352 -24.01570 -23.40586 -22.60593 -21.54606 -20.63202 -20.32501 -17.76396 -17.57478 -17.04872 -16.38390 -16.28777 -16.13282 -15.41833 -15.23541 -15.11059 -14.99167 -14.91942 -14.65962 -14.12570 -13.77870 -13.53139 -13.22767 -13.09695 -12.90485 -12.68805 -12.51129 -12.37985 -12.31620 -11.80514 -11.48648 -11.39003 -11.33301 -10.93916 -10.79661 -10.69141 -10.57964 -10.48050 -9.95887 -9.87568 -9.55199 -9.44615 -9.30650 -8.77859 -8.57876 -8.39207 -7.83617 -7.28287 -6.92309 -4.56642 1.10993 1.41346 2.50916 2.54545 3.41363 3.47059 3.59386 3.61995 3.86580 3.90020 4.19040 4.39509 4.49018 4.56756 4.91259 4.99373 5.06581 5.13611 5.18182 5.23789 5.24129 5.33651 5.45448 5.49424 5.55317 5.58127 5.64105 5.66835 5.71268 5.75211 5.84524 5.91379 5.93165 6.00727 6.04927 6.23790 6.33946 6.53080 6.58212 6.67080 6.84267 6.99044 7.11923 7.18807 7.29713 7.42383 7.58912 8.02907 8.04861 8.22081 8.56591 8.67531 9.43271 10.00987 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009588 B = 0.005554 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2919.589572 B = 5040.196421 C = 6632.039574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.304 6.304 3 C -0.004 4.004 4 C -0.146 4.146 5 C -0.220 4.220 6 C 0.176 3.824 7 C -0.030 4.030 8 C -0.052 4.052 9 C -0.176 4.176 10 C 0.097 3.903 11 N -0.513 5.513 12 C 0.295 3.705 13 N -0.468 5.468 14 C 0.026 3.974 15 C 0.067 3.933 16 O -0.386 6.386 17 C 0.066 3.934 18 C 0.026 3.974 19 N -0.543 5.543 20 C 0.242 3.758 21 C -0.394 4.394 22 H 0.103 0.897 23 C 0.081 3.919 24 N -0.797 5.797 25 Si 0.997 3.003 26 H -0.276 1.276 27 H -0.334 1.334 28 H -0.264 1.264 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.141 0.859 35 H 0.135 0.865 36 H 0.151 0.849 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.098 0.902 41 H 0.062 0.938 42 H 0.097 0.903 43 H 0.082 0.918 44 H 0.056 0.944 45 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.376 12.508 -1.765 14.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.217 6.217 3 C -0.052 4.052 4 C -0.169 4.169 5 C -0.243 4.243 6 C 0.038 3.962 7 C -0.034 4.034 8 C -0.079 4.079 9 C -0.196 4.196 10 C -0.061 4.061 11 N -0.224 5.224 12 C 0.066 3.934 13 N -0.192 5.192 14 C -0.101 4.101 15 C -0.010 4.010 16 O -0.305 6.305 17 C -0.012 4.012 18 C -0.101 4.101 19 N -0.264 5.264 20 C 0.117 3.883 21 C -0.426 4.426 22 H 0.121 0.879 23 C -0.141 4.141 24 N -0.420 5.420 25 Si 0.833 3.167 26 H -0.203 1.203 27 H -0.267 1.267 28 H -0.190 1.190 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.159 0.841 35 H 0.153 0.847 36 H 0.169 0.831 37 H 0.071 0.929 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.116 0.884 41 H 0.080 0.920 42 H 0.115 0.885 43 H 0.101 0.899 44 H 0.075 0.925 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.809 12.409 -2.381 13.906 hybrid contribution 0.018 0.603 0.563 0.825 sum -5.790 13.011 -1.818 14.357 Atomic orbital electron populations 1.22807 0.81158 1.02281 1.00064 1.85984 1.18698 1.27401 1.89599 1.19969 0.92958 0.83549 1.08736 1.20945 0.98102 0.92363 1.05534 1.20694 0.92826 0.96290 1.14536 1.18749 0.90013 0.89281 0.98110 1.19385 0.95578 0.93588 0.94895 1.21826 0.92585 0.96415 0.97089 1.22062 1.01735 0.94601 1.01195 1.22427 0.93171 0.99064 0.91466 1.67628 1.08708 1.22223 1.23885 1.19630 0.92036 0.88515 0.93235 1.60170 1.09046 1.45884 1.04083 1.22772 0.98170 1.02071 0.87071 1.22654 0.87576 0.91919 0.98871 1.87944 1.55642 1.57996 1.28905 1.22654 0.94648 1.02090 0.81768 1.22745 0.92896 0.93649 1.00837 1.66813 1.36646 0.97176 1.25733 1.17953 0.86729 0.90830 0.92836 1.19394 0.91417 0.93528 1.38245 0.87943 1.26394 0.97422 0.99574 0.90736 1.69652 1.07684 1.31686 1.32971 0.84575 0.73206 0.79064 0.79902 1.20261 1.26731 1.19046 0.89574 0.93987 0.93931 0.87275 0.87646 0.84093 0.84745 0.83134 0.92857 0.89655 0.91793 0.88359 0.91983 0.88532 0.89947 0.92538 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.83 101.05 0.99 1.51 16 2 O -0.30 -6.61 9.63 -18.30 -0.18 -6.79 16 3 C 0.00 -0.08 6.74 -38.04 -0.26 -0.34 16 4 C -0.15 -2.94 9.11 -39.23 -0.36 -3.30 16 5 C -0.22 -4.43 8.74 -38.84 -0.34 -4.77 16 6 C 0.18 3.86 6.14 -82.93 -0.51 3.35 16 7 C -0.03 -0.59 5.62 -104.56 -0.59 -1.17 16 8 C -0.05 -0.92 9.84 -38.96 -0.38 -1.31 16 9 C -0.18 -2.47 10.09 -39.48 -0.40 -2.86 16 10 C 0.10 1.34 11.16 -17.51 -0.20 1.15 16 11 N -0.51 -8.29 9.59 -12.19 -0.12 -8.41 16 12 C 0.29 5.19 5.27 -154.96 -0.82 4.37 16 13 N -0.47 -7.62 2.80 -172.64 -0.48 -8.11 16 14 C 0.03 0.40 5.53 -3.72 -0.02 0.38 16 15 C 0.07 0.90 7.01 37.20 0.26 1.16 16 16 O -0.39 -5.33 10.83 -35.23 -0.38 -5.71 16 17 C 0.07 0.79 7.01 37.21 0.26 1.05 16 18 C 0.03 0.35 5.12 -3.71 -0.02 0.34 16 19 N -0.54 -13.41 4.65 -7.58 -0.04 -13.45 16 20 C 0.24 6.24 6.32 -84.86 -0.54 5.71 16 21 C -0.39 -10.80 9.47 -37.88 -0.36 -11.16 16 22 H 0.10 2.94 7.56 -52.49 -0.40 2.54 16 23 C 0.08 2.18 5.52 -17.33 -0.10 2.09 16 24 N -0.80 -21.36 13.93 55.55 0.77 -20.58 16 25 Si 1.00 24.38 25.44 -169.99 -4.32 20.06 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.33 -8.02 7.11 56.52 0.40 -7.62 16 28 H -0.26 -6.75 6.54 56.52 0.37 -6.39 16 29 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.04 0.59 7.69 -51.94 -0.40 0.20 16 31 H 0.04 0.61 7.69 -51.93 -0.40 0.21 16 32 H 0.11 1.87 6.43 -52.49 -0.34 1.53 16 33 H 0.11 1.92 7.00 -52.49 -0.37 1.55 16 34 H 0.14 2.54 8.06 -52.48 -0.42 2.12 16 35 H 0.13 1.44 8.06 -52.48 -0.42 1.01 16 36 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.05 0.82 8.05 -51.93 -0.42 0.40 16 38 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.08 1.08 7.92 -51.93 -0.41 0.66 16 44 H 0.06 0.80 7.84 -51.93 -0.41 0.39 16 45 H 0.29 7.05 8.29 -40.82 -0.34 6.71 16 LS Contribution 367.59 15.07 5.54 5.54 Total: -1.00 -30.66 367.59 -8.67 -39.33 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.11 Total: 1.95 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -3.36 Total: -3.82 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: 0.14 Total: -50.55 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -0.56 Total: -12.50 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -4.32 Total: 20.06 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.66 -8.67 -39.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243460430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.496 kcal (2) G-P(sol) polarization free energy of solvation -30.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds