Wall clock time and date at job start Sat Apr 11 2020 06:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00168 * 2 1 4 4 H 1.48496 * 109.47533 * 270.00366 * 3 2 1 5 5 H 1.48500 * 109.47285 * 30.00531 * 3 2 1 6 6 H 1.48505 * 109.47081 * 150.00115 * 3 2 1 7 7 C 1.37876 * 119.99452 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00487 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99802 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47332 * 179.97438 * 9 7 2 11 11 C 1.46504 * 119.99926 * 269.99774 * 10 9 7 12 12 C 1.53003 * 109.46896 * 269.99752 * 11 10 9 13 13 C 1.52995 * 117.49785 * 243.62013 * 12 11 10 14 14 C 1.52998 * 60.00246 * 252.51396 * 13 12 11 15 15 C 1.34776 * 120.00006 * 89.99405 * 10 9 7 16 16 O 1.21587 * 120.00220 * 0.02562 * 15 10 9 17 17 N 1.34779 * 120.00045 * 179.97438 * 15 10 9 18 18 C 1.40210 * 120.00131 * 180.02562 * 17 15 10 19 19 C 1.39953 * 126.71558 * 0.02562 * 18 17 15 20 20 N 1.30944 * 108.23719 * 180.02562 * 19 18 17 21 21 N 1.28703 * 109.71717 * 0.02562 * 20 19 18 22 22 C 1.40155 * 125.66847 * 179.97438 * 21 20 19 23 23 C 1.38849 * 120.06953 * 179.75383 * 22 21 20 24 24 C 1.38119 * 119.93451 * 179.71898 * 23 22 21 25 25 C 1.38282 * 120.06415 * 0.52817 * 24 23 22 26 26 C 1.38291 * 120.13651 * 359.76811 * 25 24 23 27 27 C 1.38110 * 120.06832 * 359.95526 * 26 25 24 28 28 N 1.31877 * 126.71707 * 180.02562 * 18 17 15 29 29 H 0.97002 * 119.99607 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.47436 * 59.99377 * 9 7 2 31 31 H 1.09005 * 109.47036 * 299.99454 * 9 7 2 32 32 H 1.08997 * 109.46857 * 29.99861 * 11 10 9 33 33 H 1.08997 * 109.47072 * 149.99668 * 11 10 9 34 34 H 1.08998 * 115.55231 * 29.33237 * 12 11 10 35 35 H 1.09000 * 117.49816 * 0.02562 * 13 12 11 36 36 H 1.09000 * 117.49642 * 145.02395 * 13 12 11 37 37 H 1.08997 * 117.50124 * 252.51249 * 14 13 12 38 38 H 1.09006 * 117.49832 * 107.48729 * 14 13 12 39 39 H 0.97005 * 119.99659 * 0.02562 * 17 15 10 40 40 H 1.08002 * 125.88661 * 0.02562 * 19 18 17 41 41 H 1.08005 * 120.03425 * 359.96553 * 23 22 21 42 42 H 1.08001 * 119.96831 * 180.26741 * 24 23 22 43 43 H 1.08003 * 119.93355 * 179.74369 * 25 24 23 44 44 H 1.07997 * 119.96151 * 179.97438 * 26 25 24 45 45 H 1.07993 * 120.03597 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5754 -0.0001 11 6 4.2434 -3.2663 1.2686 12 6 5.6883 -3.0260 1.7108 13 6 6.6116 -4.2428 1.7992 14 6 6.1084 -3.5699 3.0778 15 6 4.2247 -3.2106 -1.1673 16 8 4.0228 -2.6371 -2.2203 17 7 4.6744 -4.4811 -1.1674 18 6 4.9089 -5.1417 -2.3817 19 6 4.7255 -4.6197 -3.6672 20 7 5.0523 -5.5439 -4.5353 21 7 5.4271 -6.6081 -3.9161 22 6 5.8477 -7.8004 -4.5212 23 6 6.2332 -8.8798 -3.7376 24 6 6.6417 -10.0554 -4.3367 25 6 6.6773 -10.1542 -5.7156 26 6 6.2998 -9.0787 -6.4987 27 6 5.8850 -7.9025 -5.9055 28 7 5.3456 -6.3764 -2.5361 29 1 -0.4850 0.8401 0.0004 30 1 3.8745 -0.6809 0.8904 31 1 3.8751 -0.6798 -0.8895 32 1 3.5624 -2.8823 2.0281 33 1 4.0764 -4.3355 1.1380 34 1 6.1281 -2.0825 1.3877 35 1 6.1898 -5.2144 1.5420 36 1 7.6592 -4.0999 1.5341 37 1 6.8249 -2.9843 3.6539 38 1 5.3554 -4.0988 3.6621 39 1 4.8358 -4.9385 -0.3274 40 1 4.3747 -3.6257 -3.9028 41 1 6.2099 -8.8017 -2.6606 42 1 6.9375 -10.8968 -3.7277 43 1 7.0010 -11.0730 -6.1818 44 1 6.3291 -9.1589 -7.5753 45 1 5.5899 -7.0632 -6.5175 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273351794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:05 Heat of formation + Delta-G solvation = 160.038720 kcal Electronic energy + Delta-G solvation = -28665.197273 eV Core-core repulsion = 24687.517479 eV Total energy + Delta-G solvation = -3977.679794 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.52746 -40.08907 -39.27697 -37.51543 -35.40936 -34.61158 -33.17446 -32.48756 -31.83364 -31.04516 -29.15359 -28.39636 -26.51038 -24.10447 -23.69516 -22.69569 -22.45140 -21.53043 -21.20167 -20.88793 -19.47731 -18.21681 -17.85103 -17.01845 -16.90879 -16.39198 -16.25813 -15.44820 -15.17902 -15.06747 -14.99008 -14.59834 -14.18920 -14.11287 -13.98667 -13.74734 -13.52799 -13.12065 -12.67325 -12.36301 -12.08336 -11.95680 -11.63554 -11.57740 -11.55812 -11.51595 -11.44220 -10.99920 -10.79389 -10.63953 -10.45431 -10.20168 -10.18685 -10.08725 -9.65533 -9.51551 -9.32995 -9.30413 -8.62888 -8.15550 -7.82493 -6.12503 -4.12276 0.54794 1.02649 1.77722 1.86622 2.54664 2.81476 3.27010 3.32498 3.35212 3.49819 3.64178 3.68485 4.05227 4.19182 4.35765 4.58977 4.69128 4.74596 4.80516 4.85237 4.90808 5.03924 5.04557 5.19819 5.21395 5.28303 5.28956 5.55737 5.61214 5.64081 5.70029 5.82525 5.86096 5.96708 6.03802 6.06254 6.08674 6.17327 6.24793 6.39009 6.45656 6.65854 6.76499 6.92574 7.09363 7.25169 7.53925 8.01733 8.23556 8.40956 8.85046 8.92064 9.46556 11.00702 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014008 B = 0.002663 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.430786 B =10511.967537 C =12016.484058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.875 3.125 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.532 4.532 8 H 0.075 0.925 9 C 0.231 3.769 10 N -0.590 5.590 11 C 0.139 3.861 12 C -0.172 4.172 13 C -0.185 4.185 14 C -0.172 4.172 15 C 0.712 3.288 16 O -0.560 6.560 17 N -0.643 5.643 18 C 0.313 3.687 19 C -0.014 4.014 20 N -0.238 5.238 21 N -0.187 5.187 22 C 0.181 3.819 23 C -0.119 4.119 24 C -0.099 4.099 25 C -0.130 4.130 26 C -0.097 4.097 27 C -0.121 4.121 28 N -0.320 5.320 29 H 0.265 0.735 30 H 0.036 0.964 31 H 0.041 0.959 32 H 0.099 0.901 33 H 0.064 0.936 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.412 0.588 40 H 0.224 0.776 41 H 0.139 0.861 42 H 0.132 0.868 43 H 0.128 0.872 44 H 0.133 0.867 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.794 -17.535 -3.021 23.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.571 4.571 8 H 0.094 0.906 9 C 0.111 3.889 10 N -0.323 5.323 11 C 0.014 3.986 12 C -0.191 4.191 13 C -0.222 4.222 14 C -0.209 4.209 15 C 0.413 3.587 16 O -0.434 6.434 17 N -0.297 5.297 18 C 0.051 3.949 19 C -0.204 4.204 20 N -0.073 5.073 21 N -0.077 5.077 22 C 0.089 3.911 23 C -0.140 4.140 24 C -0.117 4.117 25 C -0.149 4.149 26 C -0.116 4.116 27 C -0.143 4.143 28 N -0.159 5.159 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.117 0.883 33 H 0.083 0.917 34 H 0.129 0.871 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.250 0.750 40 H 0.240 0.760 41 H 0.157 0.843 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.151 0.849 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 15.822 -17.984 -4.229 24.324 hybrid contribution 0.061 1.476 1.043 1.809 sum 15.883 -16.508 -3.186 23.129 Atomic orbital electron populations 1.69894 1.06216 1.27061 1.50137 1.24833 0.94751 0.98911 0.94371 0.86871 0.80148 0.83826 0.78943 1.19816 1.21084 1.19012 1.21307 0.89061 0.94926 1.51796 0.90641 1.19708 0.95684 0.75683 0.97871 1.47149 1.66732 1.16208 1.02243 1.21097 0.93773 0.96212 0.87473 1.22976 0.96538 0.98814 1.00792 1.23053 0.99858 0.96743 1.02572 1.22912 1.03567 1.03882 0.90573 1.15644 0.78254 0.79350 0.85430 1.90811 1.57608 1.65297 1.29706 1.42057 1.68853 1.13647 1.05172 1.19822 0.96191 0.90264 0.88669 1.25340 1.06465 1.01947 0.86665 1.73447 1.12002 0.94196 1.27645 1.47528 1.50185 1.09434 1.00531 1.17328 0.99979 0.82115 0.91683 1.20914 1.00576 0.91717 1.00834 1.21025 0.98861 0.96891 0.94946 1.21252 1.00735 0.99075 0.93861 1.21020 0.98154 0.92122 1.00300 1.20945 1.01692 0.99738 0.91898 1.78076 1.28328 1.14643 0.94879 0.92486 0.94606 0.94091 0.88261 0.91730 0.87132 0.89016 0.88972 0.88801 0.88493 0.75026 0.75990 0.84339 0.84997 0.85451 0.84923 0.84220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.90 13.96 55.43 0.77 -26.13 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 20.76 27.47 -169.99 -4.67 16.09 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -5.86 6.54 56.52 0.37 -5.49 16 7 C -0.53 -14.56 9.94 -34.44 -0.34 -14.90 16 8 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 9 C 0.23 5.25 4.23 -5.19 -0.02 5.23 16 10 N -0.59 -11.23 2.46 -180.80 -0.44 -11.68 16 11 C 0.14 2.00 5.45 -4.04 -0.02 1.98 16 12 C -0.17 -2.09 6.01 -90.62 -0.54 -2.63 16 13 C -0.19 -1.85 10.00 -26.73 -0.27 -2.12 16 14 C -0.17 -1.68 10.25 -26.73 -0.27 -1.95 16 15 C 0.71 13.92 8.25 -86.92 -0.72 13.20 16 16 O -0.56 -12.72 13.13 5.29 0.07 -12.65 16 17 N -0.64 -10.35 5.32 -15.47 -0.08 -10.43 16 18 C 0.31 5.30 8.19 -153.96 -1.26 4.04 16 19 C -0.01 -0.25 10.85 -17.29 -0.19 -0.44 16 20 N -0.24 -3.95 11.24 30.66 0.34 -3.60 16 21 N -0.19 -2.93 4.44 32.48 0.14 -2.79 16 22 C 0.18 2.34 6.74 -83.60 -0.56 1.78 16 23 C -0.12 -1.28 9.65 -39.40 -0.38 -1.66 16 24 C -0.10 -0.79 10.04 -39.61 -0.40 -1.19 16 25 C -0.13 -0.95 10.04 -39.55 -0.40 -1.34 16 26 C -0.10 -0.79 10.04 -39.61 -0.40 -1.19 16 27 C -0.12 -1.32 9.61 -39.40 -0.38 -1.70 16 28 N -0.32 -5.14 11.97 31.46 0.38 -4.76 16 29 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.04 0.77 7.13 -51.93 -0.37 0.40 16 31 H 0.04 0.99 6.85 -51.93 -0.36 0.64 16 32 H 0.10 1.49 8.07 -51.93 -0.42 1.07 16 33 H 0.06 0.80 6.10 -51.93 -0.32 0.48 16 34 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.09 0.84 7.76 -51.93 -0.40 0.44 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.41 5.50 6.10 -40.82 -0.25 5.25 16 40 H 0.22 4.08 5.98 -52.49 -0.31 3.76 16 41 H 0.14 1.48 7.68 -52.48 -0.40 1.08 16 42 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 43 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 44 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 45 H 0.14 1.52 7.68 -52.49 -0.40 1.12 16 LS Contribution 381.95 15.07 5.76 5.76 Total: -1.00 -32.87 381.95 -9.76 -42.63 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -5.78 Total: 8.47 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -6.25 Total: -0.91 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: 1.11 Total: -59.39 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.07 Total: -12.65 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.67 Total: 16.09 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.87 -9.76 -42.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273351794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.672 kcal (2) G-P(sol) polarization free energy of solvation -32.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds