Wall clock time and date at job start Sat Apr 11 2020 06:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 120.00210 * 2 1 4 4 H 1.48498 * 109.47143 * 239.99588 * 3 2 1 5 5 H 1.48507 * 109.46825 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47346 * 119.99303 * 3 2 1 7 7 C 1.37877 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99974 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99879 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47176 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00094 * 90.00046 * 10 9 7 12 12 O 1.21286 * 119.99940 * 5.17700 * 11 10 9 13 13 C 1.50704 * 120.00116 * 185.17905 * 11 10 9 14 14 N 1.46901 * 109.47130 * 185.53276 * 13 11 10 15 15 C 1.46967 * 111.00126 * 58.23176 * 14 13 11 16 16 C 1.53459 * 109.74818 * 165.13702 * 15 14 13 17 17 N 1.46306 * 108.17826 * 49.59858 * 16 15 14 18 18 C 1.34416 * 129.75735 * 163.61551 * 17 16 15 19 19 N 1.31135 * 107.01509 * 180.31100 * 18 17 16 20 20 N 1.28991 * 109.73972 * 359.85885 * 19 18 17 21 21 C 1.29639 * 109.46615 * 0.03030 * 20 19 18 22 22 C 1.47390 * 111.00055 * 293.95341 * 14 13 11 23 23 C 1.39925 * 120.00104 * 270.00468 * 10 9 7 24 24 C 1.38876 * 120.07278 * 111.17190 * 23 10 9 25 25 C 1.38113 * 119.92853 * 179.76439 * 24 23 10 26 26 C 1.38290 * 120.07056 * 0.48890 * 25 24 23 27 27 C 1.38278 * 120.14030 * 359.76377 * 26 25 24 28 28 C 1.38111 * 120.07169 * 359.97438 * 27 26 25 29 29 H 0.96998 * 120.00019 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.47218 * 60.00241 * 9 7 2 31 31 H 1.08995 * 109.47331 * 299.99935 * 9 7 2 32 32 H 1.08995 * 109.46877 * 65.53295 * 13 11 10 33 33 H 1.09000 * 109.46941 * 305.53096 * 13 11 10 34 34 H 1.09000 * 109.42835 * 285.22661 * 15 14 13 35 35 H 1.09009 * 109.42283 * 45.05383 * 15 14 13 36 36 H 1.09005 * 109.72176 * 169.26814 * 16 15 14 37 37 H 1.08998 * 109.71889 * 289.88630 * 16 15 14 38 38 H 1.07994 * 126.48857 * 0.18373 * 18 17 16 39 39 H 1.08998 * 109.75538 * 293.85349 * 22 14 13 40 40 H 1.09002 * 109.75076 * 54.54451 * 22 14 13 41 41 H 1.08000 * 120.03298 * 359.96876 * 24 23 10 42 42 H 1.07996 * 119.96398 * 180.24682 * 25 24 23 43 43 H 1.07998 * 119.92653 * 179.74442 * 26 25 24 44 44 H 1.07996 * 119.96671 * 179.97438 * 27 26 25 45 45 H 1.08003 * 120.03885 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0018 11 6 2.6400 -4.1243 1.1695 12 8 2.1755 -3.7273 2.2172 13 6 3.7059 -5.1897 1.1735 14 7 3.9111 -5.6719 2.5458 15 6 2.6624 -6.2040 3.1094 16 6 2.9704 -7.0248 4.3689 17 7 3.8367 -6.2245 5.2348 18 6 4.1275 -6.3778 6.5381 19 7 4.9453 -5.4065 6.8656 20 7 5.1764 -4.6655 5.8354 21 6 4.5219 -5.1269 4.8158 22 6 4.4731 -4.6105 3.4001 23 6 2.6587 -4.1449 -1.2094 24 6 3.9812 -3.9670 -1.5940 25 6 4.4290 -4.4978 -2.7878 26 6 3.5595 -5.1972 -3.6047 27 6 2.2408 -5.3715 -3.2271 28 6 1.7881 -4.8479 -2.0320 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8902 32 1 4.6377 -4.7728 0.7917 33 1 3.3925 -6.0195 0.5399 34 1 2.0003 -5.3777 3.3681 35 1 2.1744 -6.8412 2.3718 36 1 2.0428 -7.2586 4.8916 37 1 3.4788 -7.9481 4.0911 38 1 3.7561 -7.1528 7.1921 39 1 5.4796 -4.3613 3.0640 40 1 3.8391 -3.7251 3.3527 41 1 4.6596 -3.4169 -0.9587 42 1 5.4584 -4.3632 -3.0856 43 1 3.9111 -5.6077 -4.5396 44 1 1.5640 -5.9178 -3.8673 45 1 0.7578 -4.9840 -1.7377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000105877673.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:48 Heat of formation + Delta-G solvation = 104.066496 kcal Electronic energy + Delta-G solvation = -29993.510233 eV Core-core repulsion = 26013.403302 eV Total energy + Delta-G solvation = -3980.106931 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.18787 -40.42474 -38.86352 -37.30185 -35.12001 -34.43787 -32.82199 -31.46705 -30.84658 -30.15581 -29.53228 -28.39636 -26.76667 -24.95319 -23.61773 -22.83713 -22.56065 -22.28292 -21.87588 -19.82816 -19.18765 -17.59555 -17.24279 -16.71440 -16.63432 -16.24216 -15.80851 -15.66813 -15.12864 -15.08551 -14.83960 -14.44949 -14.40997 -14.13328 -13.83722 -13.49899 -13.28497 -12.94317 -12.81251 -12.45463 -12.40375 -11.95714 -11.84556 -11.59206 -11.55543 -11.32992 -11.28041 -11.06561 -10.95146 -10.71524 -10.38106 -10.32442 -10.16565 -10.09630 -9.86934 -9.21321 -8.86386 -8.81586 -8.53887 -8.17899 -7.86901 -6.16514 -4.22083 1.42177 1.51710 1.88254 2.47692 2.91443 2.95557 3.26358 3.30906 3.33384 3.42507 3.59409 3.89109 4.25117 4.32658 4.35787 4.49555 4.70313 4.76065 4.88650 5.03710 5.06514 5.11067 5.19326 5.23101 5.27239 5.34449 5.44954 5.55749 5.61897 5.69059 5.73998 5.77638 5.84722 5.92882 6.13331 6.18023 6.46031 6.51697 6.60907 6.61147 6.65964 6.80869 6.89368 7.06054 7.19534 7.29961 7.77592 8.05230 8.10789 8.59799 8.77490 8.81720 9.43437 10.91790 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009094 B = 0.004043 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3078.244753 B = 6923.319363 C = 8944.830534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.065 3.935 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.530 4.530 8 H 0.057 0.943 9 C 0.247 3.753 10 N -0.554 5.554 11 C 0.483 3.517 12 O -0.531 6.531 13 C 0.036 3.964 14 N -0.516 5.516 15 C 0.018 3.982 16 C 0.114 3.886 17 N -0.470 5.470 18 C 0.148 3.852 19 N -0.305 5.305 20 N -0.293 5.293 21 C 0.197 3.803 22 C 0.121 3.879 23 C 0.157 3.843 24 C -0.123 4.123 25 C -0.108 4.108 26 C -0.132 4.132 27 C -0.109 4.109 28 C -0.123 4.123 29 H 0.265 0.735 30 H 0.034 0.966 31 H 0.048 0.952 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.217 0.783 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.198 -18.226 -2.242 19.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.569 4.569 8 H 0.076 0.924 9 C 0.129 3.871 10 N -0.282 5.282 11 C 0.270 3.730 12 O -0.409 6.409 13 C -0.095 4.095 14 N -0.239 5.239 15 C -0.110 4.110 16 C -0.009 4.009 17 N -0.161 5.161 18 C -0.140 4.140 19 N -0.145 5.145 20 N -0.133 5.133 21 C -0.071 4.071 22 C -0.009 4.009 23 C 0.065 3.935 24 C -0.142 4.142 25 C -0.127 4.127 26 C -0.150 4.150 27 C -0.128 4.128 28 C -0.143 4.143 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.233 0.767 39 H 0.126 0.874 40 H 0.123 0.877 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.977 -17.397 -0.802 18.413 hybrid contribution -1.134 0.796 -0.862 1.632 sum 4.842 -16.601 -1.663 17.373 Atomic orbital electron populations 1.69905 1.06033 1.27372 1.49813 1.24898 0.94881 0.99252 0.94734 0.86552 0.79597 0.82541 0.78781 1.20115 1.21054 1.20000 1.21279 0.93276 0.90349 1.52004 0.92427 1.19454 0.87255 0.81584 0.98783 1.46078 1.45348 1.34215 1.02572 1.21586 0.83867 0.83613 0.83941 1.90620 1.58155 1.61809 1.30279 1.22385 0.99211 0.97461 0.90452 1.62591 1.26658 1.32935 1.01754 1.22731 0.92597 1.00217 0.95453 1.22148 0.93993 0.94555 0.90219 1.46153 1.36363 1.23700 1.09883 1.26175 1.00971 1.02714 0.84147 1.74604 1.15304 1.03651 1.20935 1.73976 1.21142 1.22608 0.95580 1.24716 0.95339 0.88413 0.98654 1.20981 1.02856 0.94440 0.82600 1.17742 0.92633 0.94856 0.88236 1.21378 0.95760 0.99797 0.97309 1.20999 0.99684 0.97889 0.94139 1.21093 0.93833 1.00350 0.99717 1.20975 0.95836 0.99960 0.96027 1.21293 0.99972 0.97877 0.95164 0.92500 0.94754 0.93398 0.87125 0.87493 0.89539 0.88470 0.88371 0.88787 0.76669 0.87415 0.87685 0.85803 0.85984 0.86296 0.86048 0.85858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.53 -14.35 9.39 -34.44 -0.32 -14.68 16 8 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 9 C 0.25 6.05 5.15 -5.20 -0.03 6.03 16 10 N -0.55 -10.61 2.50 -114.74 -0.29 -10.90 16 11 C 0.48 8.55 6.94 -10.98 -0.08 8.47 16 12 O -0.53 -11.22 11.31 5.55 0.06 -11.16 16 13 C 0.04 0.46 4.34 -4.97 -0.02 0.44 16 14 N -0.52 -6.48 4.86 -236.69 -1.15 -7.63 16 15 C 0.02 0.21 4.86 -3.55 -0.02 0.19 16 16 C 0.11 1.03 7.28 -3.91 -0.03 1.00 16 17 N -0.47 -5.95 3.12 -115.38 -0.36 -6.31 16 18 C 0.15 1.82 12.87 -90.41 -1.16 0.65 16 19 N -0.31 -5.08 12.25 29.58 0.36 -4.72 16 20 N -0.29 -5.32 12.20 32.77 0.40 -4.92 16 21 C 0.20 3.11 7.87 -155.21 -1.22 1.89 16 22 C 0.12 1.79 5.61 -4.67 -0.03 1.76 16 23 C 0.16 2.50 4.37 -83.69 -0.37 2.14 16 24 C -0.12 -1.72 8.51 -39.39 -0.34 -2.05 16 25 C -0.11 -1.25 10.04 -39.61 -0.40 -1.64 16 26 C -0.13 -1.41 10.04 -39.55 -0.40 -1.81 16 27 C -0.11 -1.26 10.04 -39.61 -0.40 -1.66 16 28 C -0.12 -1.74 9.72 -39.39 -0.38 -2.12 16 29 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.03 0.87 7.88 -51.93 -0.41 0.47 16 31 H 0.05 1.32 7.35 -51.93 -0.38 0.94 16 32 H 0.11 1.29 7.01 -51.93 -0.36 0.93 16 33 H 0.11 1.17 7.83 -51.93 -0.41 0.76 16 34 H 0.09 1.29 5.85 -51.93 -0.30 0.99 16 35 H 0.10 0.90 7.99 -51.92 -0.42 0.49 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.22 1.53 8.06 -52.49 -0.42 1.11 16 39 H 0.11 1.45 8.14 -51.93 -0.42 1.02 16 40 H 0.11 1.89 5.66 -51.93 -0.29 1.60 16 41 H 0.12 1.72 7.67 -52.49 -0.40 1.32 16 42 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 45 H 0.12 1.72 8.06 -52.48 -0.42 1.29 16 LS Contribution 370.95 15.07 5.59 5.59 Total: -1.00 -34.66 370.95 -10.85 -45.51 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -5.90 Total: 2.83 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -5.28 Total: 0.31 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: -0.30 Total: -59.52 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.06 Total: -11.16 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.66 -10.85 -45.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105877673.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.576 kcal (2) G-P(sol) polarization free energy of solvation -34.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds