Wall clock time and date at job start Sat Apr 11 2020 06:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00098 * 2 1 4 4 H 1.48502 * 109.46974 * 270.00203 * 3 2 1 5 5 H 1.48498 * 109.47343 * 30.00388 * 3 2 1 6 6 H 1.48496 * 109.47129 * 150.00422 * 3 2 1 7 7 C 1.37875 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99938 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99941 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47303 * 180.02562 * 9 7 2 11 11 C 1.46497 * 120.00485 * 270.00821 * 10 9 7 12 12 C 1.53001 * 109.46828 * 269.99812 * 11 10 9 13 13 C 1.53000 * 117.49734 * 243.62131 * 12 11 10 14 14 C 1.53005 * 117.49967 * 174.99810 * 12 11 10 15 15 C 1.34780 * 119.99803 * 89.99923 * 10 9 7 16 16 O 1.21595 * 119.99972 * 0.02562 * 15 10 9 17 17 N 1.34772 * 120.00254 * 180.02562 * 15 10 9 18 18 C 1.40013 * 120.00376 * 185.31232 * 17 15 10 19 19 C 1.38888 * 120.00499 * 33.31682 * 18 17 15 20 20 C 1.38033 * 119.99565 * 179.97438 * 19 18 17 21 21 C 1.38836 * 120.00297 * 359.97438 * 20 19 18 22 22 N 1.40321 * 119.99569 * 180.02562 * 21 20 19 23 23 C 1.36099 * 125.94540 * 179.97438 * 22 21 20 24 24 C 1.35392 * 106.04929 * 179.97438 * 23 22 21 25 25 N 1.33758 * 106.53665 * 0.02562 * 24 23 22 26 26 N 1.28606 * 109.06058 * 0.02562 * 25 24 23 27 27 C 1.38844 * 120.01437 * 0.29453 * 21 20 19 28 28 C 1.38036 * 119.99853 * 359.44793 * 27 21 20 29 29 H 0.97009 * 119.99691 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.47205 * 60.00857 * 9 7 2 31 31 H 1.08997 * 109.47821 * 300.00795 * 9 7 2 32 32 H 1.09003 * 109.46769 * 29.99237 * 11 10 9 33 33 H 1.08996 * 109.47232 * 149.99584 * 11 10 9 34 34 H 1.09001 * 115.55227 * 29.32540 * 12 11 10 35 35 H 1.08999 * 117.50159 * 359.97438 * 13 12 11 36 36 H 1.09004 * 117.50340 * 145.02399 * 13 12 11 37 37 H 1.08998 * 117.49519 * 214.97702 * 14 12 11 38 38 H 1.08996 * 117.49606 * 359.97438 * 14 12 11 39 39 H 0.97005 * 119.99920 * 5.31033 * 17 15 10 40 40 H 1.08003 * 119.99960 * 359.96471 * 19 18 17 41 41 H 1.07995 * 119.99532 * 180.02562 * 20 19 18 42 42 H 1.07990 * 126.96943 * 359.72074 * 23 22 21 43 43 H 1.07996 * 126.72756 * 179.97438 * 24 23 22 44 44 H 1.08001 * 120.00130 * 179.70675 * 27 21 20 45 45 H 1.08000 * 119.99906 * 180.25314 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.6790 -4.1695 -1.2692 12 6 1.7483 -5.3006 -1.7110 13 6 2.3402 -6.7087 -1.7992 14 6 2.0087 -5.9367 -3.0779 15 6 2.6407 -4.1249 1.1667 16 8 2.2453 -3.6631 2.2197 17 7 3.5168 -5.1491 1.1668 18 6 3.8864 -5.7541 2.3741 19 6 2.9686 -5.8508 3.4121 20 6 3.3330 -6.4479 4.6021 21 6 4.6167 -6.9522 4.7612 22 7 4.9868 -7.5596 5.9708 23 6 6.2059 -8.0927 6.2569 24 6 6.1202 -8.5650 7.5229 25 7 4.8774 -8.3043 7.9431 26 7 4.2320 -7.7103 7.0026 27 6 5.5361 -6.8507 3.7258 28 6 5.1705 -6.2585 2.5337 29 1 -0.4850 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8904 31 1 0.6245 -2.5571 0.8895 32 1 2.6868 -3.3878 -2.0288 33 1 3.6884 -4.5595 -1.1387 34 1 0.7113 -5.2096 -1.3876 35 1 3.3927 -6.8292 -1.5430 36 1 1.6927 -7.5445 -1.5338 37 1 1.1431 -6.2644 -3.6536 38 1 2.8429 -5.5490 -3.6626 39 1 3.8914 -5.4670 0.3304 40 1 1.9700 -5.4587 3.2882 41 1 2.6193 -6.5234 5.4090 42 1 7.0657 -8.1345 5.6048 43 1 6.9018 -9.0565 8.0831 44 1 6.5361 -7.2389 3.8515 45 1 5.8844 -6.1832 1.7269 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176957866.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:48 Heat of formation + Delta-G solvation = 123.517456 kcal Electronic energy + Delta-G solvation = -28676.458080 eV Core-core repulsion = 24697.194605 eV Total energy + Delta-G solvation = -3979.263475 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 3.06 seconds Orbital eigenvalues (eV) -44.39023 -41.83979 -40.09623 -38.45930 -36.75335 -36.03536 -34.86218 -34.22888 -32.67239 -31.67041 -30.38008 -29.33946 -27.64185 -25.62869 -24.85355 -24.40737 -23.20986 -22.87917 -22.28683 -21.93068 -20.71803 -19.69744 -19.42320 -18.60054 -18.46165 -17.47182 -16.92352 -16.72582 -16.33180 -16.15339 -15.93420 -15.85766 -15.47553 -15.05131 -14.94314 -14.82352 -14.50098 -14.36534 -14.10836 -13.90514 -13.70747 -13.22907 -12.98298 -12.91684 -12.61682 -12.54796 -12.51915 -12.29418 -12.22424 -12.17253 -12.00903 -11.76063 -11.33342 -11.22237 -11.02557 -10.74173 -10.63583 -10.43811 -10.13937 -9.58641 -8.97410 -8.21954 -6.36479 -0.42254 0.22274 0.95810 1.30289 1.36349 1.39702 1.49048 1.57647 1.65041 2.10473 2.38378 2.69045 2.77973 3.06900 3.10593 3.42591 3.62884 3.76618 3.83658 3.98880 4.00333 4.07806 4.13556 4.22658 4.24354 4.31279 4.41660 4.58009 4.67492 4.76075 4.77993 4.83346 4.89369 4.93984 5.07088 5.15270 5.17732 5.21676 5.29317 5.32807 5.33360 5.34684 5.54079 5.63525 5.76424 5.93001 6.03523 6.05494 6.72459 6.99688 7.30484 7.43592 7.58243 8.84710 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011320 B = 0.002745 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.840110 B =10198.381346 C =11909.610605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.540 4.540 8 H 0.055 0.945 9 C 0.279 3.721 10 N -0.606 5.606 11 C 0.142 3.858 12 C -0.196 4.196 13 C -0.165 4.165 14 C -0.159 4.159 15 C 0.696 3.304 16 O -0.618 6.618 17 N -0.670 5.670 18 C 0.179 3.821 19 C -0.126 4.126 20 C -0.088 4.088 21 C 0.076 3.924 22 N -0.238 5.238 23 C -0.035 4.035 24 C -0.055 4.055 25 N -0.306 5.306 26 N -0.135 5.135 27 C -0.070 4.070 28 C -0.117 4.117 29 H 0.266 0.734 30 H 0.026 0.974 31 H -0.002 1.002 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.421 0.579 40 H 0.114 0.886 41 H 0.126 0.874 42 H 0.245 0.755 43 H 0.230 0.770 44 H 0.187 0.813 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.989 -20.214 -2.127 27.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.579 4.579 8 H 0.073 0.927 9 C 0.158 3.842 10 N -0.339 5.339 11 C 0.019 3.981 12 C -0.215 4.215 13 C -0.202 4.202 14 C -0.197 4.197 15 C 0.398 3.602 16 O -0.497 6.497 17 N -0.320 5.320 18 C 0.082 3.918 19 C -0.148 4.148 20 C -0.109 4.109 21 C -0.016 4.016 22 N -0.025 5.025 23 C -0.183 4.183 24 C -0.212 4.212 25 N -0.171 5.171 26 N -0.112 5.112 27 C -0.091 4.091 28 C -0.138 4.138 29 H 0.075 0.925 30 H 0.044 0.956 31 H 0.016 0.984 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.134 0.866 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.131 0.869 39 H 0.262 0.738 40 H 0.132 0.868 41 H 0.144 0.856 42 H 0.261 0.739 43 H 0.246 0.754 44 H 0.204 0.796 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 16.064 -19.479 -0.824 25.262 hybrid contribution 0.258 1.088 -0.487 1.220 sum 16.322 -18.391 -1.311 24.625 Atomic orbital electron populations 1.70053 1.07557 1.28103 1.51116 1.25827 0.95743 1.02970 0.94551 0.85440 0.78259 0.78482 0.78780 1.18687 1.20981 1.19789 1.21701 0.93301 0.91836 1.51011 0.92706 1.18654 0.87128 0.82670 0.95787 1.47373 1.46781 1.35395 1.04320 1.21230 0.96426 0.95331 0.85077 1.22688 0.99898 0.95233 1.03720 1.23159 1.02428 0.93132 1.01445 1.23022 1.04112 1.02595 0.89944 1.16090 0.79829 0.79964 0.84353 1.90904 1.62632 1.64380 1.31834 1.42644 1.46374 1.34048 1.08980 1.17962 0.93645 0.94056 0.86147 1.20973 1.00388 0.99902 0.93527 1.20697 0.95302 0.97290 0.97621 1.17786 0.96085 1.03587 0.84131 1.44899 1.10107 1.36784 1.10727 1.24713 0.91157 1.02230 1.00246 1.24392 0.96130 1.05579 0.95068 1.75058 1.07236 1.13324 1.21492 1.78397 1.20991 1.19773 0.92069 1.21056 0.99872 0.98414 0.89779 1.21085 0.92956 1.00507 0.99283 0.92469 0.95571 0.98416 0.90004 0.88504 0.90399 0.86557 0.88817 0.88492 0.86888 0.73763 0.86768 0.85592 0.73856 0.75375 0.79574 0.80057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.84 13.29 21.45 0.28 -55.56 16 2 C 0.01 0.46 5.46 84.65 0.46 0.92 16 3 Si 0.97 44.48 29.54 68.60 2.03 46.51 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.54 -30.43 9.39 25.60 0.24 -30.19 16 8 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 9 C 0.28 14.71 5.16 85.63 0.44 15.15 16 10 N -0.61 -24.48 2.46 -844.18 -2.07 -26.55 16 11 C 0.14 3.99 5.50 86.38 0.48 4.46 16 12 C -0.20 -4.75 6.01 -10.79 -0.06 -4.81 16 13 C -0.16 -2.67 10.18 30.60 0.31 -2.36 16 14 C -0.16 -2.73 10.25 30.60 0.31 -2.41 16 15 C 0.70 28.09 8.02 179.05 1.44 29.52 16 16 O -0.62 -31.64 13.60 -4.02 -0.05 -31.69 16 17 N -0.67 -18.23 5.22 -317.09 -1.66 -19.89 16 18 C 0.18 4.56 6.28 38.14 0.24 4.80 16 19 C -0.13 -3.96 8.65 22.38 0.19 -3.76 16 20 C -0.09 -2.50 9.61 22.36 0.21 -2.29 16 21 C 0.08 1.67 6.68 38.07 0.25 1.93 16 22 N -0.24 -5.39 3.56 -186.96 -0.67 -6.06 16 23 C -0.04 -0.48 10.92 83.37 0.91 0.43 16 24 C -0.05 -0.90 12.05 83.74 1.01 0.10 16 25 N -0.31 -8.36 12.39 -58.24 -0.72 -9.09 16 26 N -0.13 -4.01 12.41 37.02 0.46 -3.55 16 27 C -0.07 -0.96 9.45 22.37 0.21 -0.75 16 28 C -0.12 -1.79 9.95 22.38 0.22 -1.56 16 29 H 0.27 15.07 8.31 -92.70 -0.77 14.30 16 30 H 0.03 1.41 8.07 -2.38 -0.02 1.39 16 31 H 0.00 -0.14 7.42 -2.39 -0.02 -0.16 16 32 H 0.08 2.47 8.07 -2.39 -0.02 2.45 16 33 H 0.10 1.92 6.02 -2.39 -0.01 1.91 16 34 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.12 1.27 7.92 -2.39 -0.02 1.25 16 36 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.42 7.93 6.39 -92.70 -0.59 7.34 16 40 H 0.11 4.41 6.41 -2.91 -0.02 4.39 16 41 H 0.13 3.83 7.69 -2.91 -0.02 3.81 16 42 H 0.25 0.36 7.10 -2.92 -0.02 0.34 16 43 H 0.23 1.65 8.06 -2.91 -0.02 1.63 16 44 H 0.19 0.64 6.76 -2.91 -0.02 0.62 16 45 H 0.18 1.25 8.06 -2.91 -0.02 1.22 16 Total: -1.00 -85.59 384.00 4.91 -80.68 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.44 Total: 16.01 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 6.87 Total: 9.19 kcal Atomic # 7 Polarization: -116.32 SS G_CDS: -4.37 Total: -120.69 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -0.05 Total: -31.69 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -85.59 4.91 -80.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176957866.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.195 kcal (2) G-P(sol) polarization free energy of solvation -85.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.06 seconds