Wall clock time and date at job start Sat Apr 11 2020 06:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35750 * 116.99512 * 2 1 4 4 C 1.39216 * 120.81827 * 0.24320 * 3 2 1 5 5 C 1.38302 * 119.28746 * 180.30149 * 4 3 2 6 6 N 1.31610 * 120.97436 * 359.72361 * 5 4 3 7 7 C 1.32801 * 121.77975 * 359.97438 * 6 5 4 8 8 C 1.48185 * 119.69763 * 180.02562 * 7 6 5 9 9 O 1.21510 * 120.00136 * 179.97438 * 8 7 6 10 10 N 1.34778 * 119.99922 * 359.97438 * 8 7 6 11 11 C 1.46502 * 120.00082 * 179.97438 * 10 8 7 12 12 C 1.50696 * 109.47471 * 180.02562 * 11 10 8 13 13 C 1.38239 * 119.99828 * 269.72734 * 12 11 10 14 14 C 1.38234 * 119.99727 * 179.76328 * 13 12 11 15 15 C 1.38241 * 120.00073 * 0.48808 * 14 13 12 16 16 C 1.50702 * 120.00103 * 179.76656 * 15 14 13 17 17 N 1.46493 * 109.46996 * 270.01968 * 16 15 14 18 18 C 1.36935 * 119.99934 * 179.97438 * 17 16 15 19 19 H 1.08007 * 120.00312 * 0.02562 * 18 17 16 20 20 C 1.38815 * 120.00234 * 180.02562 * 18 17 16 21 21 N 1.31621 * 119.99693 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00074 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46871 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47018 * 120.00292 * 22 20 18 25 25 H 1.48502 * 109.46798 * 240.00173 * 22 20 18 26 26 C 1.38234 * 119.99935 * 359.78658 * 15 14 13 27 27 C 1.38230 * 119.99757 * 359.95906 * 26 15 14 28 28 C 1.39102 * 120.60332 * 0.02562 * 7 6 5 29 29 H 1.09004 * 109.46634 * 180.02562 * 1 2 3 30 30 H 1.08989 * 109.47601 * 300.00267 * 1 2 3 31 31 H 1.09002 * 109.46840 * 60.01040 * 1 2 3 32 32 H 1.08001 * 120.35439 * 0.02562 * 4 3 2 33 33 H 1.08003 * 119.51389 * 179.74325 * 5 4 3 34 34 H 0.96996 * 120.00436 * 0.02562 * 10 8 7 35 35 H 1.09000 * 109.46981 * 300.00263 * 11 10 8 36 36 H 1.09007 * 109.46761 * 59.99746 * 11 10 8 37 37 H 1.07996 * 120.00310 * 359.97438 * 13 12 11 38 38 H 1.07997 * 120.00016 * 180.25261 * 14 13 12 39 39 H 1.09001 * 109.46944 * 30.02303 * 16 15 14 40 40 H 1.08994 * 109.46942 * 150.01915 * 16 15 14 41 41 H 0.96996 * 120.00262 * 0.02562 * 17 16 15 42 42 H 0.97005 * 119.99450 * 179.97438 * 21 20 18 43 43 H 1.08002 * 119.99997 * 179.97438 * 26 15 14 44 44 H 1.08008 * 119.99777 * 180.02562 * 27 26 15 45 45 H 1.08002 * 120.50511 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2096 0.0000 4 6 1.3037 2.3878 0.0051 5 6 1.9641 3.6029 -0.0014 6 7 3.2790 3.6592 -0.0069 7 6 4.0260 2.5612 -0.0059 8 6 5.5032 2.6783 -0.0116 9 8 6.1920 1.6773 -0.0102 10 7 6.0828 3.8951 -0.0183 11 6 7.5432 4.0108 -0.0234 12 6 7.9317 5.4668 -0.0298 13 6 8.1116 6.1289 -1.2300 14 6 8.4632 7.4657 -1.2359 15 6 8.6448 8.1380 -0.0417 16 6 9.0333 9.5941 -0.0481 17 7 10.4936 9.7098 -0.0532 18 6 11.0824 10.9461 -0.0600 19 1 10.4702 11.8359 -0.0612 20 6 12.4662 11.0558 -0.0654 21 7 13.2123 9.9715 -0.0644 22 14 13.2694 12.7423 -0.0740 23 1 12.2182 13.7912 -0.0731 24 1 14.1187 12.8923 1.1350 25 1 14.1099 12.8841 -1.2901 26 6 8.4705 7.4744 1.1584 27 6 8.1137 6.1390 1.1643 28 6 3.4345 1.3022 0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8898 31 1 -0.3633 0.5137 -0.8901 32 1 0.2242 2.3533 0.0095 33 1 1.3924 4.5192 -0.0017 34 1 5.5330 4.6941 -0.0190 35 1 7.9488 3.5309 0.8672 36 1 7.9431 3.5237 -0.9128 37 1 7.9741 5.6026 -2.1629 38 1 8.5997 7.9840 -2.1734 39 1 8.6275 10.0744 -0.9385 40 1 8.6333 10.0807 0.8414 41 1 11.0435 8.9107 -0.0525 42 1 14.1793 10.0482 -0.0685 43 1 8.6128 7.9995 2.0914 44 1 7.9771 5.6207 2.1020 45 1 4.0435 0.4103 0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267937475.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:10 Heat of formation + Delta-G solvation = 2.461902 kcal Electronic energy + Delta-G solvation = -26989.695866 eV Core-core repulsion = 22972.890278 eV Total energy + Delta-G solvation = -4016.805588 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.31109 -39.93191 -39.13636 -38.39413 -35.57087 -34.34557 -32.38011 -32.12360 -31.70064 -30.68088 -30.09854 -28.28392 -27.16701 -24.96900 -23.89087 -23.78759 -22.45351 -22.33050 -21.02645 -20.44299 -19.19182 -17.83652 -17.28877 -17.00306 -16.51698 -16.31271 -15.98258 -15.77536 -15.52958 -15.04898 -15.01030 -14.80434 -14.53780 -14.34018 -14.00444 -13.90675 -13.36630 -13.17991 -13.14694 -13.00263 -12.79503 -12.31269 -12.21966 -12.02812 -11.95206 -11.81362 -11.07855 -10.86174 -10.71072 -10.65837 -10.54612 -10.06584 -10.02541 -9.80470 -9.77419 -9.47259 -9.24204 -8.90432 -8.64852 -8.41127 -6.93733 -5.76327 -3.06138 0.15840 0.76006 1.42209 1.68312 2.39018 2.41181 3.03302 3.43658 3.44260 3.48986 3.51551 3.74738 4.02210 4.07739 4.27161 4.46317 4.49719 4.57336 4.61980 4.66901 4.78554 4.83572 4.98742 5.08889 5.22862 5.24699 5.35781 5.40757 5.45901 5.57472 5.58994 5.77572 5.85946 5.88472 6.16633 6.17593 6.20261 6.23648 6.51324 6.55678 6.60205 6.66496 6.73221 7.12954 7.14347 7.25825 7.44030 7.69666 7.92886 8.41403 9.53089 10.09302 10.45061 11.46202 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.034646 B = 0.001560 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.985589 B =17939.665663 C =18432.541542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.163 3.837 4 C -0.244 4.244 5 C 0.138 3.862 6 N -0.481 5.481 7 C 0.117 3.883 8 C 0.569 3.431 9 O -0.531 6.531 10 N -0.700 5.700 11 C 0.164 3.836 12 C -0.125 4.125 13 C -0.102 4.102 14 C -0.107 4.107 15 C -0.063 4.063 16 C 0.184 3.816 17 N -0.727 5.727 18 C -0.242 4.242 19 H 0.072 0.928 20 C -0.013 4.013 21 N -0.931 5.931 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.106 4.106 27 C -0.102 4.102 28 C -0.144 4.144 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.145 0.855 33 H 0.167 0.833 34 H 0.414 0.586 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.028 0.972 40 H 0.028 0.972 41 H 0.386 0.614 42 H 0.255 0.745 43 H 0.124 0.876 44 H 0.119 0.881 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.128 -19.218 0.152 34.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.218 6.218 3 C 0.109 3.891 4 C -0.265 4.265 5 C -0.021 4.021 6 N -0.196 5.196 7 C -0.020 4.020 8 C 0.354 3.646 9 O -0.408 6.408 10 N -0.351 5.351 11 C 0.041 3.959 12 C -0.126 4.126 13 C -0.120 4.120 14 C -0.125 4.125 15 C -0.064 4.064 16 C 0.057 3.943 17 N -0.371 5.371 18 C -0.373 4.373 19 H 0.090 0.910 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.125 4.125 27 C -0.120 4.120 28 C -0.166 4.166 29 H 0.124 0.876 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.162 0.838 33 H 0.185 0.815 34 H 0.251 0.749 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.137 0.863 38 H 0.142 0.858 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.220 0.780 42 H 0.065 0.935 43 H 0.142 0.858 44 H 0.137 0.863 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -28.065 -19.175 0.148 33.991 hybrid contribution -0.300 0.361 -0.001 0.469 sum -28.365 -18.814 0.147 34.038 Atomic orbital electron populations 1.23199 0.77364 1.04739 1.01809 1.86110 1.22174 1.25890 1.87665 1.19213 0.92122 0.84918 0.92829 1.22440 1.01938 0.93187 1.08955 1.22610 0.89581 0.97313 0.92574 1.67628 1.07442 1.31135 1.13399 1.20958 0.94316 0.88694 0.98047 1.17778 0.85722 0.83880 0.77267 1.90810 1.63334 1.36570 1.50051 1.45975 1.07900 1.08352 1.72920 1.20255 0.79203 0.93179 1.03229 1.19637 1.04411 0.94600 0.93903 1.20989 0.99412 0.94597 0.97037 1.21116 0.99017 0.94130 0.98244 1.20389 0.95775 0.97437 0.92811 1.19707 0.87286 0.88545 0.98745 1.42344 0.98898 1.06366 1.89507 1.19293 0.89832 0.85230 1.42954 0.91005 1.24763 0.96143 0.97088 1.02877 1.69690 1.04275 1.26438 1.57519 0.86105 0.79307 0.83492 0.77200 1.20505 1.21839 1.21835 1.21113 0.99003 0.94200 0.98187 1.20987 0.99397 0.94560 0.97098 1.21401 0.92030 0.99783 1.03358 0.87572 0.92117 0.92112 0.83777 0.81545 0.74938 0.90372 0.90361 0.86293 0.85808 0.95381 0.95377 0.78044 0.93515 0.85806 0.86296 0.82607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.07 9.84 101.05 0.99 1.06 16 2 O -0.31 -2.19 10.51 -18.96 -0.20 -2.39 16 3 C 0.16 1.29 6.73 -38.85 -0.26 1.03 16 4 C -0.24 -1.43 9.12 -39.19 -0.36 -1.78 16 5 C 0.14 0.92 11.17 -17.62 -0.20 0.72 16 6 N -0.48 -4.54 9.54 -9.87 -0.09 -4.63 16 7 C 0.12 1.24 6.75 -83.04 -0.56 0.68 16 8 C 0.57 6.98 7.81 -12.17 -0.10 6.88 16 9 O -0.53 -7.91 16.32 5.36 0.09 -7.82 16 10 N -0.70 -7.75 5.54 -62.32 -0.35 -8.10 16 11 C 0.16 1.89 5.80 -5.19 -0.03 1.86 16 12 C -0.12 -1.60 5.25 -104.63 -0.55 -2.14 16 13 C -0.10 -1.37 9.70 -39.58 -0.38 -1.75 16 14 C -0.11 -1.67 9.70 -39.58 -0.38 -2.05 16 15 C -0.06 -1.10 5.25 -104.62 -0.55 -1.65 16 16 C 0.18 3.76 6.38 -5.20 -0.03 3.73 16 17 N -0.73 -18.68 5.59 -61.09 -0.34 -19.02 16 18 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 19 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 22 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 C -0.11 -1.67 9.70 -39.59 -0.38 -2.05 16 27 C -0.10 -1.37 9.70 -39.59 -0.38 -1.76 16 28 C -0.14 -1.41 9.60 -38.89 -0.37 -1.78 16 29 H 0.11 0.13 8.14 -51.93 -0.42 -0.30 16 30 H 0.06 0.10 7.70 -51.93 -0.40 -0.30 16 31 H 0.06 0.10 7.72 -51.93 -0.40 -0.30 16 32 H 0.14 0.40 6.45 -52.49 -0.34 0.06 16 33 H 0.17 0.60 8.06 -52.48 -0.42 0.17 16 34 H 0.41 4.27 7.79 -40.82 -0.32 3.95 16 35 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 36 H 0.08 0.90 8.08 -51.92 -0.42 0.48 16 37 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.12 1.89 8.06 -52.49 -0.42 1.46 16 39 H 0.03 0.57 8.09 -51.93 -0.42 0.15 16 40 H 0.03 0.57 8.08 -51.93 -0.42 0.15 16 41 H 0.39 10.59 7.66 -40.82 -0.31 10.28 16 42 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.12 1.89 8.06 -52.49 -0.42 1.46 16 44 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 45 H 0.16 1.55 7.64 -52.49 -0.40 1.15 16 LS Contribution 391.29 15.07 5.90 5.90 Total: -1.00 -34.21 391.29 -9.02 -43.23 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -5.93 Total: 9.58 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -3.79 Total: -6.44 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -0.06 Total: -59.49 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: -0.11 Total: -10.21 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.21 -9.02 -43.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267937475.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.691 kcal (2) G-P(sol) polarization free energy of solvation -34.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds