Wall clock time and date at job start Sat Apr 11 2020 06:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35535 * 116.99785 * 2 1 4 4 C 1.39142 * 120.47838 * 359.96854 * 3 2 1 5 5 C 1.38286 * 118.64969 * 179.76842 * 4 3 2 6 6 C 1.40175 * 119.56703 * 0.48577 * 5 4 3 7 7 C 1.48086 * 119.52812 * 179.78543 * 6 5 4 8 8 C 1.39636 * 120.58211 * 131.30581 * 7 6 5 9 9 C 1.38516 * 118.38666 * 179.73591 * 8 7 6 10 10 C 1.38247 * 119.46455 * 0.50926 * 9 8 7 11 11 N 1.31927 * 121.15550 * 359.47310 * 10 9 8 12 12 C 1.32344 * 121.75636 * 0.25710 * 11 10 9 13 13 N 1.38654 * 119.80039 * 179.97438 * 12 11 10 14 14 C 1.47013 * 111.00296 * 67.72274 * 13 12 11 15 15 C 1.53091 * 109.25936 * 177.60643 * 14 13 12 16 16 O 1.43012 * 109.26030 * 56.84619 * 15 14 13 17 17 C 1.43015 * 113.73927 * 301.33109 * 16 15 14 18 18 C 1.47010 * 111.00097 * 304.08125 * 13 12 11 19 19 N 1.32233 * 120.95029 * 359.50554 * 6 5 4 20 20 C 1.33606 * 121.44956 * 0.25589 * 19 6 5 21 21 C 1.40971 * 119.83537 * 179.97438 * 20 19 6 22 22 H 1.08000 * 120.00273 * 171.06648 * 21 20 19 23 23 C 1.40013 * 119.99655 * 351.06767 * 21 20 19 24 24 N 1.30788 * 119.99751 * 168.80865 * 23 21 20 25 25 Si 1.86798 * 120.00078 * 348.80402 * 23 21 20 26 26 H 1.48500 * 109.47278 * 84.64730 * 25 23 21 27 27 H 1.48507 * 109.47155 * 204.64350 * 25 23 21 28 28 H 1.48502 * 109.47391 * 324.64465 * 25 23 21 29 29 H 1.09001 * 109.47001 * 180.02562 * 1 2 3 30 30 H 1.08989 * 109.47492 * 300.00680 * 1 2 3 31 31 H 1.09003 * 109.46628 * 60.00959 * 1 2 3 32 32 H 1.07992 * 120.67551 * 0.02867 * 4 3 2 33 33 H 1.07997 * 120.22069 * 180.26522 * 5 4 3 34 34 H 1.08005 * 120.81084 * 359.95564 * 8 7 6 35 35 H 1.08004 * 120.26828 * 180.24345 * 9 8 7 36 36 H 1.08000 * 119.42113 * 179.75581 * 10 9 8 37 37 H 1.08999 * 109.50473 * 297.54183 * 14 13 12 38 38 H 1.08998 * 109.50171 * 57.66840 * 14 13 12 39 39 H 1.09004 * 109.50889 * 296.91088 * 15 14 13 40 40 H 1.09003 * 109.54356 * 176.80417 * 15 14 13 41 41 H 1.08997 * 109.50823 * 298.73178 * 17 16 15 42 42 H 1.09000 * 109.54507 * 178.62614 * 17 16 15 43 43 H 1.08999 * 109.50952 * 302.32951 * 18 13 12 44 44 H 1.09004 * 109.50369 * 62.46214 * 18 13 12 45 45 H 0.96997 * 119.99357 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.2962 2.3808 -0.0007 5 6 1.9629 3.5923 0.0043 6 6 3.3646 3.6105 -0.0006 7 6 4.0777 4.9083 -0.0001 8 6 5.1183 5.1468 0.8999 9 6 5.7577 6.3749 0.8568 10 6 5.3452 7.3246 -0.0591 11 7 4.3594 7.0784 -0.9006 12 6 3.7197 5.9198 -0.9043 13 7 2.6890 5.7046 -1.8063 14 6 3.1985 5.6442 -3.1840 15 6 2.0392 5.3465 -4.1386 16 8 1.0281 6.3452 -3.9786 17 6 0.5089 6.4310 -2.6487 18 6 1.6527 6.7396 -1.6790 19 7 4.0593 2.4853 0.0000 20 6 3.4557 1.2934 0.0001 21 6 4.2298 0.1153 0.0002 22 1 3.7541 -0.8434 0.1455 23 6 5.6153 0.1880 -0.1881 24 7 6.3606 -0.8648 0.0274 25 14 6.3991 1.7887 -0.7473 26 1 6.6497 2.6557 0.4320 27 1 7.6854 1.4980 -1.4302 28 1 5.4854 2.4851 -1.6884 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5137 -0.8901 32 1 0.2168 2.3460 -0.0007 33 1 1.4075 4.5185 0.0082 34 1 5.4199 4.3909 1.6099 35 1 6.5691 6.5902 1.5363 36 1 5.8416 8.2833 -0.0894 37 1 3.6503 6.6005 -3.4472 38 1 3.9457 4.8543 -3.2613 39 1 1.6217 4.3660 -3.9096 40 1 2.4015 5.3568 -5.1666 41 1 0.0470 5.4821 -2.3764 42 1 -0.2353 7.2257 -2.5984 43 1 1.2716 6.7494 -0.6579 44 1 2.0799 7.7136 -1.9182 45 1 7.3204 -0.8145 -0.1034 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243460430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:55 Heat of formation + Delta-G solvation = -19.211809 kcal Electronic energy + Delta-G solvation = -30714.597084 eV Core-core repulsion = 26696.851652 eV Total energy + Delta-G solvation = -4017.745431 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.93579 -40.82208 -39.96637 -38.62489 -36.72591 -35.73668 -33.93830 -32.93291 -32.23042 -32.13924 -30.68965 -28.28124 -27.95186 -27.35354 -25.10343 -24.80594 -23.89378 -23.25923 -22.18588 -21.45346 -19.64104 -18.81664 -18.63558 -17.90010 -17.62515 -17.22365 -16.92261 -16.64770 -16.40412 -16.30843 -16.21283 -16.00942 -15.35477 -15.10506 -14.90854 -14.67779 -14.61403 -14.49864 -14.31826 -14.11352 -13.72001 -13.52002 -13.39799 -12.96630 -12.72798 -12.58191 -12.53624 -12.38815 -12.35013 -12.05924 -11.72647 -11.64964 -11.28834 -11.03286 -10.88069 -10.61406 -10.31490 -10.07019 -9.66221 -9.62807 -9.00417 -8.89261 -6.52808 -0.18194 0.13365 0.69003 0.87560 1.41085 1.52902 1.63348 2.36963 2.43177 2.54229 2.71583 2.77254 2.87679 3.36066 3.55475 3.66009 3.84765 3.95208 3.97510 4.04568 4.11542 4.16897 4.18516 4.22720 4.26678 4.35417 4.41133 4.48055 4.49625 4.52752 4.63682 4.72534 4.74474 4.76860 4.85077 4.90107 4.94879 5.08895 5.15272 5.19469 5.41882 5.46401 5.58548 5.71236 5.89132 6.10060 6.13412 6.19199 6.24984 6.61007 6.83333 6.95696 7.59990 8.10395 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009588 B = 0.005554 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2919.589572 B = 5040.196421 C = 6632.039574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.335 6.335 3 C -0.016 4.016 4 C -0.135 4.135 5 C -0.194 4.194 6 C 0.159 3.841 7 C -0.068 4.068 8 C -0.069 4.069 9 C -0.163 4.163 10 C 0.108 3.892 11 N -0.521 5.521 12 C 0.293 3.707 13 N -0.484 5.484 14 C 0.031 3.969 15 C 0.073 3.927 16 O -0.393 6.393 17 C 0.066 3.934 18 C 0.030 3.970 19 N -0.554 5.554 20 C 0.222 3.778 21 C -0.436 4.436 22 H 0.071 0.929 23 C 0.054 3.946 24 N -0.836 5.836 25 Si 1.046 2.954 26 H -0.272 1.272 27 H -0.329 1.329 28 H -0.285 1.285 29 H 0.110 0.890 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.149 0.851 33 H 0.133 0.867 34 H 0.126 0.874 35 H 0.173 0.827 36 H 0.195 0.805 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.119 0.881 41 H 0.061 0.939 42 H 0.126 0.874 43 H 0.089 0.911 44 H 0.052 0.948 45 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.053 16.337 -1.886 18.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.248 6.248 3 C -0.065 4.065 4 C -0.159 4.159 5 C -0.217 4.217 6 C 0.023 3.977 7 C -0.072 4.072 8 C -0.096 4.096 9 C -0.183 4.183 10 C -0.050 4.050 11 N -0.233 5.233 12 C 0.065 3.935 13 N -0.208 5.208 14 C -0.096 4.096 15 C -0.004 4.004 16 O -0.312 6.312 17 C -0.011 4.011 18 C -0.097 4.097 19 N -0.275 5.275 20 C 0.095 3.905 21 C -0.469 4.469 22 H 0.089 0.911 23 C -0.164 4.164 24 N -0.462 5.462 25 Si 0.882 3.118 26 H -0.199 1.199 27 H -0.263 1.263 28 H -0.213 1.213 29 H 0.129 0.871 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.167 0.833 33 H 0.150 0.850 34 H 0.144 0.856 35 H 0.190 0.810 36 H 0.212 0.788 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.137 0.863 41 H 0.079 0.921 42 H 0.144 0.856 43 H 0.107 0.893 44 H 0.071 0.929 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.508 16.251 -2.494 18.075 hybrid contribution 0.292 -0.311 0.639 0.768 sum -7.216 15.940 -1.855 17.596 Atomic orbital electron populations 1.23182 0.77862 1.04596 1.01492 1.85950 1.22145 1.27093 1.89615 1.20026 0.92463 0.85131 1.08837 1.21360 1.00021 0.91092 1.03446 1.21123 0.92505 0.97387 1.10679 1.19280 0.91188 0.89579 0.97697 1.19411 0.97420 0.93053 0.97317 1.21900 0.92919 0.97842 0.96955 1.22430 1.01672 0.92818 1.01333 1.23201 0.91747 1.00393 0.89679 1.67754 1.09478 1.21422 1.24617 1.19642 0.92446 0.88436 0.92990 1.60158 1.09393 1.47167 1.04065 1.22711 0.98483 1.01089 0.87356 1.22639 0.86869 0.91383 0.99498 1.87945 1.55478 1.57880 1.29881 1.22823 0.94461 1.03180 0.80630 1.22799 0.92492 0.92708 1.01675 1.66672 1.37860 0.97717 1.25206 1.18083 0.88369 0.90761 0.93325 1.19223 0.92104 0.93174 1.42421 0.91058 1.26816 0.97536 1.01188 0.90811 1.69664 1.08162 1.32656 1.35736 0.83840 0.72228 0.76784 0.78989 1.19866 1.26269 1.21297 0.87146 0.92330 0.92347 0.83306 0.84956 0.85556 0.80959 0.78818 0.92906 0.92059 0.92770 0.86290 0.92059 0.85578 0.89272 0.92927 0.89517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 9.83 113.37 1.11 1.79 16 2 O -0.33 -14.68 9.63 -88.39 -0.85 -15.53 16 3 C -0.02 -0.76 6.74 23.27 0.16 -0.61 16 4 C -0.14 -5.17 9.11 22.50 0.21 -4.97 16 5 C -0.19 -7.45 8.74 22.75 0.20 -7.25 16 6 C 0.16 6.93 6.14 42.17 0.26 7.19 16 7 C -0.07 -2.56 5.62 -19.82 -0.11 -2.67 16 8 C -0.07 -2.35 9.84 22.67 0.22 -2.13 16 9 C -0.16 -4.03 10.09 22.34 0.23 -3.80 16 10 C 0.11 2.55 11.16 84.68 0.95 3.49 16 11 N -0.52 -15.33 9.59 -192.49 -1.85 -17.18 16 12 C 0.29 9.79 5.27 133.49 0.70 10.49 16 13 N -0.48 -14.84 2.80 -700.12 -1.96 -16.80 16 14 C 0.03 0.91 5.53 86.31 0.48 1.39 16 15 C 0.07 1.84 7.01 72.01 0.50 2.34 16 16 O -0.39 -9.77 10.83 -148.98 -1.61 -11.39 16 17 C 0.07 1.37 7.01 72.01 0.50 1.88 16 18 C 0.03 0.73 5.12 86.31 0.44 1.17 16 19 N -0.55 -28.02 4.65 -177.90 -0.83 -28.84 16 20 C 0.22 11.88 6.32 40.32 0.25 12.14 16 21 C -0.44 -25.56 9.47 23.37 0.22 -25.34 16 22 H 0.07 4.46 7.56 -2.91 -0.02 4.44 16 23 C 0.05 3.09 5.52 85.28 0.47 3.56 16 24 N -0.84 -47.53 13.93 21.84 0.30 -47.23 16 25 Si 1.05 52.57 25.44 68.60 1.75 54.31 16 26 H -0.27 -13.20 7.11 99.48 0.71 -12.50 16 27 H -0.33 -15.91 7.11 99.48 0.71 -15.21 16 28 H -0.29 -15.09 6.54 99.48 0.65 -14.44 16 29 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.06 1.49 7.69 -2.39 -0.02 1.47 16 31 H 0.06 1.50 7.69 -2.39 -0.02 1.48 16 32 H 0.15 4.47 6.43 -2.91 -0.02 4.45 16 33 H 0.13 4.36 7.00 -2.91 -0.02 4.34 16 34 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 35 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 36 H 0.20 2.85 8.06 -2.91 -0.02 2.83 16 37 H 0.05 1.55 8.05 -2.39 -0.02 1.53 16 38 H 0.06 2.08 8.14 -2.39 -0.02 2.07 16 39 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 40 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.09 2.03 7.92 -2.39 -0.02 2.01 16 44 H 0.05 1.33 7.84 -2.38 -0.02 1.31 16 45 H 0.29 15.20 8.29 -92.71 -0.77 14.43 16 Total: -1.00 -71.44 367.59 2.70 -68.73 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.95 Total: 15.23 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 6.79 Total: -1.32 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -4.33 Total: -110.05 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -2.46 Total: -26.92 kcal Atomic # 14 Polarization: 52.57 SS G_CDS: 1.75 Total: 54.31 kcal Total: -71.44 2.70 -68.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243460430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.523 kcal (2) G-P(sol) polarization free energy of solvation -71.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds