Wall clock time and date at job start Sat Apr 11 2020 06:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 119.99944 * 2 1 4 4 H 1.48506 * 109.47205 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47212 * 299.99844 * 3 2 1 6 6 H 1.48496 * 109.47293 * 60.00083 * 3 2 1 7 7 C 1.37876 * 120.00359 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00542 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99724 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47017 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.46993 * 179.97438 * 10 9 7 12 12 C 1.34780 * 119.99883 * 180.02562 * 11 10 9 13 13 O 1.21587 * 119.99997 * 359.97438 * 12 11 10 14 14 N 1.34770 * 119.99975 * 180.02562 * 12 11 10 15 15 C 1.39970 * 120.00117 * 185.31301 * 14 12 11 16 16 C 1.38981 * 120.00000 * 213.31384 * 15 14 12 17 17 C 1.38206 * 120.20753 * 180.02562 * 16 15 14 18 18 C 1.38039 * 120.21778 * 359.74776 * 17 16 15 19 19 C 1.39532 * 119.99617 * 0.50894 * 18 17 16 20 20 C 1.47948 * 120.10630 * 179.76327 * 19 18 17 21 21 N 1.31438 * 126.54127 * 194.70004 * 20 19 18 22 22 N 1.28520 * 109.71092 * 179.97438 * 21 20 19 23 23 C 1.30779 * 110.03442 * 359.90930 * 22 21 20 24 24 N 1.35774 * 107.41973 * 0.18612 * 23 22 21 25 25 C 1.46745 * 111.09159 * 179.71715 * 24 23 22 26 26 C 1.54765 * 105.60385 * 17.08550 * 25 24 23 27 27 C 1.51354 * 142.76500 * 180.18478 * 23 22 21 28 28 C 1.38594 * 119.99638 * 33.34191 * 15 14 12 29 29 H 0.96998 * 120.00449 * 359.97438 * 1 2 3 30 30 H 1.08992 * 109.47339 * 59.99725 * 9 7 2 31 31 H 1.08995 * 109.47053 * 299.99792 * 9 7 2 32 32 H 1.09002 * 109.47457 * 59.99629 * 10 9 7 33 33 H 1.09004 * 109.46945 * 299.99918 * 10 9 7 34 34 H 0.96995 * 120.00221 * 359.97438 * 11 10 9 35 35 H 0.97006 * 120.00278 * 5.30720 * 14 12 11 36 36 H 1.07998 * 119.89661 * 0.05322 * 16 15 14 37 37 H 1.07998 * 119.88889 * 180.02562 * 17 16 15 38 38 H 1.07998 * 120.00654 * 180.27463 * 18 17 16 39 39 H 1.09003 * 110.22340 * 136.09120 * 25 24 23 40 40 H 1.09000 * 110.22502 * 258.03433 * 25 24 23 41 41 H 1.09000 * 111.04919 * 216.16403 * 26 25 24 42 42 H 1.09004 * 110.98222 * 92.36806 * 26 25 24 43 43 H 1.08998 * 110.46389 * 282.20901 * 27 23 22 44 44 H 1.08995 * 110.46144 * 44.66369 * 27 23 22 45 45 H 1.07998 * 120.11465 * 359.95469 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 7 1.5128 -4.9308 0.0024 12 6 2.1868 -6.0980 0.0041 13 8 3.4026 -6.0979 0.0046 14 7 1.5130 -7.2651 0.0042 15 6 2.2082 -8.4746 0.1181 16 6 1.7380 -9.6102 -0.5307 17 6 2.4207 -10.8068 -0.4206 18 6 3.5768 -10.8805 0.3301 19 6 4.0538 -9.7472 0.9895 20 6 5.2898 -9.8247 1.7990 21 7 5.7071 -8.9400 2.6769 22 7 6.8178 -9.3310 3.1919 23 6 7.1701 -10.4806 2.6775 24 7 6.2172 -10.8317 1.7762 25 6 6.5380 -12.1153 1.1416 26 6 7.6008 -12.7759 2.0522 27 6 8.2457 -11.5442 2.7276 28 6 3.3651 -8.5398 0.8785 29 1 -0.4851 0.8400 0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6241 -2.5567 0.8903 32 1 2.8714 -3.6039 0.8922 33 1 2.8727 -3.6046 -0.8878 34 1 0.5429 -4.9308 0.0024 35 1 0.5461 -7.2671 -0.0747 36 1 0.8365 -9.5573 -1.1230 37 1 2.0510 -11.6860 -0.9273 38 1 4.1100 -11.8163 0.4101 39 1 5.6476 -12.7416 1.0870 40 1 6.9458 -11.9510 0.1442 41 1 8.3344 -13.3257 1.4626 42 1 7.1320 -13.4250 2.7918 43 1 9.1263 -11.2222 2.1718 44 1 8.5098 -11.7706 3.7606 45 1 3.7322 -7.6584 1.3832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342345142.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:26 Heat of formation + Delta-G solvation = 56.745117 kcal Electronic energy + Delta-G solvation = -27916.899802 eV Core-core repulsion = 23934.740862 eV Total energy + Delta-G solvation = -3982.158940 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -44.30760 -41.73117 -39.80302 -38.21851 -36.82274 -35.98350 -34.87904 -33.86364 -32.17139 -31.83453 -30.41104 -30.09743 -28.51691 -26.78887 -24.91861 -24.04118 -23.35534 -22.86670 -22.21063 -21.76848 -21.56448 -19.60826 -18.83306 -18.45798 -18.00207 -17.33998 -17.01633 -16.83696 -16.52225 -16.41087 -15.77285 -15.70316 -15.60248 -15.27263 -14.99433 -14.68306 -14.34913 -14.32258 -14.25053 -14.08154 -13.90876 -13.24195 -12.99111 -12.93759 -12.70624 -12.54624 -12.52257 -12.38486 -12.31895 -12.26819 -11.78729 -11.69835 -11.53969 -11.41468 -11.17720 -11.08567 -10.66360 -10.62631 -10.13950 -9.53089 -9.12318 -8.26242 -6.36151 -0.28260 0.29077 0.97050 1.33183 1.39186 1.40102 1.52121 1.57692 1.72081 2.01537 2.39346 2.68537 2.81269 3.08505 3.11581 3.23626 3.40543 3.69884 3.86544 3.96339 4.05832 4.09718 4.25606 4.35613 4.40222 4.45849 4.46857 4.50296 4.55504 4.69389 4.80518 4.81778 4.88592 4.97965 5.09070 5.11832 5.20229 5.24040 5.26572 5.39854 5.43668 5.48640 5.56313 5.75871 5.79963 5.92515 5.94286 6.14595 6.76388 6.95666 7.32875 7.42310 7.58217 8.85791 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015808 B = 0.002038 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.843168 B =13734.039735 C =15267.781036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.547 4.547 8 H 0.056 0.944 9 C 0.025 3.975 10 C 0.159 3.841 11 N -0.723 5.723 12 C 0.695 3.305 13 O -0.619 6.619 14 N -0.672 5.672 15 C 0.157 3.843 16 C -0.121 4.121 17 C -0.081 4.081 18 C -0.115 4.115 19 C -0.023 4.023 20 C 0.232 3.768 21 N -0.330 5.330 22 N -0.341 5.341 23 C 0.159 3.841 24 N -0.493 5.493 25 C 0.084 3.916 26 C -0.110 4.110 27 C -0.040 4.040 28 C -0.112 4.112 29 H 0.266 0.734 30 H 0.014 0.986 31 H 0.010 0.990 32 H 0.040 0.960 33 H 0.046 0.954 34 H 0.411 0.589 35 H 0.427 0.573 36 H 0.167 0.833 37 H 0.181 0.819 38 H 0.151 0.849 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.144 0.856 42 H 0.102 0.898 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.847 -37.817 -1.819 38.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.202 1.202 7 C -0.586 4.586 8 H 0.074 0.926 9 C -0.013 4.013 10 C 0.035 3.965 11 N -0.378 5.378 12 C 0.395 3.605 13 O -0.499 6.499 14 N -0.321 5.321 15 C 0.061 3.939 16 C -0.143 4.143 17 C -0.099 4.099 18 C -0.136 4.136 19 C -0.026 4.026 20 C -0.032 4.032 21 N -0.169 5.169 22 N -0.180 5.180 23 C -0.109 4.109 24 N -0.185 5.185 25 C -0.036 4.036 26 C -0.147 4.147 27 C -0.080 4.080 28 C -0.135 4.135 29 H 0.075 0.925 30 H 0.032 0.968 31 H 0.028 0.972 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.247 0.753 35 H 0.267 0.733 36 H 0.184 0.816 37 H 0.199 0.801 38 H 0.169 0.831 39 H 0.138 0.862 40 H 0.130 0.870 41 H 0.162 0.838 42 H 0.121 0.879 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.704 -36.341 -1.024 37.383 hybrid contribution -0.639 1.048 -0.352 1.277 sum 8.065 -35.293 -1.376 36.229 Atomic orbital electron populations 1.70048 1.07398 1.27962 1.50959 1.25846 0.95848 1.03005 0.94401 0.85402 0.78856 0.78821 0.78004 1.19277 1.19944 1.20162 1.21473 0.93530 0.91975 1.51583 0.92569 1.19130 0.94155 0.91366 0.96636 1.21134 0.94763 0.80949 0.99659 1.45188 1.10624 1.04093 1.77884 1.16187 0.85228 0.81260 0.77808 1.90939 1.13638 1.86840 1.58503 1.42412 1.11000 1.02258 1.76470 1.17599 0.93606 0.85967 0.96681 1.21445 1.02825 0.91098 0.98884 1.21315 0.93152 0.98331 0.97110 1.21404 0.97994 0.96555 0.97610 1.17469 0.91067 0.95190 0.98900 1.22763 0.93854 0.86717 0.99889 1.74673 1.07177 1.24113 1.10979 1.73797 1.08173 1.11287 1.24785 1.27280 0.95492 0.95925 0.92236 1.47845 1.17613 1.19926 1.33089 1.23160 1.02503 0.79114 0.98780 1.22985 0.97231 0.95708 0.98810 1.21069 0.92926 0.88148 1.05861 1.21023 0.96581 0.97140 0.98788 0.92479 0.96775 0.97152 0.94138 0.93569 0.75270 0.73320 0.81556 0.80128 0.83115 0.86172 0.86987 0.83782 0.87912 0.86310 0.86461 0.88043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.86 13.29 21.45 0.28 -54.57 16 2 C 0.01 0.45 5.46 84.66 0.46 0.92 16 3 Si 0.96 44.95 29.54 68.60 2.03 46.97 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 7 C -0.55 -31.57 9.11 25.60 0.23 -31.33 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 9 C 0.02 1.28 5.09 29.85 0.15 1.43 16 10 C 0.16 7.28 5.61 86.38 0.48 7.76 16 11 N -0.72 -26.50 5.56 -478.52 -2.66 -29.16 16 12 C 0.69 25.87 8.30 179.06 1.49 27.35 16 13 O -0.62 -29.22 14.03 -3.99 -0.06 -29.28 16 14 N -0.67 -17.76 5.35 -317.28 -1.70 -19.46 16 15 C 0.16 4.11 6.27 38.10 0.24 4.35 16 16 C -0.12 -1.92 9.95 22.44 0.22 -1.69 16 17 C -0.08 -0.95 10.02 22.21 0.22 -0.73 16 18 C -0.12 -1.87 9.67 22.53 0.22 -1.65 16 19 C -0.02 -0.63 5.87 -20.10 -0.12 -0.75 16 20 C 0.23 7.24 7.83 136.41 1.07 8.30 16 21 N -0.33 -13.19 11.99 -51.03 -0.61 -13.80 16 22 N -0.34 -12.28 12.20 -49.33 -0.60 -12.88 16 23 C 0.16 3.77 8.71 138.02 1.20 4.97 16 24 N -0.49 -10.33 3.61 -500.26 -1.80 -12.13 16 25 C 0.08 0.51 7.00 86.93 0.61 1.12 16 26 C -0.11 -0.03 7.19 31.73 0.23 0.20 16 27 C -0.04 -0.33 6.84 30.59 0.21 -0.12 16 28 C -0.11 -3.76 8.30 22.64 0.19 -3.57 16 29 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 30 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 34 H 0.41 12.29 8.49 -92.71 -0.79 11.50 16 35 H 0.43 7.47 8.83 -92.70 -0.82 6.65 16 36 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 37 H 0.18 0.47 8.06 -2.91 -0.02 0.44 16 38 H 0.15 1.34 5.73 -2.91 -0.02 1.32 16 39 H 0.12 0.15 6.73 -2.39 -0.02 0.14 16 40 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.14 -0.95 8.14 -2.39 -0.02 -0.97 16 42 H 0.10 -0.15 8.14 -2.38 -0.02 -0.17 16 43 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.10 4.44 6.29 -2.91 -0.02 4.42 16 Total: -1.00 -95.17 379.65 1.44 -93.73 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -0.55 Total: 14.03 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: 7.11 Total: 16.54 kcal Atomic # 7 Polarization: -134.91 SS G_CDS: -7.09 Total: -142.00 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -0.06 Total: -29.28 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -95.17 1.44 -93.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342345142.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.480 kcal (2) G-P(sol) polarization free energy of solvation -95.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds