Wall clock time and date at job start Sat Apr 11 2020 06:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00074 * 2 1 4 4 H 1.48497 * 109.47212 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47119 * 300.00611 * 3 2 1 6 6 H 1.48504 * 109.46819 * 60.00151 * 3 2 1 7 7 C 1.37880 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99616 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00102 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47326 * 180.02562 * 9 7 2 11 11 C 1.34964 * 125.97659 * 124.99643 * 10 9 7 12 12 C 1.35237 * 107.86287 * 179.73677 * 11 10 9 13 13 C 1.40416 * 107.86796 * 0.26441 * 12 11 10 14 14 N 1.40095 * 125.97894 * 179.97438 * 13 12 11 15 15 C 1.34778 * 119.99691 * 359.97438 * 14 13 12 16 16 O 1.21606 * 119.99999 * 0.02562 * 15 14 13 17 17 C 1.47517 * 120.00108 * 179.97438 * 15 14 13 18 18 C 1.40352 * 120.47634 * 180.02562 * 17 15 14 19 19 C 1.36858 * 118.49070 * 179.97438 * 18 17 15 20 20 C 1.39396 * 119.38353 * 359.97438 * 19 18 17 21 21 N 1.38458 * 119.54290 * 179.97438 * 20 19 18 22 22 C 1.46504 * 119.99715 * 0.02562 * 21 20 19 23 23 C 1.52998 * 109.46948 * 179.97438 * 22 21 20 24 24 C 1.52995 * 117.49986 * 243.74110 * 23 22 21 25 25 C 1.53005 * 117.49910 * 175.08085 * 23 22 21 26 26 N 1.32604 * 120.92044 * 0.02562 * 20 19 18 27 27 C 1.31674 * 121.64081 * 359.72873 * 26 20 19 28 28 N 1.31233 * 108.05009 * 359.97438 * 13 12 11 29 29 H 0.97001 * 120.00040 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47687 * 59.99869 * 9 7 2 31 31 H 1.09002 * 109.47016 * 300.00065 * 9 7 2 32 32 H 1.08002 * 126.07135 * 0.02562 * 11 10 9 33 33 H 1.08003 * 126.06674 * 180.26559 * 12 11 10 34 34 H 0.96998 * 120.00258 * 180.02562 * 14 13 12 35 35 H 1.08000 * 120.75964 * 0.02562 * 18 17 15 36 36 H 1.07999 * 120.31048 * 179.97438 * 19 18 17 37 37 H 0.96995 * 120.00620 * 179.97438 * 21 20 19 38 38 H 1.09002 * 109.46637 * 299.98974 * 22 21 20 39 39 H 1.08994 * 109.47594 * 59.99703 * 22 21 20 40 40 H 1.09005 * 115.55407 * 29.41514 * 23 22 21 41 41 H 1.08997 * 117.50079 * 0.02562 * 24 23 22 42 42 H 1.09002 * 117.50217 * 145.02149 * 24 23 22 43 43 H 1.08994 * 117.50039 * 214.97568 * 25 23 22 44 44 H 1.09001 * 117.49554 * 0.02562 * 25 23 22 45 45 H 1.07997 * 119.74654 * 180.26803 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.2421 -4.6224 0.8942 12 6 3.2570 -5.4458 0.5464 13 6 3.8667 -4.9167 -0.6025 14 7 4.9595 -5.4692 -1.2830 15 6 5.5202 -6.6125 -0.8413 16 8 5.0772 -7.1647 0.1474 17 6 6.6706 -7.1948 -1.5581 18 6 7.2618 -8.3852 -1.1073 19 6 8.3267 -8.8897 -1.8034 20 6 8.7894 -8.2129 -2.9308 21 7 9.8668 -8.7200 -3.6372 22 6 10.5120 -9.9601 -3.1985 23 6 11.6655 -10.2973 -4.1453 24 6 11.5573 -11.5884 -4.9590 25 6 12.5422 -11.5000 -3.7905 26 7 8.2126 -7.0896 -3.3356 27 6 7.1831 -6.5728 -2.6977 28 7 3.2338 -3.8139 -0.9275 29 1 -0.4850 0.8400 -0.0004 30 1 0.6240 -2.5568 -0.8903 31 1 0.6248 -2.5571 0.8897 32 1 1.5777 -4.7525 1.7356 33 1 3.5470 -6.3500 1.0609 34 1 5.3132 -5.0287 -2.0714 35 1 6.8845 -8.8921 -0.2314 36 1 8.8042 -9.8036 -1.4822 37 1 10.1940 -8.2548 -4.4228 38 1 10.8975 -9.8309 -2.1872 39 1 9.7845 -10.7717 -3.2093 40 1 12.1504 -9.4433 -4.6185 41 1 10.6641 -12.1974 -4.8201 42 1 11.9712 -11.5840 -5.9674 43 1 13.6035 -11.4376 -4.0307 44 1 12.2967 -12.0513 -2.8828 45 1 6.7341 -5.6586 -3.0568 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282090898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:08 Heat of formation + Delta-G solvation = 97.720916 kcal Electronic energy + Delta-G solvation = -27056.768078 eV Core-core repulsion = 23076.385982 eV Total energy + Delta-G solvation = -3980.382096 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.27501 -41.52890 -40.18270 -38.72549 -36.27934 -36.14780 -35.26903 -33.58888 -32.92004 -31.24892 -30.86250 -28.64667 -27.77314 -25.34854 -24.71565 -24.31262 -23.22700 -22.70425 -21.84236 -21.71235 -20.93215 -19.07130 -18.69634 -18.43697 -18.10240 -17.77057 -16.99674 -16.59872 -16.52152 -16.21463 -15.94043 -15.80597 -15.48277 -15.32738 -15.04668 -14.59330 -14.53538 -14.31069 -14.17726 -14.06645 -13.79801 -13.68648 -13.54126 -12.92283 -12.72204 -12.38948 -12.35137 -12.30044 -12.06780 -11.63643 -11.59879 -11.38075 -11.32223 -11.11980 -11.01251 -10.74455 -10.71422 -10.49097 -9.74912 -9.15404 -8.79638 -8.32245 -6.46186 -0.23909 0.31063 1.08638 1.36969 1.37843 1.39784 1.53036 1.63206 1.97998 2.27008 2.31058 2.43917 2.87765 2.92981 2.99542 3.43455 3.64131 3.68894 3.86943 3.90782 3.98265 4.01841 4.11583 4.12894 4.28318 4.30909 4.57018 4.63015 4.72628 4.77705 4.83074 4.90500 4.92326 4.94664 5.02581 5.05373 5.11657 5.19310 5.24488 5.27297 5.37960 5.58091 5.81099 5.90988 5.93396 6.24572 6.31655 6.42550 6.66285 6.97646 7.03687 7.10857 7.23887 8.75523 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023776 B = 0.001657 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.375989 B =16892.816698 C =17757.467814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.019 3.981 3 Si 0.972 3.028 4 H -0.275 1.275 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.548 4.548 8 H 0.052 0.948 9 C 0.272 3.728 10 N -0.343 5.343 11 C 0.057 3.943 12 C -0.293 4.293 13 C 0.266 3.734 14 N -0.623 5.623 15 C 0.580 3.420 16 O -0.549 6.549 17 C -0.262 4.262 18 C 0.026 3.974 19 C -0.240 4.240 20 C 0.419 3.581 21 N -0.704 5.704 22 C 0.153 3.847 23 C -0.175 4.175 24 C -0.181 4.181 25 C -0.165 4.165 26 N -0.565 5.565 27 C 0.196 3.804 28 N -0.345 5.345 29 H 0.272 0.728 30 H 0.022 0.978 31 H 0.060 0.940 32 H 0.202 0.798 33 H 0.169 0.831 34 H 0.421 0.579 35 H 0.151 0.849 36 H 0.165 0.835 37 H 0.410 0.590 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.112 0.888 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.222 -24.376 -7.210 35.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.181 4.181 3 Si 0.796 3.204 4 H -0.200 1.200 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.586 4.586 8 H 0.070 0.930 9 C 0.153 3.847 10 N -0.125 5.125 11 C -0.091 4.091 12 C -0.324 4.324 13 C 0.011 3.989 14 N -0.272 5.272 15 C 0.370 3.630 16 O -0.426 6.426 17 C -0.271 4.271 18 C 0.000 4.000 19 C -0.264 4.264 20 C 0.181 3.819 21 N -0.334 5.334 22 C 0.029 3.971 23 C -0.194 4.194 24 C -0.218 4.218 25 C -0.202 4.202 26 N -0.283 5.283 27 C 0.036 3.964 28 N -0.176 5.176 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.219 0.781 33 H 0.186 0.814 34 H 0.259 0.741 35 H 0.169 0.831 36 H 0.183 0.817 37 H 0.247 0.753 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.130 0.870 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 24.066 -23.411 -8.010 34.517 hybrid contribution -0.085 0.543 0.472 0.724 sum 23.981 -22.868 -7.538 33.983 Atomic orbital electron populations 1.70001 1.07188 1.28685 1.50043 1.25726 0.95829 1.02677 0.93883 0.85297 0.78383 0.78411 0.78295 1.19978 1.19850 1.19495 1.21441 0.93407 0.91005 1.52714 0.92960 1.19352 0.85668 0.81494 0.98170 1.48844 1.23695 1.20354 1.19635 1.23177 1.00469 0.88806 0.96692 1.21732 1.02290 1.06574 1.01803 1.19405 0.91607 0.93224 0.94618 1.42435 1.29107 1.25002 1.30689 1.18321 0.82461 0.78696 0.83537 1.90673 1.63614 1.61275 1.27067 1.20222 1.02082 1.02296 1.02536 1.21278 0.90904 0.90948 0.96886 1.21317 1.01798 1.05075 0.98236 1.18834 0.86657 0.88125 0.88314 1.44624 1.30823 1.26772 1.31171 1.21182 0.93210 0.84775 0.97885 1.22368 1.00103 0.93837 1.03046 1.23177 1.02206 0.99434 0.96957 1.23065 0.97431 0.99634 1.00113 1.67288 1.13207 1.13296 1.34533 1.22866 0.88553 0.96826 0.88198 1.77260 1.04769 1.17978 1.17635 0.91849 0.96001 0.92269 0.78075 0.81379 0.74071 0.83094 0.81730 0.75300 0.90184 0.90509 0.86984 0.88268 0.88394 0.87885 0.87588 0.80937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.45 13.29 21.45 0.28 -52.16 16 2 C 0.02 1.07 5.46 84.65 0.46 1.53 16 3 Si 0.97 44.04 29.54 68.60 2.03 46.06 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.55 -31.25 9.23 25.60 0.24 -31.01 16 8 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 9 C 0.27 14.27 6.26 85.63 0.54 14.81 16 10 N -0.34 -16.40 3.67 -351.85 -1.29 -17.69 16 11 C 0.06 2.29 11.43 83.52 0.96 3.24 16 12 C -0.29 -11.71 9.60 22.11 0.21 -11.50 16 13 C 0.27 10.93 8.11 133.34 1.08 12.01 16 14 N -0.62 -19.92 5.40 -310.39 -1.68 -21.60 16 15 C 0.58 17.44 7.74 86.69 0.67 18.11 16 16 O -0.55 -19.39 13.53 -4.05 -0.05 -19.45 16 17 C -0.26 -6.06 5.89 -19.99 -0.12 -6.18 16 18 C 0.03 0.49 9.65 22.46 0.22 0.71 16 19 C -0.24 -3.56 9.25 22.23 0.21 -3.36 16 20 C 0.42 6.98 7.64 133.25 1.02 8.00 16 21 N -0.70 -7.78 5.71 -345.16 -1.97 -9.75 16 22 C 0.15 0.94 5.16 86.38 0.45 1.39 16 23 C -0.18 -0.88 5.84 -10.79 -0.06 -0.95 16 24 C -0.18 -0.88 10.18 30.62 0.31 -0.57 16 25 C -0.17 -0.63 10.26 30.62 0.31 -0.32 16 26 N -0.57 -11.55 10.38 -192.32 -2.00 -13.55 16 27 C 0.20 4.05 10.71 85.04 0.91 4.96 16 28 N -0.35 -16.41 12.42 -54.48 -0.68 -17.09 16 29 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 30 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 3.02 8.07 -2.39 -0.02 3.00 16 32 H 0.20 6.34 8.06 -2.91 -0.02 6.32 16 33 H 0.17 6.45 5.91 -2.91 -0.02 6.43 16 34 H 0.42 10.98 6.87 -92.71 -0.64 10.34 16 35 H 0.15 2.73 7.73 -2.91 -0.02 2.71 16 36 H 0.17 1.42 6.66 -2.91 -0.02 1.40 16 37 H 0.41 4.21 8.52 -92.71 -0.79 3.42 16 38 H 0.08 0.41 7.91 -2.39 -0.02 0.39 16 39 H 0.08 0.40 7.64 -2.39 -0.02 0.38 16 40 H 0.11 0.57 8.04 -2.38 -0.02 0.56 16 41 H 0.10 0.46 8.03 -2.39 -0.02 0.45 16 42 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 45 H 0.17 2.90 6.41 -2.91 -0.02 2.88 16 Total: -1.00 -72.77 386.20 1.67 -71.10 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: -0.37 Total: 23.24 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 7.39 Total: 10.88 kcal Atomic # 7 Polarization: -124.50 SS G_CDS: -7.32 Total: -131.83 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.05 Total: -19.45 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -72.77 1.67 -71.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282090898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.822 kcal (2) G-P(sol) polarization free energy of solvation -72.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds