Wall clock time and date at job start Sat Apr 11 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 120.00210 * 2 1 4 4 H 1.48498 * 109.47143 * 239.99588 * 3 2 1 5 5 H 1.48507 * 109.46825 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47346 * 119.99303 * 3 2 1 7 7 C 1.37877 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99974 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99879 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47176 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00094 * 90.00046 * 10 9 7 12 12 O 1.21286 * 119.99940 * 5.17700 * 11 10 9 13 13 C 1.50704 * 120.00116 * 185.17905 * 11 10 9 14 14 N 1.46901 * 109.47130 * 185.53276 * 13 11 10 15 15 C 1.46967 * 111.00126 * 58.23176 * 14 13 11 16 16 C 1.53459 * 109.74818 * 165.13702 * 15 14 13 17 17 N 1.46306 * 108.17826 * 49.59858 * 16 15 14 18 18 C 1.34416 * 129.75735 * 163.61551 * 17 16 15 19 19 N 1.31135 * 107.01509 * 180.31100 * 18 17 16 20 20 N 1.28991 * 109.73972 * 359.85885 * 19 18 17 21 21 C 1.29639 * 109.46615 * 0.03030 * 20 19 18 22 22 C 1.47390 * 111.00055 * 293.95341 * 14 13 11 23 23 C 1.39925 * 120.00104 * 270.00468 * 10 9 7 24 24 C 1.38876 * 120.07278 * 111.17190 * 23 10 9 25 25 C 1.38113 * 119.92853 * 179.76439 * 24 23 10 26 26 C 1.38290 * 120.07056 * 0.48890 * 25 24 23 27 27 C 1.38278 * 120.14030 * 359.76377 * 26 25 24 28 28 C 1.38111 * 120.07169 * 359.97438 * 27 26 25 29 29 H 0.96998 * 120.00019 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.47218 * 60.00241 * 9 7 2 31 31 H 1.08995 * 109.47331 * 299.99935 * 9 7 2 32 32 H 1.08995 * 109.46877 * 65.53295 * 13 11 10 33 33 H 1.09000 * 109.46941 * 305.53096 * 13 11 10 34 34 H 1.09000 * 109.42835 * 285.22661 * 15 14 13 35 35 H 1.09009 * 109.42283 * 45.05383 * 15 14 13 36 36 H 1.09005 * 109.72176 * 169.26814 * 16 15 14 37 37 H 1.08998 * 109.71889 * 289.88630 * 16 15 14 38 38 H 1.07994 * 126.48857 * 0.18373 * 18 17 16 39 39 H 1.08998 * 109.75538 * 293.85349 * 22 14 13 40 40 H 1.09002 * 109.75076 * 54.54451 * 22 14 13 41 41 H 1.08000 * 120.03298 * 359.96876 * 24 23 10 42 42 H 1.07996 * 119.96398 * 180.24682 * 25 24 23 43 43 H 1.07998 * 119.92653 * 179.74442 * 26 25 24 44 44 H 1.07996 * 119.96671 * 179.97438 * 27 26 25 45 45 H 1.08003 * 120.03885 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0018 11 6 2.6400 -4.1243 1.1695 12 8 2.1755 -3.7273 2.2172 13 6 3.7059 -5.1897 1.1735 14 7 3.9111 -5.6719 2.5458 15 6 2.6624 -6.2040 3.1094 16 6 2.9704 -7.0248 4.3689 17 7 3.8367 -6.2245 5.2348 18 6 4.1275 -6.3778 6.5381 19 7 4.9453 -5.4065 6.8656 20 7 5.1764 -4.6655 5.8354 21 6 4.5219 -5.1269 4.8158 22 6 4.4731 -4.6105 3.4001 23 6 2.6587 -4.1449 -1.2094 24 6 3.9812 -3.9670 -1.5940 25 6 4.4290 -4.4978 -2.7878 26 6 3.5595 -5.1972 -3.6047 27 6 2.2408 -5.3715 -3.2271 28 6 1.7881 -4.8479 -2.0320 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8902 32 1 4.6377 -4.7728 0.7917 33 1 3.3925 -6.0195 0.5399 34 1 2.0003 -5.3777 3.3681 35 1 2.1744 -6.8412 2.3718 36 1 2.0428 -7.2586 4.8916 37 1 3.4788 -7.9481 4.0911 38 1 3.7561 -7.1528 7.1921 39 1 5.4796 -4.3613 3.0640 40 1 3.8391 -3.7251 3.3527 41 1 4.6596 -3.4169 -0.9587 42 1 5.4584 -4.3632 -3.0856 43 1 3.9111 -5.6077 -4.5396 44 1 1.5640 -5.9178 -3.8673 45 1 0.7578 -4.9840 -1.7377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000105877673.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:47 Heat of formation + Delta-G solvation = 82.191774 kcal Electronic energy + Delta-G solvation = -29994.458792 eV Core-core repulsion = 26013.403302 eV Total energy + Delta-G solvation = -3981.055491 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.26981 -41.72505 -39.93854 -38.46732 -36.52655 -35.54151 -34.82311 -32.61403 -31.83661 -31.20360 -30.82451 -29.72559 -28.32407 -26.10677 -25.01569 -24.17879 -23.62437 -23.31915 -23.07895 -20.94816 -20.41268 -18.77700 -18.64707 -18.31657 -17.75339 -17.45200 -17.06895 -16.81615 -16.46091 -16.32132 -16.14372 -15.76514 -15.46001 -15.29612 -14.95340 -14.71855 -14.36170 -14.24386 -14.09372 -13.85106 -13.55675 -13.40580 -13.11680 -12.90448 -12.87252 -12.68334 -12.62755 -12.41263 -12.39867 -12.10065 -12.08649 -11.75071 -11.57642 -11.45090 -11.09532 -10.70437 -10.38742 -10.11014 -9.78877 -9.46677 -9.22009 -8.28686 -6.43131 0.39025 0.54462 0.84521 1.32435 1.36119 1.42579 1.54809 1.58678 1.79518 2.13451 2.35114 2.42006 2.89919 3.02217 3.20508 3.42881 3.56238 3.64427 3.90890 4.10286 4.14005 4.16457 4.21502 4.29307 4.35828 4.42383 4.48938 4.50616 4.57927 4.64072 4.69198 4.76131 4.77282 4.89887 5.00045 5.08813 5.10771 5.19589 5.41512 5.45651 5.53621 5.57640 5.67146 5.67503 5.75874 5.96054 5.97179 6.10559 6.61279 6.69317 7.18364 7.32141 7.65539 8.78128 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009094 B = 0.004043 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3078.244753 B = 6923.319363 C = 8944.830534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.013 3.987 3 Si 0.961 3.039 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.541 4.541 8 H 0.054 0.946 9 C 0.267 3.733 10 N -0.559 5.559 11 C 0.476 3.524 12 O -0.574 6.574 13 C 0.054 3.946 14 N -0.499 5.499 15 C 0.014 3.986 16 C 0.115 3.885 17 N -0.468 5.468 18 C 0.172 3.828 19 N -0.354 5.354 20 N -0.336 5.336 21 C 0.181 3.819 22 C 0.127 3.873 23 C 0.123 3.877 24 C -0.132 4.132 25 C -0.102 4.102 26 C -0.119 4.119 27 C -0.104 4.104 28 C -0.138 4.138 29 H 0.267 0.733 30 H 0.017 0.983 31 H 0.004 0.996 32 H 0.124 0.876 33 H 0.136 0.864 34 H 0.045 0.955 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.270 0.730 39 H 0.116 0.884 40 H 0.066 0.934 41 H 0.117 0.883 42 H 0.152 0.848 43 H 0.157 0.843 44 H 0.150 0.850 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.719 -21.076 -4.174 22.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.187 4.187 3 Si 0.786 3.214 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.580 4.580 8 H 0.072 0.928 9 C 0.147 3.853 10 N -0.286 5.286 11 C 0.266 3.734 12 O -0.455 6.455 13 C -0.077 4.077 14 N -0.222 5.222 15 C -0.114 4.114 16 C -0.006 4.006 17 N -0.159 5.159 18 C -0.116 4.116 19 N -0.193 5.193 20 N -0.176 5.176 21 C -0.089 4.089 22 C -0.003 4.003 23 C 0.032 3.968 24 C -0.152 4.152 25 C -0.121 4.121 26 C -0.137 4.137 27 C -0.123 4.123 28 C -0.157 4.157 29 H 0.076 0.924 30 H 0.035 0.965 31 H 0.023 0.977 32 H 0.142 0.858 33 H 0.153 0.847 34 H 0.064 0.936 35 H 0.141 0.859 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.285 0.715 39 H 0.133 0.867 40 H 0.083 0.917 41 H 0.135 0.865 42 H 0.170 0.830 43 H 0.174 0.826 44 H 0.168 0.832 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.516 -20.290 -2.766 21.813 hybrid contribution -1.667 1.572 -0.314 2.313 sum 5.849 -18.718 -3.080 19.851 Atomic orbital electron populations 1.70024 1.07487 1.28241 1.50821 1.25771 0.95725 1.02809 0.94371 0.85560 0.78459 0.78421 0.79008 1.18484 1.20315 1.20333 1.21586 0.93219 0.91698 1.51463 0.92814 1.18774 0.87677 0.83198 0.95696 1.45886 1.44694 1.33241 1.04750 1.22582 0.84122 0.83998 0.82740 1.90619 1.59721 1.63358 1.31783 1.22434 0.97656 0.96497 0.91163 1.62721 1.26996 1.31195 1.01277 1.22816 0.91440 0.99602 0.97510 1.22478 0.95223 0.94228 0.88667 1.46401 1.36003 1.23063 1.10401 1.27129 0.98393 1.01871 0.84188 1.74492 1.18031 1.05520 1.21291 1.73860 1.22910 1.24145 0.96660 1.24715 0.96048 0.89702 0.98453 1.20786 1.02530 0.93718 0.83251 1.17969 0.94050 0.97054 0.87701 1.21413 0.94772 1.00470 0.98543 1.21349 1.01301 0.96684 0.92731 1.21553 0.93021 0.98602 1.00492 1.21311 0.96948 0.99094 0.94903 1.21357 0.99382 0.98717 0.96277 0.92376 0.96472 0.97748 0.85781 0.84675 0.93627 0.85878 0.85257 0.85528 0.71490 0.86654 0.91652 0.86460 0.83014 0.82574 0.83241 0.86967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.69 13.29 21.45 0.28 -55.41 16 2 C 0.01 0.73 5.46 84.66 0.46 1.19 16 3 Si 0.96 44.99 29.54 68.60 2.03 47.02 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 7 C -0.54 -30.71 9.39 25.60 0.24 -30.47 16 8 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 9 C 0.27 14.05 5.15 85.63 0.44 14.49 16 10 N -0.56 -22.57 2.50 -635.30 -1.59 -24.16 16 11 C 0.48 17.79 6.94 87.66 0.61 18.40 16 12 O -0.57 -26.35 11.31 -3.05 -0.03 -26.39 16 13 C 0.05 1.34 4.34 85.56 0.37 1.71 16 14 N -0.50 -12.25 4.86 -902.74 -4.39 -16.64 16 15 C 0.01 0.31 4.86 86.44 0.42 0.73 16 16 C 0.12 1.74 7.28 86.57 0.63 2.37 16 17 N -0.47 -11.14 3.12 -518.96 -1.62 -12.76 16 18 C 0.17 3.89 12.87 180.28 2.32 6.21 16 19 N -0.35 -11.81 12.25 -60.32 -0.74 -12.54 16 20 N -0.34 -12.60 12.20 -50.22 -0.61 -13.21 16 21 C 0.18 5.82 7.87 138.09 1.09 6.90 16 22 C 0.13 3.93 5.61 85.49 0.48 4.41 16 23 C 0.12 3.93 4.37 38.16 0.17 4.10 16 24 C -0.13 -3.55 8.51 22.39 0.19 -3.36 16 25 C -0.10 -1.99 10.04 22.25 0.22 -1.77 16 26 C -0.12 -2.02 10.04 22.29 0.22 -1.80 16 27 C -0.10 -2.09 10.04 22.25 0.22 -1.86 16 28 C -0.14 -3.82 9.72 22.39 0.22 -3.60 16 29 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 30 H 0.02 0.95 7.88 -2.38 -0.02 0.93 16 31 H 0.00 0.27 7.35 -2.39 -0.02 0.25 16 32 H 0.12 2.81 7.01 -2.39 -0.02 2.79 16 33 H 0.14 2.67 7.83 -2.39 -0.02 2.65 16 34 H 0.05 1.43 5.85 -2.39 -0.01 1.41 16 35 H 0.12 2.03 7.99 -2.38 -0.02 2.01 16 36 H 0.13 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.27 2.66 8.06 -2.91 -0.02 2.64 16 39 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 40 H 0.07 2.58 5.66 -2.39 -0.01 2.57 16 41 H 0.12 3.22 7.67 -2.91 -0.02 3.20 16 42 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 43 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 44 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 45 H 0.11 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -83.79 370.95 2.65 -81.14 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 1.01 Total: 15.31 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: 8.30 Total: 17.65 kcal Atomic # 7 Polarization: -126.07 SS G_CDS: -8.66 Total: -134.73 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.03 Total: -26.39 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -83.79 2.65 -81.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105877673.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.332 kcal (2) G-P(sol) polarization free energy of solvation -83.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds