Wall clock time and date at job start Sat Apr 11 2020 06:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35903 * 117.00010 * 2 1 4 4 C 1.39146 * 120.47510 * 0.24900 * 3 2 1 5 5 C 1.38531 * 118.37284 * 180.26598 * 4 3 2 6 6 C 1.38256 * 119.22599 * 359.75055 * 5 4 3 7 7 N 1.31848 * 120.88231 * 359.97438 * 6 5 4 8 8 C 1.31840 * 121.78548 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.66105 * 179.97438 * 8 7 6 10 10 N 1.46495 * 109.47326 * 90.00059 * 9 8 7 11 11 C 1.34769 * 120.00210 * 180.27734 * 10 9 8 12 12 O 1.21586 * 120.00111 * 359.72483 * 11 10 9 13 13 N 1.34779 * 120.00494 * 179.72122 * 11 10 9 14 14 C 1.46492 * 120.00477 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47548 * 179.97438 * 14 13 11 16 16 C 1.38631 * 119.74937 * 269.73192 * 15 14 13 17 17 C 1.37618 * 120.24535 * 179.71672 * 16 15 14 18 18 C 1.40713 * 119.74856 * 0.56966 * 17 16 15 19 19 C 1.41392 * 120.24772 * 179.68119 * 18 17 16 20 20 H 1.08002 * 119.99894 * 155.31635 * 19 18 17 21 21 C 1.39948 * 120.00050 * 335.30811 * 19 18 17 22 22 N 1.30820 * 119.99880 * 342.23449 * 21 19 18 23 23 Si 1.86801 * 119.99890 * 162.23287 * 21 19 18 24 24 H 1.48498 * 109.47107 * 94.66512 * 23 21 19 25 25 H 1.48498 * 109.46953 * 214.66971 * 23 21 19 26 26 H 1.48500 * 109.46988 * 334.66563 * 23 21 19 27 27 C 1.40719 * 119.50774 * 359.70658 * 18 17 16 28 28 C 1.37615 * 119.74583 * 359.97438 * 27 18 17 29 29 H 1.08998 * 109.47141 * 60.00674 * 1 2 3 30 30 H 1.09008 * 109.47257 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47527 * 300.00116 * 1 2 3 32 32 H 1.07996 * 120.80774 * 0.02562 * 4 3 2 33 33 H 1.08004 * 120.39036 * 179.73132 * 5 4 3 34 34 H 1.07999 * 119.55783 * 180.02562 * 6 5 4 35 35 H 1.09004 * 109.47136 * 329.99641 * 9 8 7 36 36 H 1.08998 * 109.46846 * 209.99785 * 9 8 7 37 37 H 0.97005 * 120.00060 * 359.97438 * 10 9 8 38 38 H 0.97007 * 119.99725 * 0.02562 * 13 11 10 39 39 H 1.08998 * 109.47299 * 300.00594 * 14 13 11 40 40 H 1.09002 * 109.47194 * 60.00363 * 14 13 11 41 41 H 1.08003 * 119.87909 * 359.97438 * 16 15 14 42 42 H 1.08001 * 120.12981 * 180.27908 * 17 16 15 43 43 H 0.97001 * 119.99730 * 179.97438 * 22 21 19 44 44 H 1.07997 * 120.12903 * 179.97438 * 27 18 17 45 45 H 1.08007 * 119.87825 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2978 2.3841 0.0052 5 6 1.9716 3.5945 -0.0007 6 6 3.3541 3.5975 -0.0062 7 7 4.0333 2.4675 -0.0054 8 6 3.4306 1.2950 0.0001 9 6 4.2542 0.0330 0.0002 10 7 4.5266 -0.3723 1.3813 11 6 5.2565 -1.4781 1.6276 12 8 5.6847 -2.1422 0.7035 13 7 5.5119 -1.8480 2.8983 14 6 6.3049 -3.0503 3.1660 15 6 6.4442 -3.2391 4.6546 16 6 7.5166 -2.6690 5.3230 17 6 7.6507 -2.8300 6.6831 18 6 6.7006 -3.5868 7.3936 19 6 6.8318 -3.7647 8.7901 20 1 5.9602 -3.9767 9.3917 21 6 8.0910 -3.6662 9.3929 22 7 9.1738 -3.7585 8.6645 23 14 8.2255 -3.4031 11.2373 24 1 8.3889 -4.7149 11.9139 25 1 9.4015 -2.5450 11.5304 26 1 6.9930 -2.7401 11.7339 27 6 5.6193 -4.1657 6.7038 28 6 5.5017 -3.9860 5.3445 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.2184 2.3518 0.0097 33 1 1.4233 4.5251 -0.0013 34 1 3.8848 4.5381 -0.0104 35 1 5.1960 0.2138 -0.5180 36 1 3.7054 -0.7590 -0.5093 37 1 4.1854 0.1577 2.1186 38 1 5.1701 -1.3183 3.6356 39 1 5.8061 -3.9180 2.7344 40 1 7.2934 -2.9404 2.7200 41 1 8.2474 -2.0928 4.7749 42 1 8.4844 -2.3813 7.2026 43 1 10.0465 -3.6899 9.0823 44 1 4.8846 -4.7488 7.2390 45 1 4.6724 -4.4290 4.8130 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365406531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:49 Heat of formation + Delta-G solvation = -35.176608 kcal Electronic energy + Delta-G solvation = -27581.382244 eV Core-core repulsion = 23562.944527 eV Total energy + Delta-G solvation = -4018.437717 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -41.84712 -40.89251 -39.47236 -39.14683 -36.51113 -35.91864 -35.05350 -33.27079 -32.28299 -31.65129 -31.15468 -28.82973 -28.34679 -27.35358 -25.22149 -23.87343 -23.16314 -22.88784 -21.98623 -21.79447 -19.63899 -19.23212 -19.04953 -18.18622 -17.76714 -17.17399 -16.92229 -16.70239 -16.56747 -16.03681 -15.61622 -15.52758 -15.43696 -15.31319 -15.00340 -14.72237 -14.45278 -14.25238 -14.19292 -13.89170 -13.81730 -13.42323 -13.27394 -13.10443 -12.91909 -12.72490 -12.38779 -12.37827 -12.31742 -12.15752 -11.52482 -11.42746 -11.28551 -11.01959 -10.75878 -10.60804 -10.36431 -9.72528 -9.46401 -9.38782 -9.28051 -8.66516 -6.36413 -0.04174 0.24897 0.83481 1.14255 1.38711 1.45217 1.53929 1.89771 2.17696 2.20145 2.21769 2.67588 2.79569 3.18271 3.46156 3.56770 3.76322 3.78943 4.05028 4.17283 4.24164 4.33032 4.34007 4.37355 4.47477 4.52511 4.53725 4.68638 4.71033 4.75628 4.83450 5.01860 5.05064 5.10067 5.15223 5.35746 5.40042 5.43462 5.46927 5.56197 5.69265 5.88034 6.03653 6.08987 6.20789 6.21849 6.36345 6.68233 6.92002 6.94810 7.00750 7.10190 7.58902 8.30323 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016143 B = 0.001888 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.105811 B =14827.864304 C =15108.933325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.325 6.325 3 C 0.092 3.908 4 C -0.166 4.166 5 C -0.111 4.111 6 C 0.049 3.951 7 N -0.461 5.461 8 C 0.056 3.944 9 C 0.207 3.793 10 N -0.726 5.726 11 C 0.702 3.298 12 O -0.637 6.637 13 N -0.727 5.727 14 C 0.213 3.787 15 C -0.226 4.226 16 C -0.082 4.082 17 C -0.192 4.192 18 C 0.086 3.914 19 C -0.496 4.496 20 H 0.078 0.922 21 C 0.034 3.966 22 N -0.821 5.821 23 Si 0.982 3.018 24 H -0.263 1.263 25 H -0.267 1.267 26 H -0.257 1.257 27 C -0.243 4.243 28 C -0.067 4.067 29 H 0.073 0.927 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.171 0.829 33 H 0.177 0.823 34 H 0.183 0.817 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.404 0.596 38 H 0.404 0.596 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.289 0.711 44 H 0.099 0.901 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.854 15.647 -14.304 27.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.237 6.237 3 C 0.043 3.957 4 C -0.192 4.192 5 C -0.130 4.130 6 C -0.110 4.110 7 N -0.171 5.171 8 C -0.083 4.083 9 C 0.083 3.917 10 N -0.382 5.382 11 C 0.402 3.598 12 O -0.519 6.519 13 N -0.382 5.382 14 C 0.090 3.910 15 C -0.227 4.227 16 C -0.101 4.101 17 C -0.212 4.212 18 C 0.084 3.916 19 C -0.525 4.525 20 H 0.096 0.904 21 C -0.181 4.181 22 N -0.447 5.447 23 Si 0.803 3.197 24 H -0.188 1.188 25 H -0.191 1.191 26 H -0.181 1.181 27 C -0.262 4.262 28 C -0.085 4.085 29 H 0.092 0.908 30 H 0.130 0.870 31 H 0.089 0.911 32 H 0.188 0.812 33 H 0.195 0.805 34 H 0.200 0.800 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.239 0.761 38 H 0.240 0.760 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.100 0.900 44 H 0.118 0.882 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -16.222 14.814 -15.164 26.694 hybrid contribution -0.872 0.370 1.439 1.723 sum -17.094 15.184 -13.725 26.667 Atomic orbital electron populations 1.23430 0.75985 1.05756 1.02760 1.86171 1.23787 1.25920 1.87872 1.20023 0.92712 0.86368 0.96644 1.22123 1.02379 0.91272 1.03431 1.22485 0.95188 0.99634 0.95700 1.23216 0.92720 0.96299 0.98731 1.67476 1.41388 0.98231 1.10024 1.20388 0.88839 0.93507 1.05530 1.19576 0.98101 0.91519 0.82551 1.44868 1.57283 1.27281 1.08803 1.16074 0.79103 0.81166 0.83436 1.90861 1.59300 1.57134 1.44643 1.45380 1.57501 1.29876 1.05442 1.19572 0.94067 0.85871 0.91509 1.19187 0.99734 1.09883 0.93920 1.20755 0.96747 0.98541 0.94018 1.21257 1.02173 1.03789 0.93945 1.18009 0.91329 0.88467 0.93827 1.19889 0.94694 1.44539 0.93355 0.90400 1.26798 0.94532 0.91172 1.05610 1.69878 0.99777 1.34711 1.40320 0.85195 0.79154 0.79331 0.76069 1.18767 1.19107 1.18102 1.21160 1.02764 1.07737 0.94566 1.20685 0.97293 0.96984 0.93560 0.90800 0.86952 0.91104 0.81162 0.80539 0.79988 0.91657 0.90682 0.76099 0.76042 0.92341 0.93027 0.87924 0.88181 0.90032 0.88235 0.86602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.83 113.37 1.11 1.24 16 2 O -0.33 -5.79 9.54 -92.46 -0.88 -6.67 16 3 C 0.09 1.61 6.67 22.60 0.15 1.76 16 4 C -0.17 -1.80 9.14 22.56 0.21 -1.60 16 5 C -0.11 -1.00 10.11 22.34 0.23 -0.77 16 6 C 0.05 0.67 11.18 84.69 0.95 1.62 16 7 N -0.46 -9.90 10.27 -183.50 -1.88 -11.79 16 8 C 0.06 1.22 6.16 42.67 0.26 1.49 16 9 C 0.21 5.47 5.75 85.63 0.49 5.96 16 10 N -0.73 -19.85 5.55 -482.32 -2.68 -22.53 16 11 C 0.70 24.03 8.57 179.06 1.53 25.56 16 12 O -0.64 -26.77 16.34 -3.99 -0.07 -26.84 16 13 N -0.73 -23.75 5.55 -482.31 -2.68 -26.42 16 14 C 0.21 7.85 5.79 85.64 0.50 8.34 16 15 C -0.23 -9.34 5.27 -19.67 -0.10 -9.44 16 16 C -0.08 -3.72 9.67 22.22 0.21 -3.51 16 17 C -0.19 -9.97 8.70 22.73 0.20 -9.77 16 18 C 0.09 4.58 5.57 -21.29 -0.12 4.46 16 19 C -0.50 -26.32 9.05 23.46 0.21 -26.11 16 20 H 0.08 3.97 7.91 -2.91 -0.02 3.95 16 21 C 0.03 1.71 5.14 85.26 0.44 2.15 16 22 N -0.82 -42.72 10.97 21.83 0.24 -42.48 16 23 Si 0.98 37.58 29.59 68.60 2.03 39.61 16 24 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 25 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 26 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 27 C -0.24 -11.61 9.80 22.73 0.22 -11.39 16 28 C -0.07 -2.81 9.67 22.22 0.21 -2.60 16 29 H 0.07 0.35 7.71 -2.39 -0.02 0.33 16 30 H 0.11 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.07 0.40 7.69 -2.39 -0.02 0.38 16 32 H 0.17 0.76 6.45 -2.91 -0.02 0.74 16 33 H 0.18 0.24 8.06 -2.91 -0.02 0.22 16 34 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 35 H 0.07 1.90 8.14 -2.38 -0.02 1.89 16 36 H 0.08 2.08 7.51 -2.39 -0.02 2.07 16 37 H 0.40 9.38 8.48 -92.70 -0.79 8.59 16 38 H 0.40 11.83 8.48 -92.70 -0.79 11.05 16 39 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 40 H 0.05 1.98 8.08 -2.39 -0.02 1.96 16 41 H 0.10 4.31 8.06 -2.91 -0.02 4.28 16 42 H 0.10 5.47 6.18 -2.91 -0.02 5.45 16 43 H 0.29 13.57 8.30 -92.71 -0.77 12.80 16 44 H 0.10 4.50 8.06 -2.91 -0.02 4.47 16 45 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -70.15 386.62 0.26 -69.89 By element: Atomic # 1 Polarization: 40.36 SS G_CDS: -0.53 Total: 39.83 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: 6.71 Total: -12.59 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -7.00 Total: -103.23 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.95 Total: -33.51 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Total: -70.15 0.26 -69.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365406531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.714 kcal (2) G-P(sol) polarization free energy of solvation -70.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds