Wall clock time and date at job start Sat Apr 11 2020 06:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35750 * 116.99512 * 2 1 4 4 C 1.39216 * 120.81827 * 0.24320 * 3 2 1 5 5 C 1.38302 * 119.28746 * 180.30149 * 4 3 2 6 6 N 1.31610 * 120.97436 * 359.72361 * 5 4 3 7 7 C 1.32801 * 121.77975 * 359.97438 * 6 5 4 8 8 C 1.48185 * 119.69763 * 180.02562 * 7 6 5 9 9 O 1.21510 * 120.00136 * 179.97438 * 8 7 6 10 10 N 1.34778 * 119.99922 * 359.97438 * 8 7 6 11 11 C 1.46502 * 120.00082 * 179.97438 * 10 8 7 12 12 C 1.50696 * 109.47471 * 180.02562 * 11 10 8 13 13 C 1.38239 * 119.99828 * 269.72734 * 12 11 10 14 14 C 1.38234 * 119.99727 * 179.76328 * 13 12 11 15 15 C 1.38241 * 120.00073 * 0.48808 * 14 13 12 16 16 C 1.50702 * 120.00103 * 179.76656 * 15 14 13 17 17 N 1.46493 * 109.46996 * 270.01968 * 16 15 14 18 18 C 1.36935 * 119.99934 * 179.97438 * 17 16 15 19 19 H 1.08007 * 120.00312 * 0.02562 * 18 17 16 20 20 C 1.38815 * 120.00234 * 180.02562 * 18 17 16 21 21 N 1.31621 * 119.99693 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00074 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46871 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47018 * 120.00292 * 22 20 18 25 25 H 1.48502 * 109.46798 * 240.00173 * 22 20 18 26 26 C 1.38234 * 119.99935 * 359.78658 * 15 14 13 27 27 C 1.38230 * 119.99757 * 359.95906 * 26 15 14 28 28 C 1.39102 * 120.60332 * 0.02562 * 7 6 5 29 29 H 1.09004 * 109.46634 * 180.02562 * 1 2 3 30 30 H 1.08989 * 109.47601 * 300.00267 * 1 2 3 31 31 H 1.09002 * 109.46840 * 60.01040 * 1 2 3 32 32 H 1.08001 * 120.35439 * 0.02562 * 4 3 2 33 33 H 1.08003 * 119.51389 * 179.74325 * 5 4 3 34 34 H 0.96996 * 120.00436 * 0.02562 * 10 8 7 35 35 H 1.09000 * 109.46981 * 300.00263 * 11 10 8 36 36 H 1.09007 * 109.46761 * 59.99746 * 11 10 8 37 37 H 1.07996 * 120.00310 * 359.97438 * 13 12 11 38 38 H 1.07997 * 120.00016 * 180.25261 * 14 13 12 39 39 H 1.09001 * 109.46944 * 30.02303 * 16 15 14 40 40 H 1.08994 * 109.46942 * 150.01915 * 16 15 14 41 41 H 0.96996 * 120.00262 * 0.02562 * 17 16 15 42 42 H 0.97005 * 119.99450 * 179.97438 * 21 20 18 43 43 H 1.08002 * 119.99997 * 179.97438 * 26 15 14 44 44 H 1.08008 * 119.99777 * 180.02562 * 27 26 15 45 45 H 1.08002 * 120.50511 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2096 0.0000 4 6 1.3037 2.3878 0.0051 5 6 1.9641 3.6029 -0.0014 6 7 3.2790 3.6592 -0.0069 7 6 4.0260 2.5612 -0.0059 8 6 5.5032 2.6783 -0.0116 9 8 6.1920 1.6773 -0.0102 10 7 6.0828 3.8951 -0.0183 11 6 7.5432 4.0108 -0.0234 12 6 7.9317 5.4668 -0.0298 13 6 8.1116 6.1289 -1.2300 14 6 8.4632 7.4657 -1.2359 15 6 8.6448 8.1380 -0.0417 16 6 9.0333 9.5941 -0.0481 17 7 10.4936 9.7098 -0.0532 18 6 11.0824 10.9461 -0.0600 19 1 10.4702 11.8359 -0.0612 20 6 12.4662 11.0558 -0.0654 21 7 13.2123 9.9715 -0.0644 22 14 13.2694 12.7423 -0.0740 23 1 12.2182 13.7912 -0.0731 24 1 14.1187 12.8923 1.1350 25 1 14.1099 12.8841 -1.2901 26 6 8.4705 7.4744 1.1584 27 6 8.1137 6.1390 1.1643 28 6 3.4345 1.3022 0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8898 31 1 -0.3633 0.5137 -0.8901 32 1 0.2242 2.3533 0.0095 33 1 1.3924 4.5192 -0.0017 34 1 5.5330 4.6941 -0.0190 35 1 7.9488 3.5309 0.8672 36 1 7.9431 3.5237 -0.9128 37 1 7.9741 5.6026 -2.1629 38 1 8.5997 7.9840 -2.1734 39 1 8.6275 10.0744 -0.9385 40 1 8.6333 10.0807 0.8414 41 1 11.0435 8.9107 -0.0525 42 1 14.1793 10.0482 -0.0685 43 1 8.6128 7.9995 2.0914 44 1 7.9771 5.6207 2.1020 45 1 4.0435 0.4103 0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267937475.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:09 Heat of formation + Delta-G solvation = -20.815995 kcal Electronic energy + Delta-G solvation = -26990.705271 eV Core-core repulsion = 22972.890278 eV Total energy + Delta-G solvation = -4017.814994 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.93731 -40.82328 -40.16879 -39.03789 -36.96827 -35.83323 -33.79984 -32.72511 -32.65365 -31.84144 -31.61060 -28.77289 -28.34032 -26.32321 -24.94902 -24.44702 -23.89963 -23.61655 -21.82369 -21.68885 -19.88552 -19.32249 -18.43974 -17.78289 -17.01723 -16.99065 -16.89418 -16.74173 -16.69118 -16.43000 -16.04719 -15.92990 -15.55879 -15.23880 -15.09693 -14.81675 -14.73719 -14.60792 -14.32861 -14.00353 -13.70236 -13.40516 -13.39596 -13.09482 -12.98485 -12.79540 -12.54762 -12.33730 -12.14075 -11.96204 -11.90301 -11.72736 -11.52151 -10.99283 -10.75648 -10.45965 -10.13970 -10.00542 -9.80590 -9.64354 -9.02789 -7.95437 -5.25737 -0.49353 0.18788 0.24448 0.52087 1.48110 1.49088 1.59449 1.61554 1.82947 2.28857 2.55810 2.77009 2.85873 3.13605 3.38049 3.57116 3.63846 3.79056 3.90255 3.95646 4.05004 4.12739 4.15558 4.25220 4.28997 4.32685 4.37913 4.48199 4.57172 4.64660 4.70023 4.70509 4.75753 4.90669 4.90723 4.92222 5.08120 5.21043 5.25134 5.34287 5.46508 5.48476 5.60542 5.82145 6.07145 6.12643 6.25387 6.32977 6.74836 7.04127 7.32085 8.05091 8.30276 9.28102 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.034646 B = 0.001560 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.985589 B =17939.665663 C =18432.541542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.327 6.327 3 C 0.158 3.842 4 C -0.226 4.226 5 C 0.135 3.865 6 N -0.496 5.496 7 C 0.099 3.901 8 C 0.569 3.431 9 O -0.566 6.566 10 N -0.692 5.692 11 C 0.168 3.832 12 C -0.111 4.111 13 C -0.097 4.097 14 C -0.115 4.115 15 C -0.086 4.086 16 C 0.186 3.814 17 N -0.739 5.739 18 C -0.248 4.248 19 H 0.079 0.921 20 C -0.075 4.075 21 N -0.970 5.970 22 Si 0.976 3.024 23 H -0.264 1.264 24 H -0.293 1.293 25 H -0.293 1.293 26 C -0.115 4.115 27 C -0.097 4.097 28 C -0.161 4.161 29 H 0.120 0.880 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.181 0.819 33 H 0.202 0.798 34 H 0.419 0.581 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.142 0.858 38 H 0.123 0.877 39 H 0.031 0.969 40 H 0.031 0.969 41 H 0.373 0.627 42 H 0.251 0.749 43 H 0.123 0.877 44 H 0.142 0.858 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.001 -19.167 0.162 37.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.239 6.239 3 C 0.104 3.896 4 C -0.247 4.247 5 C -0.024 4.024 6 N -0.212 5.212 7 C -0.038 4.038 8 C 0.354 3.646 9 O -0.445 6.445 10 N -0.343 5.343 11 C 0.046 3.954 12 C -0.112 4.112 13 C -0.116 4.116 14 C -0.134 4.134 15 C -0.087 4.087 16 C 0.060 3.940 17 N -0.382 5.382 18 C -0.379 4.379 19 H 0.097 0.903 20 C -0.267 4.267 21 N -0.620 5.620 22 Si 0.805 3.195 23 H -0.188 1.188 24 H -0.220 1.220 25 H -0.220 1.220 26 C -0.134 4.134 27 C -0.116 4.116 28 C -0.183 4.183 29 H 0.138 0.862 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.199 0.801 33 H 0.218 0.782 34 H 0.257 0.743 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.159 0.841 38 H 0.141 0.859 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.205 0.795 42 H 0.060 0.940 43 H 0.141 0.859 44 H 0.159 0.841 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -31.005 -19.097 0.158 36.415 hybrid contribution 0.369 0.240 -0.003 0.440 sum -30.636 -18.857 0.155 35.975 Atomic orbital electron populations 1.23543 0.75070 1.06315 1.03216 1.86096 1.24571 1.25730 1.87474 1.19289 0.91608 0.86079 0.92666 1.22806 1.03616 0.91866 1.06390 1.23251 0.88788 0.99048 0.91281 1.67610 1.08854 1.30596 1.14095 1.20668 0.93430 0.89455 1.00198 1.18071 0.86605 0.83497 0.76431 1.90781 1.64348 1.37589 1.51797 1.45868 1.07641 1.08341 1.72439 1.20193 0.79603 0.92092 1.03560 1.19759 1.02908 0.95002 0.93495 1.21200 0.98324 0.93725 0.98327 1.21172 0.99479 0.95113 0.97641 1.20178 0.98226 0.96033 0.94220 1.19767 0.84383 0.91212 0.98661 1.42547 1.01051 1.05146 1.89443 1.19722 0.90331 0.86428 1.41432 0.90305 1.25611 0.96832 1.00758 1.03481 1.69851 1.04156 1.28654 1.59363 0.85034 0.78301 0.79504 0.76659 1.18804 1.22011 1.22000 1.21171 0.99466 0.95188 0.97578 1.21198 0.98304 0.93679 0.98394 1.21379 0.93304 0.99103 1.04525 0.86163 0.90623 0.90630 0.80139 0.78171 0.74343 0.90128 0.90116 0.84071 0.85917 0.95094 0.95088 0.79508 0.93987 0.85912 0.84070 0.84036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.84 113.37 1.12 1.15 16 2 O -0.33 -4.22 10.51 -90.76 -0.95 -5.18 16 3 C 0.16 2.28 6.73 22.74 0.15 2.44 16 4 C -0.23 -1.95 9.12 22.52 0.21 -1.75 16 5 C 0.14 1.42 11.17 84.74 0.95 2.36 16 6 N -0.50 -8.64 9.54 -185.14 -1.77 -10.41 16 7 C 0.10 2.09 6.75 41.85 0.28 2.37 16 8 C 0.57 14.00 7.81 86.89 0.68 14.67 16 9 O -0.57 -17.31 16.32 -3.75 -0.06 -17.38 16 10 N -0.69 -14.73 5.54 -469.37 -2.60 -17.33 16 11 C 0.17 3.67 5.80 85.63 0.50 4.17 16 12 C -0.11 -2.67 5.25 -19.87 -0.10 -2.78 16 13 C -0.10 -2.49 9.70 22.27 0.22 -2.28 16 14 C -0.12 -3.57 9.70 22.27 0.22 -3.36 16 15 C -0.09 -2.98 5.25 -19.86 -0.10 -3.09 16 16 C 0.19 7.65 6.38 85.64 0.55 8.20 16 17 N -0.74 -38.63 5.59 -347.19 -1.94 -40.57 16 18 C -0.25 -14.03 9.99 84.03 0.84 -13.19 16 19 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 20 C -0.07 -4.34 5.50 84.86 0.47 -3.87 16 21 N -0.97 -60.40 13.06 21.65 0.28 -60.11 16 22 Si 0.98 46.44 29.55 68.60 2.03 48.47 16 23 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 25 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 26 C -0.12 -3.57 9.70 22.27 0.22 -3.36 16 27 C -0.10 -2.49 9.70 22.27 0.22 -2.27 16 28 C -0.16 -3.19 9.60 22.72 0.22 -2.97 16 29 H 0.12 0.00 8.14 -2.38 -0.02 -0.02 16 30 H 0.08 0.01 7.70 -2.39 -0.02 -0.01 16 31 H 0.08 0.01 7.72 -2.39 -0.02 -0.01 16 32 H 0.18 0.15 6.45 -2.91 -0.02 0.13 16 33 H 0.20 0.61 8.06 -2.91 -0.02 0.59 16 34 H 0.42 8.12 7.79 -92.71 -0.72 7.40 16 35 H 0.08 1.77 8.08 -2.39 -0.02 1.75 16 36 H 0.08 1.77 8.08 -2.38 -0.02 1.75 16 37 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 38 H 0.12 3.74 8.06 -2.91 -0.02 3.72 16 39 H 0.03 1.26 8.09 -2.39 -0.02 1.24 16 40 H 0.03 1.26 8.08 -2.39 -0.02 1.24 16 41 H 0.37 21.05 7.66 -92.71 -0.71 20.34 16 42 H 0.25 15.10 8.31 -92.70 -0.77 14.33 16 43 H 0.12 3.74 8.06 -2.91 -0.02 3.72 16 44 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 45 H 0.14 3.07 7.64 -2.91 -0.02 3.04 16 Total: -1.00 -75.32 391.29 1.19 -74.13 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: -0.40 Total: 31.92 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 6.60 Total: -3.54 kcal Atomic # 7 Polarization: -122.40 SS G_CDS: -6.03 Total: -128.42 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -1.02 Total: -22.55 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -75.32 1.19 -74.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267937475.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.314 kcal (2) G-P(sol) polarization free energy of solvation -75.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds