Wall clock time and date at job start Sat Apr 11 2020 06:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35648 * 116.99953 * 2 1 4 4 C 1.39345 * 120.53990 * 359.97438 * 3 2 1 5 5 C 1.38299 * 118.43839 * 179.97438 * 4 3 2 6 6 C 1.38765 * 119.44448 * 359.97438 * 5 4 3 7 7 N 1.31370 * 121.06946 * 359.97438 * 6 5 4 8 8 C 1.32862 * 121.69556 * 0.02562 * 7 6 5 9 9 C 1.47829 * 119.78422 * 179.97438 * 8 7 6 10 10 O 1.21553 * 120.00085 * 180.02562 * 9 8 7 11 11 N 1.34782 * 120.00059 * 0.02562 * 9 8 7 12 12 C 1.46495 * 120.00124 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.47415 * 179.97438 * 12 11 9 14 14 C 1.38236 * 120.00299 * 269.73450 * 13 12 11 15 15 C 1.38229 * 119.99783 * 179.76412 * 14 13 12 16 16 C 1.38238 * 120.00289 * 0.48063 * 15 14 13 17 17 C 1.50696 * 120.00281 * 179.76946 * 16 15 14 18 18 N 1.46501 * 109.47275 * 270.01944 * 17 16 15 19 19 C 1.36936 * 120.00502 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99288 * 0.02562 * 19 18 17 21 21 C 1.38810 * 120.00225 * 179.97438 * 19 18 17 22 22 N 1.31621 * 120.00020 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99813 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47029 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46677 * 120.00325 * 23 21 19 26 26 H 1.48500 * 109.46998 * 240.00368 * 23 21 19 27 27 C 1.38239 * 119.99864 * 359.79098 * 16 15 14 28 28 C 1.38233 * 119.99540 * 89.99778 * 13 12 11 29 29 H 1.08997 * 109.47164 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46949 * 300.00245 * 1 2 3 31 31 H 1.08995 * 109.46979 * 60.00328 * 1 2 3 32 32 H 1.07995 * 120.78114 * 359.95867 * 4 3 2 33 33 H 1.07999 * 120.28076 * 179.97438 * 5 4 3 34 34 H 1.07998 * 119.46417 * 179.72630 * 6 5 4 35 35 H 0.96999 * 119.99563 * 359.97438 * 11 9 8 36 36 H 1.09000 * 109.47586 * 299.99923 * 12 11 9 37 37 H 1.09006 * 109.46888 * 60.00019 * 12 11 9 38 38 H 1.07997 * 119.99667 * 359.97438 * 14 13 12 39 39 H 1.08002 * 119.99827 * 180.24680 * 15 14 13 40 40 H 1.08995 * 109.46952 * 30.01858 * 17 16 15 41 41 H 1.09000 * 109.47196 * 150.02736 * 17 16 15 42 42 H 0.97004 * 119.99458 * 0.02562 * 18 17 16 43 43 H 0.97002 * 119.99749 * 179.97438 * 22 21 19 44 44 H 1.07994 * 120.00335 * 179.97438 * 27 16 15 45 45 H 1.08003 * 120.00205 * 0.02562 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2970 2.3844 -0.0005 5 6 1.9696 3.5928 0.0000 6 6 3.3572 3.6011 0.0016 7 7 4.0419 2.4799 0.0032 8 6 3.4410 1.2950 0.0027 9 6 4.2531 0.0598 0.0039 10 8 3.7074 -1.0264 0.0030 11 7 5.5987 0.1379 0.0059 12 6 6.4035 -1.0862 0.0076 13 6 7.8667 -0.7254 0.0091 14 6 8.5406 -0.5661 -1.1873 15 6 9.8815 -0.2304 -1.1858 16 6 10.5511 -0.0637 0.0121 17 6 12.0142 0.2972 0.0136 18 7 12.8191 -0.9269 0.0154 19 6 14.1862 -0.8475 0.0165 20 1 14.6709 0.1176 0.0165 21 6 14.9488 -2.0074 0.0187 22 7 14.3579 -3.1835 0.0191 23 14 16.8137 -1.8990 0.0209 24 1 17.2265 -0.4726 0.0206 25 1 17.3468 -2.5679 1.2348 26 1 17.3500 -2.5703 -1.1903 27 6 9.8785 -0.2286 1.2085 28 6 8.5363 -0.5591 1.2070 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2175 2.3527 -0.0016 33 1 1.4195 4.5222 -0.0008 34 1 3.8828 4.5446 -0.0024 35 1 6.0341 1.0047 0.0063 36 1 6.1725 -1.6717 0.8975 37 1 6.1751 -1.6724 -0.8825 38 1 8.0185 -0.7005 -2.1231 39 1 10.4070 -0.1020 -2.1206 40 1 12.2449 0.8825 -0.8764 41 1 12.2428 0.8835 0.9036 42 1 12.3836 -1.7937 0.0150 43 1 14.8908 -3.9940 0.0203 44 1 10.4016 -0.0988 2.1444 45 1 8.0109 -0.6882 2.1418 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267940757.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:11 Heat of formation + Delta-G solvation = -17.761534 kcal Electronic energy + Delta-G solvation = -27404.514459 eV Core-core repulsion = 23386.831916 eV Total energy + Delta-G solvation = -4017.682542 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.95861 -40.67987 -39.86599 -39.16723 -36.93148 -35.74409 -33.87192 -33.30022 -32.01081 -31.85174 -31.55680 -28.67648 -28.22309 -26.39193 -25.21033 -24.04814 -23.76357 -23.62429 -21.84736 -21.68454 -19.54970 -19.32621 -18.78082 -18.19610 -17.13321 -17.07819 -16.75010 -16.66081 -16.58336 -16.21888 -15.85193 -15.76553 -15.30714 -15.24114 -15.03142 -14.78831 -14.56656 -14.43441 -14.33891 -13.98087 -13.69613 -13.44596 -13.36935 -13.09527 -12.98522 -12.79628 -12.46034 -12.41337 -12.14014 -11.96029 -11.91198 -11.72780 -11.37407 -10.99656 -10.84244 -10.68307 -10.16603 -9.81685 -9.64252 -9.50313 -9.03179 -7.95624 -5.26090 -0.37367 0.21650 0.24487 0.51016 1.47785 1.48987 1.59365 1.73638 2.09977 2.21107 2.55562 2.81921 2.87009 3.23671 3.37639 3.59182 3.64317 3.77300 3.89371 4.00515 4.04510 4.13312 4.20427 4.24710 4.28362 4.29237 4.35287 4.46650 4.56610 4.67144 4.69386 4.71282 4.89688 4.90005 4.90518 5.01574 5.07318 5.20103 5.34571 5.41764 5.45647 5.48130 5.60319 5.81004 6.06255 6.19826 6.25107 6.42473 6.79851 7.17208 7.31655 8.04621 8.29949 9.27918 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.029527 B = 0.001693 C = 0.001631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.048796 B =16533.913195 C =17166.865281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.309 6.309 3 C 0.123 3.877 4 C -0.172 4.172 5 C -0.087 4.087 6 C 0.052 3.948 7 N -0.440 5.440 8 C 0.002 3.998 9 C 0.565 3.435 10 O -0.557 6.557 11 N -0.700 5.700 12 C 0.171 3.829 13 C -0.110 4.110 14 C -0.098 4.098 15 C -0.114 4.114 16 C -0.086 4.086 17 C 0.186 3.814 18 N -0.739 5.739 19 C -0.248 4.248 20 H 0.079 0.921 21 C -0.076 4.076 22 N -0.970 5.970 23 Si 0.978 3.022 24 H -0.264 1.264 25 H -0.293 1.293 26 H -0.293 1.293 27 C -0.114 4.114 28 C -0.098 4.098 29 H 0.111 0.889 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.178 0.822 33 H 0.187 0.813 34 H 0.195 0.805 35 H 0.415 0.585 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.140 0.860 39 H 0.124 0.876 40 H 0.032 0.968 41 H 0.032 0.968 42 H 0.373 0.627 43 H 0.251 0.749 44 H 0.124 0.876 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.065 16.600 -0.053 37.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.220 6.220 3 C 0.072 3.928 4 C -0.198 4.198 5 C -0.107 4.107 6 C -0.110 4.110 7 N -0.152 5.152 8 C -0.134 4.134 9 C 0.352 3.648 10 O -0.435 6.435 11 N -0.352 5.352 12 C 0.048 3.952 13 C -0.111 4.111 14 C -0.117 4.117 15 C -0.133 4.133 16 C -0.087 4.087 17 C 0.060 3.940 18 N -0.382 5.382 19 C -0.379 4.379 20 H 0.097 0.903 21 C -0.268 4.268 22 N -0.621 5.621 23 Si 0.806 3.194 24 H -0.188 1.188 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.133 4.133 28 C -0.117 4.117 29 H 0.129 0.871 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.195 0.805 33 H 0.205 0.795 34 H 0.212 0.788 35 H 0.252 0.748 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.158 0.842 39 H 0.142 0.858 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.205 0.795 43 H 0.060 0.940 44 H 0.142 0.858 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -33.287 15.664 -0.051 36.788 hybrid contribution 0.343 -0.298 0.000 0.454 sum -32.944 15.367 -0.051 36.352 Atomic orbital electron populations 1.23520 0.76148 1.05859 1.02977 1.86375 1.23561 1.25553 1.86461 1.20290 0.92160 0.86870 0.93489 1.22179 1.02626 0.90822 1.04218 1.22735 0.95273 0.99716 0.92945 1.23385 0.92700 0.96395 0.98502 1.67559 1.40908 0.97750 1.08992 1.20428 0.89259 0.92613 1.11098 1.18042 0.82420 0.87841 0.76520 1.90800 1.72402 1.29124 1.51197 1.45855 1.05076 1.10595 1.73706 1.20108 0.85437 0.86538 1.03090 1.19772 0.94896 1.02844 0.93549 1.21183 0.93816 0.98381 0.98291 1.21167 0.94808 0.99680 0.97643 1.20177 0.95317 0.99031 0.94171 1.19763 0.86452 0.89075 0.98686 1.42555 1.02640 1.03555 1.89445 1.19727 0.83737 0.93026 1.41414 0.90266 1.25633 1.02752 0.94944 1.03508 1.69853 1.35674 0.97158 1.59366 0.85011 0.79863 0.77827 0.76653 1.18801 1.22003 1.21991 1.21168 0.94773 0.99701 0.97657 1.21185 0.93821 0.98390 0.98274 0.87092 0.90604 0.90594 0.80462 0.79545 0.78832 0.74765 0.90588 0.90596 0.84215 0.85849 0.95055 0.95054 0.79519 0.93982 0.85848 0.84213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.83 113.37 1.11 1.20 16 2 O -0.31 -6.49 8.56 -68.63 -0.59 -7.08 16 3 C 0.12 2.33 6.71 22.93 0.15 2.49 16 4 C -0.17 -1.64 9.13 22.55 0.21 -1.44 16 5 C -0.09 -0.54 10.10 22.41 0.23 -0.31 16 6 C 0.05 0.57 11.17 84.89 0.95 1.51 16 7 N -0.44 -8.32 9.54 -184.64 -1.76 -10.08 16 8 C 0.00 0.06 6.76 41.93 0.28 0.34 16 9 C 0.57 15.65 7.80 86.78 0.68 16.33 16 10 O -0.56 -18.83 15.14 17.11 0.26 -18.58 16 11 N -0.70 -16.87 5.54 -469.71 -2.60 -19.47 16 12 C 0.17 4.16 5.80 85.63 0.50 4.66 16 13 C -0.11 -2.85 5.25 -19.87 -0.10 -2.95 16 14 C -0.10 -2.67 9.70 22.27 0.22 -2.45 16 15 C -0.11 -3.66 9.70 22.27 0.22 -3.45 16 16 C -0.09 -3.08 5.25 -19.87 -0.10 -3.18 16 17 C 0.19 7.80 6.38 85.63 0.55 8.34 16 18 N -0.74 -39.06 5.59 -347.19 -1.94 -41.01 16 19 C -0.25 -14.14 9.99 84.03 0.84 -13.30 16 20 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 21 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 22 N -0.97 -60.85 13.06 21.65 0.28 -60.57 16 23 Si 0.98 46.79 29.55 68.60 2.03 48.82 16 24 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 25 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 26 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 27 C -0.11 -3.67 9.70 22.27 0.22 -3.45 16 28 C -0.10 -2.67 9.70 22.27 0.22 -2.45 16 29 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 0.37 7.70 -2.38 -0.02 0.35 16 31 H 0.08 0.37 7.70 -2.39 -0.02 0.35 16 32 H 0.18 0.45 6.46 -2.91 -0.02 0.43 16 33 H 0.19 -0.45 8.06 -2.91 -0.02 -0.48 16 34 H 0.19 0.82 8.06 -2.91 -0.02 0.80 16 35 H 0.42 9.20 7.79 -92.71 -0.72 8.48 16 36 H 0.08 1.87 8.09 -2.39 -0.02 1.85 16 37 H 0.08 1.87 8.08 -2.38 -0.02 1.85 16 38 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 39 H 0.12 3.87 8.06 -2.91 -0.02 3.85 16 40 H 0.03 1.29 8.09 -2.39 -0.02 1.27 16 41 H 0.03 1.29 8.09 -2.39 -0.02 1.27 16 42 H 0.37 21.27 7.66 -92.71 -0.71 20.56 16 43 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 44 H 0.12 3.87 8.06 -2.91 -0.02 3.85 16 45 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -79.29 389.05 1.89 -77.39 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: -0.40 Total: 32.70 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: 6.62 Total: -2.12 kcal Atomic # 7 Polarization: -125.11 SS G_CDS: -6.02 Total: -131.13 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.33 Total: -25.65 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -79.29 1.89 -77.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267940757.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.631 kcal (2) G-P(sol) polarization free energy of solvation -79.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds