Wall clock time and date at job start Sat Apr 11 2020 06:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35669 * 117.00572 * 2 1 4 4 N 1.32274 * 119.68461 * 0.02562 * 3 2 1 5 5 C 1.31933 * 121.65159 * 179.97438 * 4 3 2 6 6 C 1.38091 * 120.83493 * 359.97351 * 5 4 3 7 7 C 1.38781 * 119.28381 * 0.02703 * 6 5 4 8 8 C 1.38420 * 118.48882 * 0.27182 * 7 6 5 9 9 C 1.50700 * 120.44608 * 179.72638 * 8 7 6 10 10 N 1.46500 * 109.47231 * 259.99775 * 9 8 7 11 11 C 1.34776 * 120.00503 * 180.02562 * 10 9 8 12 12 O 1.21587 * 119.99610 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00402 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00207 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.47426 * 180.02562 * 14 13 11 16 16 C 1.38641 * 119.74888 * 269.73009 * 15 14 13 17 17 C 1.37620 * 120.24426 * 179.72017 * 16 15 14 18 18 C 1.40712 * 119.74853 * 0.56681 * 17 16 15 19 19 C 1.41387 * 120.24614 * 179.68006 * 18 17 16 20 20 H 1.08000 * 120.00134 * 204.40743 * 19 18 17 21 21 C 1.39949 * 119.99728 * 24.40741 * 19 18 17 22 22 N 1.30818 * 120.00411 * 17.85483 * 21 19 18 23 23 Si 1.86805 * 119.99915 * 197.85416 * 21 19 18 24 24 H 1.48498 * 109.46984 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47001 * 119.99784 * 23 21 19 26 26 H 1.48497 * 109.47495 * 239.99852 * 23 21 19 27 27 C 1.40717 * 119.51147 * 359.70750 * 18 17 16 28 28 C 1.37623 * 119.74577 * 0.02562 * 27 18 17 29 29 H 1.09004 * 109.46665 * 300.00223 * 1 2 3 30 30 H 1.09001 * 109.46765 * 59.99380 * 1 2 3 31 31 H 1.08996 * 109.47320 * 179.97438 * 1 2 3 32 32 H 1.08007 * 119.58773 * 180.02562 * 5 4 3 33 33 H 1.07998 * 120.35912 * 180.02562 * 6 5 4 34 34 H 1.08001 * 120.75696 * 180.02562 * 7 6 5 35 35 H 1.08993 * 109.47229 * 19.99930 * 9 8 7 36 36 H 1.08999 * 109.47357 * 140.00413 * 9 8 7 37 37 H 0.97004 * 119.99661 * 0.02562 * 10 9 8 38 38 H 0.97004 * 119.99762 * 0.02562 * 13 11 10 39 39 H 1.09007 * 109.47223 * 299.99997 * 14 13 11 40 40 H 1.09000 * 109.46831 * 59.99875 * 14 13 11 41 41 H 1.07997 * 119.86964 * 359.97438 * 16 15 14 42 42 H 1.08004 * 120.11878 * 180.27824 * 17 16 15 43 43 H 0.97001 * 120.00542 * 180.02562 * 22 21 19 44 44 H 1.07995 * 120.13047 * 179.97438 * 27 18 17 45 45 H 1.07995 * 119.87609 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 7 1.3186 2.3142 0.0005 5 6 1.8770 3.5095 0.0010 6 6 3.2509 3.6490 0.0016 7 6 4.0485 2.5133 0.0011 8 6 3.4323 1.2738 -0.0058 9 6 4.2558 0.0117 -0.0129 10 7 4.3217 -0.5208 -1.3761 11 6 5.0095 -1.6528 -1.6250 12 8 5.5757 -2.2319 -0.7181 13 7 5.0705 -2.1424 -2.8792 14 6 5.8186 -3.3725 -3.1497 15 6 5.7310 -3.7012 -4.6178 16 6 4.7013 -4.5046 -5.0827 17 6 4.6082 -4.8065 -6.4222 18 6 5.5701 -4.3061 -7.3191 19 6 5.4885 -4.6152 -8.6963 20 1 6.3773 -4.5885 -9.3094 21 6 4.2560 -4.9558 -9.2652 22 7 3.1441 -4.6597 -8.6428 23 14 4.1986 -5.8334 -10.9133 24 1 5.5823 -6.0527 -11.4057 25 1 3.5173 -7.1431 -10.7532 26 1 3.4507 -5.0025 -11.8908 27 6 6.6142 -3.4963 -6.8351 28 6 6.6844 -3.2028 -5.4924 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.2518 4.3902 0.0019 33 1 3.6998 4.6312 0.0025 34 1 5.1254 2.5947 0.0019 35 1 5.2631 0.2331 0.3398 36 1 3.7951 -0.7265 0.6435 37 1 3.8703 -0.0586 -2.0996 38 1 4.6197 -1.6798 -3.6028 39 1 6.8629 -3.2315 -2.8710 40 1 5.3946 -4.1909 -2.5679 41 1 3.9671 -4.8916 -4.3917 42 1 3.8026 -5.4289 -6.7828 43 1 2.2899 -4.8960 -9.0369 44 1 7.3580 -3.1073 -7.5146 45 1 7.4850 -2.5819 -5.1186 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413684220.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:04 Heat of formation + Delta-G solvation = -16.474229 kcal Electronic energy + Delta-G solvation = -27717.870416 eV Core-core repulsion = 23700.243696 eV Total energy + Delta-G solvation = -4017.626721 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.09420 -39.55092 -38.16549 -37.70186 -35.41805 -34.51820 -33.39336 -32.60890 -31.25427 -30.16401 -29.33791 -27.67234 -27.18756 -25.98378 -23.59759 -23.32580 -22.33900 -21.05986 -20.61607 -20.06260 -18.68501 -18.21477 -17.43895 -17.38188 -16.51782 -16.14580 -15.65945 -15.41946 -15.20871 -14.69118 -14.51362 -14.40621 -14.06515 -13.88872 -13.77933 -13.59912 -13.38423 -13.22911 -12.90991 -12.51143 -12.32981 -12.02265 -11.94340 -11.76566 -11.65522 -11.50620 -11.16058 -11.02330 -10.69908 -10.43617 -10.32339 -10.00551 -9.92374 -9.67122 -9.47445 -9.22722 -9.04826 -8.81005 -8.39487 -7.55669 -7.43864 -6.86478 -4.45568 0.66266 0.91869 2.54354 2.80105 2.95303 2.99850 3.03000 3.07824 3.22028 3.52352 3.55875 3.85919 3.91476 4.44830 4.47071 4.47563 4.60648 4.77295 4.88710 5.03271 5.07275 5.11921 5.34420 5.39426 5.61742 5.66308 5.69603 5.84884 5.88986 5.99114 6.05193 6.26835 6.34125 6.38924 6.56697 6.88134 6.90888 6.96688 6.99149 7.19217 7.24493 7.28547 7.47129 7.52773 7.76341 7.96954 8.03945 8.20510 8.37425 8.55116 8.79823 8.87828 8.93440 10.07489 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014239 B = 0.002039 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.939093 B =13730.638822 C =14516.907156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.297 6.297 3 C 0.337 3.663 4 N -0.543 5.543 5 C 0.144 3.856 6 C -0.214 4.214 7 C -0.022 4.022 8 C -0.178 4.178 9 C 0.197 3.803 10 N -0.745 5.745 11 C 0.701 3.299 12 O -0.602 6.602 13 N -0.734 5.734 14 C 0.203 3.797 15 C -0.243 4.243 16 C -0.081 4.081 17 C -0.170 4.170 18 C 0.116 3.884 19 C -0.458 4.458 20 H 0.079 0.921 21 C 0.075 3.925 22 N -0.788 5.788 23 Si 0.908 3.092 24 H -0.260 1.260 25 H -0.271 1.271 26 H -0.274 1.274 27 C -0.230 4.230 28 C -0.070 4.070 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.160 0.840 33 H 0.139 0.861 34 H 0.144 0.856 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.394 0.606 38 H 0.396 0.604 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.088 0.912 42 H 0.118 0.882 43 H 0.281 0.719 44 H 0.092 0.908 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.805 14.545 14.263 20.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.203 6.203 3 C 0.158 3.842 4 N -0.266 5.266 5 C -0.012 4.012 6 C -0.235 4.235 7 C -0.048 4.048 8 C -0.181 4.181 9 C 0.072 3.928 10 N -0.402 5.402 11 C 0.401 3.599 12 O -0.481 6.481 13 N -0.388 5.388 14 C 0.081 3.919 15 C -0.245 4.245 16 C -0.100 4.100 17 C -0.189 4.189 18 C 0.113 3.887 19 C -0.487 4.487 20 H 0.097 0.903 21 C -0.143 4.143 22 N -0.413 5.413 23 Si 0.732 3.268 24 H -0.183 1.183 25 H -0.196 1.196 26 H -0.199 1.199 27 C -0.250 4.250 28 C -0.088 4.088 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.177 0.823 33 H 0.157 0.843 34 H 0.162 0.838 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.227 0.773 38 H 0.230 0.770 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.106 0.894 42 H 0.136 0.864 43 H 0.092 0.908 44 H 0.111 0.889 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.335 13.589 15.083 20.991 hybrid contribution -0.072 0.431 -1.492 1.555 sum -5.407 14.020 13.591 20.261 Atomic orbital electron populations 1.22903 0.77014 1.03294 1.02344 1.86339 1.22986 1.23989 1.87014 1.19745 0.88848 0.84941 0.90694 1.67393 1.40803 0.98817 1.19608 1.22477 0.93016 0.93679 0.91986 1.22005 0.94876 0.99875 1.06702 1.21456 1.00926 0.90568 0.91878 1.19978 0.91316 0.96711 1.10099 1.19672 0.98355 0.90776 0.83976 1.45117 1.57612 1.27399 1.10049 1.16053 0.79654 0.80416 0.83791 1.90880 1.51484 1.61386 1.44399 1.45707 1.56893 1.28959 1.07283 1.19796 0.94503 0.84046 0.93556 1.19021 1.01781 1.10803 0.92862 1.20577 0.96095 0.97802 0.95496 1.21313 1.02203 1.03955 0.91418 1.17673 0.90194 0.87568 0.93253 1.19684 0.94514 1.40240 0.94270 0.90257 1.25949 0.95148 0.93501 0.99712 1.69824 0.98813 1.34188 1.38452 0.86262 0.79654 0.79644 0.81214 1.18316 1.19612 1.19939 1.20977 1.03423 1.06139 0.94429 1.20415 0.96758 0.98161 0.93512 0.92335 0.92165 0.88394 0.82283 0.84288 0.83796 0.90825 0.90446 0.77269 0.77020 0.92667 0.92601 0.89369 0.86395 0.90786 0.88934 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.38 101.05 1.05 1.40 16 2 O -0.30 -3.45 9.72 -18.71 -0.18 -3.63 16 3 C 0.34 3.73 7.47 -17.12 -0.13 3.60 16 4 N -0.54 -5.55 9.22 -13.33 -0.12 -5.67 16 5 C 0.14 1.09 11.18 -17.56 -0.20 0.90 16 6 C -0.21 -1.41 10.11 -39.43 -0.40 -1.81 16 7 C -0.02 -0.17 9.81 -39.31 -0.39 -0.56 16 8 C -0.18 -1.77 5.28 -104.32 -0.55 -2.33 16 9 C 0.20 2.30 5.49 -5.19 -0.03 2.27 16 10 N -0.75 -9.75 5.55 -66.42 -0.37 -10.12 16 11 C 0.70 11.80 8.57 -86.92 -0.74 11.05 16 12 O -0.60 -12.26 16.34 5.29 0.09 -12.17 16 13 N -0.73 -12.28 5.55 -66.42 -0.37 -12.65 16 14 C 0.20 3.78 5.79 -5.20 -0.03 3.75 16 15 C -0.24 -5.07 5.27 -104.33 -0.55 -5.62 16 16 C -0.08 -1.81 9.67 -39.66 -0.38 -2.20 16 17 C -0.17 -4.25 8.70 -38.87 -0.34 -4.59 16 18 C 0.12 2.98 5.57 -106.83 -0.60 2.39 16 19 C -0.46 -11.77 9.05 -37.74 -0.34 -12.12 16 20 H 0.08 1.97 7.91 -52.49 -0.42 1.55 16 21 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 22 N -0.79 -19.69 10.95 55.55 0.61 -19.08 16 23 Si 0.91 18.10 29.60 -169.99 -5.03 13.07 16 24 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 25 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 26 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 27 C -0.23 -5.44 9.80 -38.87 -0.38 -5.82 16 28 C -0.07 -1.49 9.67 -39.66 -0.38 -1.88 16 29 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 30 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.16 0.73 8.06 -52.48 -0.42 0.31 16 33 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 34 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 35 H 0.07 0.82 8.03 -51.93 -0.42 0.40 16 36 H 0.08 1.02 7.86 -51.93 -0.41 0.61 16 37 H 0.39 4.54 8.48 -40.82 -0.35 4.20 16 38 H 0.40 6.19 8.48 -40.82 -0.35 5.84 16 39 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 40 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 41 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 42 H 0.12 3.07 6.16 -52.48 -0.32 2.75 16 43 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 44 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 45 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 389.26 15.07 5.87 5.87 Total: -1.00 -30.59 389.26 -10.02 -40.61 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -6.03 Total: 13.59 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -4.48 Total: -9.81 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: -0.25 Total: -47.52 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.10 Total: -15.80 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.59 -10.02 -40.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413684220.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.136 kcal (2) G-P(sol) polarization free energy of solvation -30.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds