Wall clock time and date at job start Sat Apr 11 2020 06:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86803 * 120.00275 * 2 1 4 4 H 1.48496 * 109.47183 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46839 * 300.00085 * 3 2 1 6 6 H 1.48498 * 109.46930 * 59.99878 * 3 2 1 7 7 C 1.38799 * 119.99626 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00083 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00343 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00324 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47245 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00054 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00364 * 180.02562 * 11 10 9 14 14 C 1.47074 * 120.88785 * 180.02562 * 13 11 10 15 15 C 1.53232 * 108.52620 * 231.20811 * 14 13 11 16 16 N 1.46906 * 109.33893 * 306.17015 * 15 14 13 17 17 C 1.46901 * 110.99853 * 187.25322 * 16 15 14 18 18 C 1.50701 * 109.46921 * 169.99766 * 17 16 15 19 19 O 1.21280 * 119.99781 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99795 * 179.97438 * 18 17 16 21 21 C 1.47015 * 125.64739 * 359.69531 * 20 18 17 22 22 C 1.54317 * 107.27421 * 180.96561 * 21 20 18 23 23 C 1.55158 * 102.86406 * 22.52382 * 22 21 20 24 24 C 1.47427 * 125.64341 * 180.02562 * 20 18 17 25 25 C 1.46901 * 111.26879 * 63.10413 * 16 15 14 26 26 C 1.47085 * 120.87831 * 0.02562 * 13 11 10 27 27 H 0.97004 * 119.99754 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46939 * 60.00134 * 10 9 7 29 29 H 1.08993 * 109.46840 * 300.00397 * 10 9 7 30 30 H 1.09008 * 109.63018 * 111.49044 * 14 13 11 31 31 H 1.09005 * 109.62489 * 350.92081 * 14 13 11 32 32 H 1.09005 * 109.49978 * 186.20928 * 15 14 13 33 33 H 1.09002 * 109.51399 * 66.14029 * 15 14 13 34 34 H 1.09002 * 109.47401 * 49.99794 * 17 16 15 35 35 H 1.09001 * 109.46874 * 289.99807 * 17 16 15 36 36 H 1.08996 * 109.88974 * 300.50898 * 21 20 18 37 37 H 1.09001 * 109.88432 * 61.68194 * 21 20 18 38 38 H 1.09000 * 110.92402 * 264.11410 * 22 21 20 39 39 H 1.08995 * 110.59542 * 140.78892 * 22 21 20 40 40 H 1.08992 * 111.00807 * 206.22791 * 23 22 21 41 41 H 1.09007 * 111.00013 * 82.37481 * 23 22 21 42 42 H 1.08994 * 110.36767 * 274.67328 * 24 20 18 43 43 H 1.08998 * 110.36804 * 36.89416 * 24 20 18 44 44 H 1.08991 * 109.49343 * 56.85123 * 25 16 15 45 45 H 1.09000 * 109.49162 * 176.93632 * 25 16 15 46 46 H 1.08995 * 109.62730 * 248.50606 * 26 13 11 47 47 H 1.08999 * 109.62628 * 9.08486 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 16 1.1292 -2.7280 -0.0019 10 6 2.5157 -3.8915 -0.0013 11 6 1.9872 -5.3027 -0.0018 12 8 0.7909 -5.5023 -0.0028 13 7 2.8438 -6.3432 -0.0009 14 6 2.3493 -7.7283 -0.0019 15 6 3.0415 -8.4932 1.1313 16 7 4.4974 -8.3533 0.9942 17 6 5.2015 -9.2106 1.9572 18 6 6.6724 -9.2312 1.6296 19 8 7.0927 -8.5940 0.6871 20 7 7.5208 -9.9568 2.3847 21 6 7.1489 -10.7655 3.5548 22 6 8.4453 -11.3928 4.1090 23 6 9.5471 -10.4440 3.5674 24 6 8.9765 -10.0654 2.1781 25 6 4.9137 -6.9515 1.1346 26 6 4.2982 -6.1236 0.0009 27 1 -0.4850 0.8401 -0.0004 28 1 3.1236 -3.7319 0.8892 29 1 3.1250 -3.7310 -0.8907 30 1 2.5816 -8.1994 -0.9570 31 1 1.2712 -7.7323 0.1588 32 1 2.7706 -9.5476 1.0770 33 1 2.7257 -8.0855 2.0916 34 1 4.8027 -10.2235 1.9015 35 1 5.0590 -8.8188 2.9643 36 1 6.6884 -10.1316 4.3124 37 1 6.4567 -11.5528 3.2564 38 1 8.5839 -12.4034 3.7250 39 1 8.4366 -11.3911 5.1989 40 1 10.4990 -10.9660 3.4700 41 1 9.6497 -9.5627 4.2007 42 1 9.1993 -10.8464 1.4512 43 1 9.3848 -9.1110 1.8457 44 1 4.5718 -6.5650 2.0946 45 1 6.0006 -6.8879 1.0826 46 1 4.7176 -6.4406 -0.9538 47 1 4.5086 -5.0665 0.1636 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041776555.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:30 Heat of formation + Delta-G solvation = -47.148998 kcal Electronic energy + Delta-G solvation = -27282.369409 eV Core-core repulsion = 23398.856482 eV Total energy + Delta-G solvation = -3883.512927 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.63209 -39.73420 -38.18644 -37.16495 -34.44735 -32.40448 -32.28721 -31.56252 -29.94620 -29.40209 -28.31174 -25.60967 -25.31596 -23.75952 -23.51273 -21.74959 -21.26316 -19.66347 -18.93887 -17.67535 -17.52749 -17.13040 -16.69787 -15.99158 -15.50690 -15.44069 -15.35195 -14.97485 -14.78254 -14.74704 -14.27293 -13.99028 -13.90355 -13.78918 -13.38648 -13.18419 -13.08266 -12.75159 -12.59633 -12.30316 -12.13493 -11.94202 -11.81104 -11.77349 -11.39990 -11.35389 -11.34135 -11.23997 -11.05106 -10.98215 -10.72568 -10.06200 -9.76669 -9.30725 -9.08365 -9.05065 -8.75954 -8.34116 -8.18969 -6.47135 -6.19342 -3.89454 2.30446 2.44105 2.96920 3.10196 3.23383 3.28067 3.33167 3.56864 3.68893 3.90523 3.99087 4.22684 4.30829 4.38689 4.64801 4.68631 4.76969 4.80246 4.85254 4.88068 5.02838 5.05728 5.15580 5.15799 5.16187 5.25723 5.28546 5.31998 5.33386 5.39380 5.40343 5.57191 5.58059 5.70525 5.78342 5.84203 5.88436 5.92873 6.02241 6.16643 6.55263 6.66252 6.78005 7.09151 7.62092 7.64288 7.85585 8.38098 8.60981 9.26126 10.88144 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017909 B = 0.002082 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.102080 B =13446.896028 C =14529.282392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.533 4.533 8 H 0.073 0.927 9 S -0.062 6.062 10 C -0.150 4.150 11 C 0.536 3.464 12 O -0.519 6.519 13 N -0.623 5.623 14 C 0.120 3.880 15 C 0.044 3.956 16 N -0.521 5.521 17 C 0.042 3.958 18 C 0.530 3.470 19 O -0.516 6.516 20 N -0.625 5.625 21 C 0.098 3.902 22 C -0.132 4.132 23 C -0.135 4.135 24 C 0.106 3.894 25 C 0.037 3.963 26 C 0.117 3.883 27 H 0.267 0.733 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.041 0.959 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.036 0.964 45 H 0.102 0.898 46 H 0.077 0.923 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.490 -26.415 9.250 33.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.682 4.682 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.301 4.301 11 C 0.324 3.676 12 O -0.394 6.394 13 N -0.359 5.359 14 C -0.004 4.004 15 C -0.085 4.085 16 N -0.247 5.247 17 C -0.089 4.089 18 C 0.318 3.682 19 O -0.390 6.390 20 N -0.363 5.363 21 C -0.026 4.026 22 C -0.170 4.170 23 C -0.173 4.173 24 C -0.017 4.017 25 C -0.091 4.091 26 C -0.007 4.007 27 H 0.077 0.923 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.104 0.896 33 H 0.060 0.940 34 H 0.122 0.878 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.054 0.946 45 H 0.120 0.880 46 H 0.095 0.905 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 16.813 -26.337 8.195 32.303 hybrid contribution 1.852 1.370 0.948 2.492 sum 18.666 -24.967 9.143 32.486 Atomic orbital electron populations 1.70033 1.05938 1.27292 1.47044 1.24997 0.95035 0.99028 0.94591 0.86116 0.79614 0.81893 0.77874 1.19602 1.20559 1.20603 1.22908 0.94941 0.91626 1.58695 0.90887 1.85379 1.05086 0.96352 1.96686 1.23547 1.06417 0.95405 1.04717 1.20324 0.86168 0.86195 0.74940 1.90681 1.15164 1.85257 1.48304 1.48196 1.06572 1.05749 1.75420 1.21572 0.99705 0.80987 0.98088 1.22545 0.86494 1.00960 0.98482 1.61621 1.05393 1.07848 1.49798 1.21914 0.91421 1.00083 0.95456 1.20265 0.87793 0.78328 0.81816 1.90709 1.78189 1.42007 1.28106 1.48563 1.08316 1.48823 1.30552 1.22068 0.98039 0.94608 0.87835 1.22638 0.93654 0.99346 1.01376 1.22802 0.98573 0.99973 0.95955 1.22206 0.79993 1.02280 0.97204 1.22686 1.02194 0.86768 0.97478 1.21774 0.79476 1.00308 0.99093 0.92273 0.89383 0.89175 0.90985 0.88434 0.89556 0.94032 0.87809 0.91899 0.91254 0.91197 0.90341 0.89831 0.89654 0.90481 0.91430 0.90262 0.94609 0.87992 0.90454 0.88958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.48 13.22 55.49 0.73 -25.75 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.72 29.55 -169.99 -5.02 16.70 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.53 -15.45 9.50 30.94 0.29 -15.16 16 8 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 9 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 10 C -0.15 -3.19 4.52 36.00 0.16 -3.03 16 11 C 0.54 10.71 7.73 -10.99 -0.08 10.63 16 12 O -0.52 -12.22 15.31 5.56 0.09 -12.14 16 13 N -0.62 -9.71 3.01 -172.44 -0.52 -10.23 16 14 C 0.12 1.56 6.60 -3.61 -0.02 1.54 16 15 C 0.04 0.45 5.62 -3.70 -0.02 0.43 16 16 N -0.52 -5.68 4.37 -235.73 -1.03 -6.71 16 17 C 0.04 0.35 4.64 -4.97 -0.02 0.33 16 18 C 0.53 5.34 7.51 -10.98 -0.08 5.26 16 19 O -0.52 -7.20 14.58 5.56 0.08 -7.12 16 20 N -0.63 -4.62 3.33 -170.54 -0.57 -5.19 16 21 C 0.10 0.40 6.48 -3.07 -0.02 0.38 16 22 C -0.13 -0.36 6.95 -24.90 -0.17 -0.53 16 23 C -0.13 -0.49 7.08 -24.59 -0.17 -0.66 16 24 C 0.11 0.67 6.91 -2.54 -0.02 0.65 16 25 C 0.04 0.44 5.26 -3.68 -0.02 0.42 16 26 C 0.12 1.56 6.51 -3.58 -0.02 1.54 16 27 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.09 1.73 7.66 -51.92 -0.40 1.34 16 29 H 0.09 1.79 8.00 -51.92 -0.42 1.38 16 30 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 31 H 0.10 1.38 7.06 -51.93 -0.37 1.01 16 32 H 0.09 0.67 7.99 -51.93 -0.41 0.26 16 33 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.10 0.64 7.97 -51.93 -0.41 0.23 16 35 H 0.06 0.45 8.12 -51.93 -0.42 0.03 16 36 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 39 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 40 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.08 0.30 8.14 -51.92 -0.42 -0.12 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.61 8.03 -51.93 -0.42 0.19 16 44 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.10 1.29 5.76 -51.93 -0.30 0.99 16 46 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.09 1.21 6.02 -51.93 -0.31 0.90 16 LS Contribution 388.37 15.07 5.85 5.85 Total: -1.00 -37.21 388.37 -10.56 -47.77 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -7.65 Total: -3.06 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -0.30 Total: 3.80 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -1.38 Total: -47.88 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: 0.17 Total: -19.26 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.21 -10.56 -47.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041776555.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.618 kcal (2) G-P(sol) polarization free energy of solvation -37.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds