Wall clock time and date at job start Sat Apr 11 2020 06:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00098 * 2 1 4 4 H 1.48502 * 109.46974 * 270.00203 * 3 2 1 5 5 H 1.48498 * 109.47343 * 30.00388 * 3 2 1 6 6 H 1.48496 * 109.47129 * 150.00422 * 3 2 1 7 7 C 1.37875 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99938 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99941 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47303 * 180.02562 * 9 7 2 11 11 C 1.46497 * 120.00485 * 270.00821 * 10 9 7 12 12 C 1.53001 * 109.46828 * 269.99812 * 11 10 9 13 13 C 1.53000 * 117.49734 * 243.62131 * 12 11 10 14 14 C 1.53005 * 117.49967 * 174.99810 * 12 11 10 15 15 C 1.34780 * 119.99803 * 89.99923 * 10 9 7 16 16 O 1.21595 * 119.99972 * 0.02562 * 15 10 9 17 17 N 1.34772 * 120.00254 * 180.02562 * 15 10 9 18 18 C 1.40013 * 120.00376 * 185.31232 * 17 15 10 19 19 C 1.38888 * 120.00499 * 33.31682 * 18 17 15 20 20 C 1.38033 * 119.99565 * 179.97438 * 19 18 17 21 21 C 1.38836 * 120.00297 * 359.97438 * 20 19 18 22 22 N 1.40321 * 119.99569 * 180.02562 * 21 20 19 23 23 C 1.36099 * 125.94540 * 179.97438 * 22 21 20 24 24 C 1.35392 * 106.04929 * 179.97438 * 23 22 21 25 25 N 1.33758 * 106.53665 * 0.02562 * 24 23 22 26 26 N 1.28606 * 109.06058 * 0.02562 * 25 24 23 27 27 C 1.38844 * 120.01437 * 0.29453 * 21 20 19 28 28 C 1.38036 * 119.99853 * 359.44793 * 27 21 20 29 29 H 0.97009 * 119.99691 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.47205 * 60.00857 * 9 7 2 31 31 H 1.08997 * 109.47821 * 300.00795 * 9 7 2 32 32 H 1.09003 * 109.46769 * 29.99237 * 11 10 9 33 33 H 1.08996 * 109.47232 * 149.99584 * 11 10 9 34 34 H 1.09001 * 115.55227 * 29.32540 * 12 11 10 35 35 H 1.08999 * 117.50159 * 359.97438 * 13 12 11 36 36 H 1.09004 * 117.50340 * 145.02399 * 13 12 11 37 37 H 1.08998 * 117.49519 * 214.97702 * 14 12 11 38 38 H 1.08996 * 117.49606 * 359.97438 * 14 12 11 39 39 H 0.97005 * 119.99920 * 5.31033 * 17 15 10 40 40 H 1.08003 * 119.99960 * 359.96471 * 19 18 17 41 41 H 1.07995 * 119.99532 * 180.02562 * 20 19 18 42 42 H 1.07990 * 126.96943 * 359.72074 * 23 22 21 43 43 H 1.07996 * 126.72756 * 179.97438 * 24 23 22 44 44 H 1.08001 * 120.00130 * 179.70675 * 27 21 20 45 45 H 1.08000 * 119.99906 * 180.25314 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.6790 -4.1695 -1.2692 12 6 1.7483 -5.3006 -1.7110 13 6 2.3402 -6.7087 -1.7992 14 6 2.0087 -5.9367 -3.0779 15 6 2.6407 -4.1249 1.1667 16 8 2.2453 -3.6631 2.2197 17 7 3.5168 -5.1491 1.1668 18 6 3.8864 -5.7541 2.3741 19 6 2.9686 -5.8508 3.4121 20 6 3.3330 -6.4479 4.6021 21 6 4.6167 -6.9522 4.7612 22 7 4.9868 -7.5596 5.9708 23 6 6.2059 -8.0927 6.2569 24 6 6.1202 -8.5650 7.5229 25 7 4.8774 -8.3043 7.9431 26 7 4.2320 -7.7103 7.0026 27 6 5.5361 -6.8507 3.7258 28 6 5.1705 -6.2585 2.5337 29 1 -0.4850 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8904 31 1 0.6245 -2.5571 0.8895 32 1 2.6868 -3.3878 -2.0288 33 1 3.6884 -4.5595 -1.1387 34 1 0.7113 -5.2096 -1.3876 35 1 3.3927 -6.8292 -1.5430 36 1 1.6927 -7.5445 -1.5338 37 1 1.1431 -6.2644 -3.6536 38 1 2.8429 -5.5490 -3.6626 39 1 3.8914 -5.4670 0.3304 40 1 1.9700 -5.4587 3.2882 41 1 2.6193 -6.5234 5.4090 42 1 7.0657 -8.1345 5.6048 43 1 6.9018 -9.0565 8.0831 44 1 6.5361 -7.2389 3.8515 45 1 5.8844 -6.1832 1.7269 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176957866.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:52 Heat of formation + Delta-G solvation = 145.167242 kcal Electronic energy + Delta-G solvation = -28675.519274 eV Core-core repulsion = 24697.194605 eV Total energy + Delta-G solvation = -3978.324669 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.55060 -40.57044 -38.99351 -37.42060 -35.56245 -34.52785 -33.53683 -32.49280 -31.81808 -30.81763 -29.11692 -27.82278 -26.23729 -24.31113 -23.95572 -22.87414 -22.44373 -21.94901 -21.30209 -20.89191 -19.41225 -18.84118 -18.15963 -17.24674 -16.60516 -16.54954 -15.62698 -15.49117 -15.20272 -15.01942 -14.85490 -14.61507 -14.28900 -14.11924 -13.92737 -13.65548 -13.29284 -13.18785 -12.89633 -12.48163 -12.22556 -12.05753 -11.71391 -11.58287 -11.51474 -11.29548 -11.24444 -11.15069 -10.95761 -10.69370 -10.46145 -10.20009 -10.02713 -9.97226 -9.69467 -9.65248 -9.49526 -9.17574 -8.49385 -8.11367 -7.75257 -6.10621 -4.15550 0.48663 1.12055 1.82988 2.12080 2.36769 2.94049 3.25950 3.33550 3.36794 3.40931 3.72787 3.80856 4.15857 4.21026 4.36793 4.41306 4.59284 4.74756 4.77142 4.87141 4.91403 4.99900 5.03471 5.04755 5.23120 5.24855 5.31311 5.49100 5.54688 5.62654 5.67755 5.73127 5.84633 5.87259 5.89028 6.04021 6.10838 6.21301 6.29860 6.35393 6.57348 6.65203 6.92572 7.22987 7.36656 7.51907 7.86040 8.14599 8.28531 8.38938 8.83751 9.05469 9.49945 10.97347 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011320 B = 0.002745 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.840110 B =10198.381346 C =11909.610605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.063 3.937 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.260 3.740 10 N -0.600 5.600 11 C 0.142 3.858 12 C -0.167 4.167 13 C -0.185 4.185 14 C -0.174 4.174 15 C 0.699 3.301 16 O -0.563 6.563 17 N -0.693 5.693 18 C 0.204 3.796 19 C -0.105 4.105 20 C -0.072 4.072 21 C 0.078 3.922 22 N -0.228 5.228 23 C -0.054 4.054 24 C -0.049 4.049 25 N -0.271 5.271 26 N -0.080 5.080 27 C -0.090 4.090 28 C -0.141 4.141 29 H 0.264 0.736 30 H 0.037 0.963 31 H 0.046 0.954 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.404 0.596 40 H 0.154 0.846 41 H 0.143 0.857 42 H 0.192 0.808 43 H 0.192 0.808 44 H 0.135 0.865 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.618 -18.371 -0.445 22.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.568 4.568 8 H 0.075 0.925 9 C 0.141 3.859 10 N -0.334 5.334 11 C 0.017 3.983 12 C -0.186 4.186 13 C -0.222 4.222 14 C -0.212 4.212 15 C 0.401 3.599 16 O -0.438 6.438 17 N -0.342 5.342 18 C 0.105 3.895 19 C -0.126 4.126 20 C -0.092 4.092 21 C -0.014 4.014 22 N -0.015 5.015 23 C -0.203 4.203 24 C -0.205 4.205 25 N -0.137 5.137 26 N -0.059 5.059 27 C -0.111 4.111 28 C -0.163 4.163 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.077 0.923 34 H 0.129 0.871 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.241 0.759 40 H 0.171 0.829 41 H 0.161 0.839 42 H 0.209 0.791 43 H 0.209 0.791 44 H 0.152 0.848 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 10.666 -17.568 0.891 20.571 hybrid contribution 1.870 0.658 -1.089 2.262 sum 12.536 -16.910 -0.199 21.051 Atomic orbital electron populations 1.69925 1.05970 1.27127 1.50183 1.24914 0.94874 0.99201 0.94984 0.86502 0.79883 0.83095 0.77976 1.20640 1.21044 1.19926 1.21415 0.93334 0.90649 1.51384 0.92500 1.19291 0.86723 0.81183 0.98701 1.47589 1.47400 1.36239 1.02130 1.20998 0.94289 0.95097 0.87880 1.22973 1.01661 0.93627 1.00370 1.23022 1.01160 0.95380 1.02610 1.22908 1.03469 1.04139 0.90681 1.15928 0.79445 0.79186 0.85388 1.90937 1.60638 1.62377 1.29868 1.43123 1.47780 1.35660 1.07611 1.17726 0.92171 0.92602 0.86971 1.21254 1.01191 0.98305 0.91879 1.20855 0.93976 0.96011 0.98397 1.17573 0.96364 1.04146 0.83316 1.44755 1.09049 1.36540 1.11198 1.23801 0.91422 1.05061 0.99999 1.23619 0.96802 1.05900 0.94223 1.75113 1.05081 1.12668 1.20810 1.78386 1.19388 1.17302 0.90805 1.20517 0.98568 1.00430 0.91625 1.20658 0.94443 1.03191 0.98020 0.92633 0.94550 0.93602 0.88835 0.92281 0.87130 0.89253 0.89033 0.88852 0.88678 0.75893 0.82877 0.83888 0.79117 0.79056 0.84757 0.84462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.53 -14.36 9.39 -34.44 -0.32 -14.68 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.26 6.38 5.16 -5.19 -0.03 6.35 16 10 N -0.60 -11.58 2.46 -180.80 -0.44 -12.02 16 11 C 0.14 2.02 5.50 -4.04 -0.02 2.00 16 12 C -0.17 -2.04 6.01 -90.62 -0.54 -2.59 16 13 C -0.18 -1.75 10.18 -26.73 -0.27 -2.02 16 14 C -0.17 -1.69 10.25 -26.73 -0.27 -1.97 16 15 C 0.70 13.48 8.02 -86.92 -0.70 12.79 16 16 O -0.56 -13.30 13.60 5.28 0.07 -13.22 16 17 N -0.69 -9.73 5.22 -14.20 -0.07 -9.80 16 18 C 0.20 2.70 6.28 -83.64 -0.53 2.18 16 19 C -0.11 -1.53 8.65 -39.42 -0.34 -1.87 16 20 C -0.07 -0.96 9.61 -39.44 -0.38 -1.33 16 21 C 0.08 0.93 6.68 -83.52 -0.56 0.37 16 22 N -0.23 -2.79 3.56 -10.45 -0.04 -2.83 16 23 C -0.05 -0.49 10.92 -16.67 -0.18 -0.67 16 24 C -0.05 -0.48 12.05 -17.73 -0.21 -0.69 16 25 N -0.27 -3.75 12.39 30.24 0.37 -3.38 16 26 N -0.08 -1.17 12.41 60.35 0.75 -0.43 16 27 C -0.09 -0.84 9.45 -39.43 -0.37 -1.22 16 28 C -0.14 -1.41 9.95 -39.42 -0.39 -1.80 16 29 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 31 H 0.05 1.28 7.42 -51.93 -0.39 0.90 16 32 H 0.09 1.41 8.07 -51.93 -0.42 1.00 16 33 H 0.06 0.67 6.02 -51.93 -0.31 0.36 16 34 H 0.11 1.58 8.14 -51.93 -0.42 1.15 16 35 H 0.09 0.71 7.92 -51.93 -0.41 0.30 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.40 4.41 6.39 -40.82 -0.26 4.15 16 40 H 0.15 2.56 6.41 -52.48 -0.34 2.22 16 41 H 0.14 1.88 7.69 -52.49 -0.40 1.48 16 42 H 0.19 0.87 7.10 -52.49 -0.37 0.50 16 43 H 0.19 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.13 0.80 6.76 -52.49 -0.35 0.44 16 45 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 384.00 15.07 5.79 5.79 Total: -1.00 -34.36 384.00 -8.84 -43.20 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -5.76 Total: 4.90 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -5.22 Total: -3.51 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 1.30 Total: -53.52 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.07 Total: -13.22 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.36 -8.84 -43.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176957866.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.365 kcal (2) G-P(sol) polarization free energy of solvation -34.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds