Wall clock time and date at job start Sat Apr 11 2020 06:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35903 * 117.00010 * 2 1 4 4 C 1.39146 * 120.47510 * 0.24900 * 3 2 1 5 5 C 1.38531 * 118.37284 * 180.26598 * 4 3 2 6 6 C 1.38256 * 119.22599 * 359.75055 * 5 4 3 7 7 N 1.31848 * 120.88231 * 359.97438 * 6 5 4 8 8 C 1.31840 * 121.78548 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.66105 * 179.97438 * 8 7 6 10 10 N 1.46495 * 109.47326 * 90.00059 * 9 8 7 11 11 C 1.34769 * 120.00210 * 180.27734 * 10 9 8 12 12 O 1.21586 * 120.00111 * 359.72483 * 11 10 9 13 13 N 1.34779 * 120.00494 * 179.72122 * 11 10 9 14 14 C 1.46492 * 120.00477 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47548 * 179.97438 * 14 13 11 16 16 C 1.38631 * 119.74937 * 269.73192 * 15 14 13 17 17 C 1.37618 * 120.24535 * 179.71672 * 16 15 14 18 18 C 1.40713 * 119.74856 * 0.56966 * 17 16 15 19 19 C 1.41392 * 120.24772 * 179.68119 * 18 17 16 20 20 H 1.08002 * 119.99894 * 155.31635 * 19 18 17 21 21 C 1.39948 * 120.00050 * 335.30811 * 19 18 17 22 22 N 1.30820 * 119.99880 * 342.23449 * 21 19 18 23 23 Si 1.86801 * 119.99890 * 162.23287 * 21 19 18 24 24 H 1.48498 * 109.47107 * 94.66512 * 23 21 19 25 25 H 1.48498 * 109.46953 * 214.66971 * 23 21 19 26 26 H 1.48500 * 109.46988 * 334.66563 * 23 21 19 27 27 C 1.40719 * 119.50774 * 359.70658 * 18 17 16 28 28 C 1.37615 * 119.74583 * 359.97438 * 27 18 17 29 29 H 1.08998 * 109.47141 * 60.00674 * 1 2 3 30 30 H 1.09008 * 109.47257 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47527 * 300.00116 * 1 2 3 32 32 H 1.07996 * 120.80774 * 0.02562 * 4 3 2 33 33 H 1.08004 * 120.39036 * 179.73132 * 5 4 3 34 34 H 1.07999 * 119.55783 * 180.02562 * 6 5 4 35 35 H 1.09004 * 109.47136 * 329.99641 * 9 8 7 36 36 H 1.08998 * 109.46846 * 209.99785 * 9 8 7 37 37 H 0.97005 * 120.00060 * 359.97438 * 10 9 8 38 38 H 0.97007 * 119.99725 * 0.02562 * 13 11 10 39 39 H 1.08998 * 109.47299 * 300.00594 * 14 13 11 40 40 H 1.09002 * 109.47194 * 60.00363 * 14 13 11 41 41 H 1.08003 * 119.87909 * 359.97438 * 16 15 14 42 42 H 1.08001 * 120.12981 * 180.27908 * 17 16 15 43 43 H 0.97001 * 119.99730 * 179.97438 * 22 21 19 44 44 H 1.07997 * 120.12903 * 179.97438 * 27 18 17 45 45 H 1.08007 * 119.87825 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2978 2.3841 0.0052 5 6 1.9716 3.5945 -0.0007 6 6 3.3541 3.5975 -0.0062 7 7 4.0333 2.4675 -0.0054 8 6 3.4306 1.2950 0.0001 9 6 4.2542 0.0330 0.0002 10 7 4.5266 -0.3723 1.3813 11 6 5.2565 -1.4781 1.6276 12 8 5.6847 -2.1422 0.7035 13 7 5.5119 -1.8480 2.8983 14 6 6.3049 -3.0503 3.1660 15 6 6.4442 -3.2391 4.6546 16 6 7.5166 -2.6690 5.3230 17 6 7.6507 -2.8300 6.6831 18 6 6.7006 -3.5868 7.3936 19 6 6.8318 -3.7647 8.7901 20 1 5.9602 -3.9767 9.3917 21 6 8.0910 -3.6662 9.3929 22 7 9.1738 -3.7585 8.6645 23 14 8.2255 -3.4031 11.2373 24 1 8.3889 -4.7149 11.9139 25 1 9.4015 -2.5450 11.5304 26 1 6.9930 -2.7401 11.7339 27 6 5.6193 -4.1657 6.7038 28 6 5.5017 -3.9860 5.3445 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.2184 2.3518 0.0097 33 1 1.4233 4.5251 -0.0013 34 1 3.8848 4.5381 -0.0104 35 1 5.1960 0.2138 -0.5180 36 1 3.7054 -0.7590 -0.5093 37 1 4.1854 0.1577 2.1186 38 1 5.1701 -1.3183 3.6356 39 1 5.8061 -3.9180 2.7344 40 1 7.2934 -2.9404 2.7200 41 1 8.2474 -2.0928 4.7749 42 1 8.4844 -2.3813 7.2026 43 1 10.0465 -3.6899 9.0823 44 1 4.8846 -4.7488 7.2390 45 1 4.6724 -4.4290 4.8130 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365406531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:50 Heat of formation + Delta-G solvation = -14.542466 kcal Electronic energy + Delta-G solvation = -27580.487481 eV Core-core repulsion = 23562.944527 eV Total energy + Delta-G solvation = -4017.542953 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.18563 -39.52576 -38.55002 -37.67493 -35.18131 -34.45151 -33.36258 -32.52382 -31.32309 -30.15902 -29.31711 -27.95622 -27.35295 -26.09138 -23.58181 -23.30282 -22.36227 -21.03668 -20.60421 -20.04198 -18.62639 -18.19416 -17.54478 -17.35814 -16.72957 -16.31103 -15.82060 -15.39339 -15.18855 -14.80901 -14.52211 -14.39663 -14.18323 -13.94963 -13.78883 -13.68835 -13.40132 -13.21847 -12.77416 -12.55872 -12.51163 -11.99918 -11.91302 -11.82207 -11.77043 -11.56282 -11.15616 -11.07126 -10.58370 -10.52221 -10.25931 -9.98083 -9.89372 -9.65482 -9.45286 -9.19668 -9.01452 -8.81566 -8.37356 -7.53181 -7.41612 -6.83921 -4.43298 0.59013 0.82862 2.55949 2.72756 2.94500 3.01761 3.03733 3.07881 3.18931 3.54013 3.58124 3.87365 3.91025 4.16128 4.26719 4.49723 4.53342 4.67685 4.69240 4.78249 4.83850 5.04065 5.10609 5.34790 5.56782 5.63617 5.68002 5.77911 5.87799 6.01235 6.02428 6.29775 6.37309 6.42643 6.57719 6.73433 6.90158 6.99285 7.00981 7.21357 7.26378 7.30822 7.54966 7.58404 7.78605 7.98653 8.06341 8.22752 8.39274 8.57071 8.81806 8.90035 8.95922 10.10290 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016143 B = 0.001888 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.105811 B =14827.864304 C =15108.933325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.300 6.300 3 C 0.098 3.902 4 C -0.169 4.169 5 C -0.126 4.126 6 C 0.059 3.941 7 N -0.430 5.430 8 C 0.083 3.917 9 C 0.202 3.798 10 N -0.743 5.743 11 C 0.702 3.298 12 O -0.600 6.600 13 N -0.734 5.734 14 C 0.203 3.797 15 C -0.242 4.242 16 C -0.080 4.080 17 C -0.170 4.170 18 C 0.116 3.884 19 C -0.459 4.459 20 H 0.078 0.922 21 C 0.075 3.925 22 N -0.787 5.787 23 Si 0.908 3.092 24 H -0.270 1.270 25 H -0.275 1.275 26 H -0.260 1.260 27 C -0.230 4.230 28 C -0.070 4.070 29 H 0.056 0.944 30 H 0.105 0.895 31 H 0.057 0.943 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.161 0.839 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.394 0.606 38 H 0.395 0.605 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.088 0.912 42 H 0.118 0.882 43 H 0.282 0.718 44 H 0.092 0.908 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.640 13.842 -14.136 25.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.211 6.211 3 C 0.049 3.951 4 C -0.196 4.196 5 C -0.146 4.146 6 C -0.098 4.098 7 N -0.139 5.139 8 C -0.057 4.057 9 C 0.077 3.923 10 N -0.399 5.399 11 C 0.402 3.598 12 O -0.479 6.479 13 N -0.388 5.388 14 C 0.081 3.919 15 C -0.244 4.244 16 C -0.099 4.099 17 C -0.189 4.189 18 C 0.114 3.886 19 C -0.488 4.488 20 H 0.097 0.903 21 C -0.143 4.143 22 N -0.412 5.412 23 Si 0.732 3.268 24 H -0.195 1.195 25 H -0.200 1.200 26 H -0.184 1.184 27 C -0.250 4.250 28 C -0.088 4.088 29 H 0.075 0.925 30 H 0.124 0.876 31 H 0.076 0.924 32 H 0.159 0.841 33 H 0.157 0.843 34 H 0.178 0.822 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.227 0.773 38 H 0.229 0.771 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.107 0.893 42 H 0.135 0.865 43 H 0.093 0.907 44 H 0.110 0.890 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.973 12.989 -14.995 24.265 hybrid contribution -1.445 0.851 1.567 2.296 sum -15.418 13.840 -13.428 24.689 Atomic orbital electron populations 1.23163 0.77958 1.04698 1.01309 1.86209 1.21625 1.25480 1.87806 1.19980 0.93138 0.85392 0.96590 1.21740 1.00956 0.92084 1.04781 1.22062 0.95795 0.98343 0.98363 1.22711 0.91448 0.96474 0.99200 1.67578 1.40011 0.97466 1.08894 1.20755 0.88177 0.94259 1.02475 1.19687 0.98622 0.90331 0.83659 1.44979 1.58675 1.28529 1.07766 1.16007 0.79049 0.80700 0.84020 1.90886 1.57715 1.55711 1.43598 1.45683 1.57719 1.30328 1.05101 1.19793 0.93842 0.84905 0.93395 1.19015 1.00900 1.11563 0.92928 1.20577 0.96003 0.98566 0.94766 1.21308 1.02129 1.02635 0.92865 1.17667 0.90250 0.87607 0.93105 1.19638 0.93866 1.42479 0.92859 0.90341 1.25950 0.95366 0.92136 1.00870 1.69826 0.99121 1.34020 1.38228 0.86305 0.79059 0.79223 0.82208 1.19506 1.19966 1.18392 1.20965 1.02969 1.07540 0.93511 1.20417 0.96622 0.97569 0.94230 0.92527 0.87620 0.92409 0.84102 0.84299 0.82171 0.89968 0.89773 0.77334 0.77137 0.92628 0.92528 0.89332 0.86450 0.90713 0.88955 0.89368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.83 101.05 0.99 1.12 16 2 O -0.30 -2.82 9.54 -19.44 -0.19 -3.01 16 3 C 0.10 0.93 6.67 -39.07 -0.26 0.67 16 4 C -0.17 -1.18 9.14 -39.14 -0.36 -1.54 16 5 C -0.13 -0.79 10.11 -39.47 -0.40 -1.19 16 6 C 0.06 0.47 11.18 -17.54 -0.20 0.28 16 7 N -0.43 -4.75 10.27 -9.35 -0.10 -4.84 16 8 C 0.08 0.92 6.16 -82.42 -0.51 0.42 16 9 C 0.20 2.59 5.75 -5.20 -0.03 2.56 16 10 N -0.74 -10.17 5.55 -66.42 -0.37 -10.54 16 11 C 0.70 12.09 8.57 -86.92 -0.74 11.35 16 12 O -0.60 -12.51 16.34 5.29 0.09 -12.42 16 13 N -0.73 -12.33 5.55 -66.42 -0.37 -12.70 16 14 C 0.20 3.85 5.79 -5.20 -0.03 3.82 16 15 C -0.24 -5.12 5.27 -104.33 -0.55 -5.67 16 16 C -0.08 -1.82 9.67 -39.66 -0.38 -2.20 16 17 C -0.17 -4.30 8.70 -38.87 -0.34 -4.64 16 18 C 0.12 3.02 5.57 -106.83 -0.60 2.43 16 19 C -0.46 -11.88 9.05 -37.74 -0.34 -12.22 16 20 H 0.08 1.95 7.91 -52.49 -0.41 1.53 16 21 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 22 N -0.79 -19.98 10.97 55.55 0.61 -19.37 16 23 Si 0.91 18.20 29.59 -169.99 -5.03 13.17 16 24 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 25 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 26 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 27 C -0.23 -5.49 9.80 -38.87 -0.38 -5.87 16 28 C -0.07 -1.51 9.67 -39.66 -0.38 -1.89 16 29 H 0.06 0.21 7.71 -51.93 -0.40 -0.19 16 30 H 0.11 0.44 8.14 -51.92 -0.42 0.02 16 31 H 0.06 0.24 7.69 -51.93 -0.40 -0.16 16 32 H 0.14 0.62 6.45 -52.49 -0.34 0.28 16 33 H 0.14 0.46 8.06 -52.48 -0.42 0.03 16 34 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.08 1.11 7.51 -51.93 -0.39 0.72 16 37 H 0.39 4.67 8.48 -40.82 -0.35 4.33 16 38 H 0.39 6.04 8.48 -40.82 -0.35 5.69 16 39 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 40 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 41 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 42 H 0.12 3.08 6.18 -52.49 -0.32 2.75 16 43 H 0.28 6.49 8.30 -40.82 -0.34 6.16 16 44 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 45 H 0.09 1.72 8.06 -52.48 -0.42 1.29 16 LS Contribution 386.62 15.07 5.83 5.83 Total: -1.00 -31.35 386.62 -10.01 -41.36 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -5.89 Total: 13.35 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -4.59 Total: -10.83 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: -0.22 Total: -47.45 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.10 Total: -15.43 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.17 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.35 -10.01 -41.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365406531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.819 kcal (2) G-P(sol) polarization free energy of solvation -31.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds