Wall clock time and date at job start Sat Apr 11 2020 06:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35669 * 117.00572 * 2 1 4 4 N 1.32274 * 119.68461 * 0.02562 * 3 2 1 5 5 C 1.31933 * 121.65159 * 179.97438 * 4 3 2 6 6 C 1.38091 * 120.83493 * 359.97351 * 5 4 3 7 7 C 1.38781 * 119.28381 * 0.02703 * 6 5 4 8 8 C 1.38420 * 118.48882 * 0.27182 * 7 6 5 9 9 C 1.50700 * 120.44608 * 179.72638 * 8 7 6 10 10 N 1.46500 * 109.47231 * 259.99775 * 9 8 7 11 11 C 1.34776 * 120.00503 * 180.02562 * 10 9 8 12 12 O 1.21587 * 119.99610 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00402 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00207 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.47426 * 180.02562 * 14 13 11 16 16 C 1.38641 * 119.74888 * 269.73009 * 15 14 13 17 17 C 1.37620 * 120.24426 * 179.72017 * 16 15 14 18 18 C 1.40712 * 119.74853 * 0.56681 * 17 16 15 19 19 C 1.41387 * 120.24614 * 179.68006 * 18 17 16 20 20 H 1.08000 * 120.00134 * 204.40743 * 19 18 17 21 21 C 1.39949 * 119.99728 * 24.40741 * 19 18 17 22 22 N 1.30818 * 120.00411 * 17.85483 * 21 19 18 23 23 Si 1.86805 * 119.99915 * 197.85416 * 21 19 18 24 24 H 1.48498 * 109.46984 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47001 * 119.99784 * 23 21 19 26 26 H 1.48497 * 109.47495 * 239.99852 * 23 21 19 27 27 C 1.40717 * 119.51147 * 359.70750 * 18 17 16 28 28 C 1.37623 * 119.74577 * 0.02562 * 27 18 17 29 29 H 1.09004 * 109.46665 * 300.00223 * 1 2 3 30 30 H 1.09001 * 109.46765 * 59.99380 * 1 2 3 31 31 H 1.08996 * 109.47320 * 179.97438 * 1 2 3 32 32 H 1.08007 * 119.58773 * 180.02562 * 5 4 3 33 33 H 1.07998 * 120.35912 * 180.02562 * 6 5 4 34 34 H 1.08001 * 120.75696 * 180.02562 * 7 6 5 35 35 H 1.08993 * 109.47229 * 19.99930 * 9 8 7 36 36 H 1.08999 * 109.47357 * 140.00413 * 9 8 7 37 37 H 0.97004 * 119.99661 * 0.02562 * 10 9 8 38 38 H 0.97004 * 119.99762 * 0.02562 * 13 11 10 39 39 H 1.09007 * 109.47223 * 299.99997 * 14 13 11 40 40 H 1.09000 * 109.46831 * 59.99875 * 14 13 11 41 41 H 1.07997 * 119.86964 * 359.97438 * 16 15 14 42 42 H 1.08004 * 120.11878 * 180.27824 * 17 16 15 43 43 H 0.97001 * 120.00542 * 180.02562 * 22 21 19 44 44 H 1.07995 * 120.13047 * 179.97438 * 27 18 17 45 45 H 1.07995 * 119.87609 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 7 1.3186 2.3142 0.0005 5 6 1.8770 3.5095 0.0010 6 6 3.2509 3.6490 0.0016 7 6 4.0485 2.5133 0.0011 8 6 3.4323 1.2738 -0.0058 9 6 4.2558 0.0117 -0.0129 10 7 4.3217 -0.5208 -1.3761 11 6 5.0095 -1.6528 -1.6250 12 8 5.5757 -2.2319 -0.7181 13 7 5.0705 -2.1424 -2.8792 14 6 5.8186 -3.3725 -3.1497 15 6 5.7310 -3.7012 -4.6178 16 6 4.7013 -4.5046 -5.0827 17 6 4.6082 -4.8065 -6.4222 18 6 5.5701 -4.3061 -7.3191 19 6 5.4885 -4.6152 -8.6963 20 1 6.3773 -4.5885 -9.3094 21 6 4.2560 -4.9558 -9.2652 22 7 3.1441 -4.6597 -8.6428 23 14 4.1986 -5.8334 -10.9133 24 1 5.5823 -6.0527 -11.4057 25 1 3.5173 -7.1431 -10.7532 26 1 3.4507 -5.0025 -11.8908 27 6 6.6142 -3.4963 -6.8351 28 6 6.6844 -3.2028 -5.4924 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.2518 4.3902 0.0019 33 1 3.6998 4.6312 0.0025 34 1 5.1254 2.5947 0.0019 35 1 5.2631 0.2331 0.3398 36 1 3.7951 -0.7265 0.6435 37 1 3.8703 -0.0586 -2.0996 38 1 4.6197 -1.6798 -3.6028 39 1 6.8629 -3.2315 -2.8710 40 1 5.3946 -4.1909 -2.5679 41 1 3.9671 -4.8916 -4.3917 42 1 3.8026 -5.4289 -6.7828 43 1 2.2899 -4.8960 -9.0369 44 1 7.3580 -3.1073 -7.5146 45 1 7.4850 -2.5819 -5.1186 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413684220.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:03 Heat of formation + Delta-G solvation = -36.971024 kcal Electronic energy + Delta-G solvation = -27718.759224 eV Core-core repulsion = 23700.243696 eV Total energy + Delta-G solvation = -4018.515528 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.80863 -40.87727 -39.46897 -38.87003 -36.60720 -36.02545 -35.04809 -33.47480 -32.19779 -31.63674 -31.15298 -28.78337 -28.24373 -27.13670 -25.20188 -23.98394 -23.13520 -22.88772 -21.95230 -21.78119 -19.56426 -19.30545 -19.23455 -18.15528 -17.61187 -17.17994 -16.95384 -16.57316 -16.36547 -16.01513 -15.65930 -15.51924 -15.47272 -15.21224 -15.05850 -14.74604 -14.30899 -14.20106 -14.09547 -13.91530 -13.81912 -13.49280 -13.34303 -12.99977 -12.82199 -12.71069 -12.51178 -12.48197 -12.19444 -12.08411 -11.55808 -11.41600 -11.28527 -11.03680 -10.85049 -10.66296 -10.33181 -9.70348 -9.49322 -9.39019 -9.28045 -8.67075 -6.36657 0.00651 0.29949 0.83428 1.14306 1.38561 1.45191 1.53473 1.95143 2.12919 2.19851 2.20759 2.68923 2.80811 3.27619 3.47268 3.73231 3.76832 3.82876 4.06579 4.18957 4.26725 4.34587 4.39472 4.39639 4.52795 4.53062 4.61914 4.69021 4.73425 4.78405 4.84197 5.05219 5.08796 5.14844 5.23291 5.35916 5.43378 5.45240 5.50168 5.57715 5.69099 5.88678 6.05624 6.09083 6.21726 6.22248 6.36259 6.68248 6.82662 6.91949 7.00603 7.11284 7.60832 8.29478 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014239 B = 0.002039 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.939093 B =13730.638822 C =14516.907156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.321 6.321 3 C 0.316 3.684 4 N -0.562 5.562 5 C 0.137 3.863 6 C -0.203 4.203 7 C -0.021 4.021 8 C -0.190 4.190 9 C 0.201 3.799 10 N -0.730 5.730 11 C 0.701 3.299 12 O -0.637 6.637 13 N -0.730 5.730 14 C 0.213 3.787 15 C -0.225 4.225 16 C -0.082 4.082 17 C -0.192 4.192 18 C 0.086 3.914 19 C -0.495 4.495 20 H 0.076 0.924 21 C 0.036 3.964 22 N -0.819 5.819 23 Si 0.981 3.019 24 H -0.258 1.258 25 H -0.265 1.265 26 H -0.265 1.265 27 C -0.243 4.243 28 C -0.066 4.066 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.110 0.890 32 H 0.189 0.811 33 H 0.173 0.827 34 H 0.166 0.834 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.403 0.597 38 H 0.403 0.597 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.289 0.711 44 H 0.099 0.901 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.505 16.560 14.657 22.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.228 6.228 3 C 0.137 3.863 4 N -0.286 5.286 5 C -0.018 4.018 6 C -0.222 4.222 7 C -0.046 4.046 8 C -0.194 4.194 9 C 0.077 3.923 10 N -0.385 5.385 11 C 0.401 3.599 12 O -0.520 6.520 13 N -0.385 5.385 14 C 0.090 3.910 15 C -0.227 4.227 16 C -0.101 4.101 17 C -0.212 4.212 18 C 0.083 3.917 19 C -0.524 4.524 20 H 0.095 0.905 21 C -0.180 4.180 22 N -0.445 5.445 23 Si 0.801 3.199 24 H -0.182 1.182 25 H -0.190 1.190 26 H -0.190 1.190 27 C -0.263 4.263 28 C -0.085 4.085 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.128 0.872 32 H 0.206 0.794 33 H 0.191 0.809 34 H 0.183 0.817 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.238 0.762 38 H 0.238 0.762 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.099 0.901 44 H 0.117 0.883 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.056 15.651 15.482 22.588 hybrid contribution -0.169 -0.034 -1.445 1.455 sum -5.226 15.617 14.038 21.639 Atomic orbital electron populations 1.22992 0.76114 1.04125 1.02342 1.86296 1.24106 1.24959 1.87410 1.19936 0.89333 0.85071 0.91934 1.67415 1.41383 0.99466 1.20305 1.23107 0.94224 0.93644 0.90821 1.22380 0.94351 1.00954 1.04550 1.21777 1.02196 0.89928 0.90729 1.19885 0.90791 0.96754 1.11925 1.19653 0.98872 0.91196 0.82575 1.45035 1.56268 1.26096 1.11127 1.16107 0.79665 0.80978 0.83122 1.90859 1.53126 1.62648 1.45337 1.45438 1.56865 1.28479 1.07690 1.19590 0.95083 0.84770 0.91584 1.19207 1.00468 1.09019 0.94024 1.20758 0.96825 0.97751 0.94779 1.21259 1.02336 1.05006 0.92570 1.18008 0.91280 0.88589 0.93819 1.19908 0.95251 1.42561 0.94709 0.90539 1.26757 0.94330 0.93563 1.03333 1.69866 0.99467 1.34909 1.40239 0.85179 0.79615 0.78446 0.76624 1.18182 1.18987 1.18990 1.21171 1.03251 1.06156 0.95707 1.20688 0.97333 0.97820 0.92661 0.92004 0.92434 0.87195 0.79419 0.80946 0.81672 0.90148 0.92398 0.76178 0.76221 0.92134 0.92962 0.87951 0.88160 0.90054 0.88294 0.86525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 10.38 113.37 1.18 1.87 16 2 O -0.32 -7.53 9.72 -89.86 -0.87 -8.41 16 3 C 0.32 6.81 7.47 84.78 0.63 7.45 16 4 N -0.56 -10.83 9.22 -308.94 -2.85 -13.67 16 5 C 0.14 1.72 11.18 84.64 0.95 2.67 16 6 C -0.20 -1.96 10.11 22.36 0.23 -1.73 16 7 C -0.02 -0.26 9.81 22.44 0.22 -0.04 16 8 C -0.19 -3.58 5.28 -19.67 -0.10 -3.68 16 9 C 0.20 4.56 5.49 85.63 0.47 5.03 16 10 N -0.73 -18.36 5.55 -482.31 -2.68 -21.04 16 11 C 0.70 22.88 8.57 179.06 1.53 24.41 16 12 O -0.64 -25.53 16.34 -3.99 -0.07 -25.59 16 13 N -0.73 -23.37 5.55 -482.31 -2.68 -26.05 16 14 C 0.21 7.60 5.79 85.63 0.50 8.09 16 15 C -0.23 -9.16 5.27 -19.67 -0.10 -9.26 16 16 C -0.08 -3.69 9.67 22.22 0.21 -3.48 16 17 C -0.19 -9.88 8.70 22.73 0.20 -9.69 16 18 C 0.09 4.51 5.57 -21.29 -0.12 4.39 16 19 C -0.50 -26.18 9.05 23.46 0.21 -25.97 16 20 H 0.08 3.91 7.91 -2.91 -0.02 3.89 16 21 C 0.04 1.77 5.14 85.26 0.44 2.20 16 22 N -0.82 -41.87 10.95 21.83 0.24 -41.63 16 23 Si 0.98 37.41 29.60 68.60 2.03 39.44 16 24 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 25 H -0.27 -9.77 7.11 99.48 0.71 -9.07 16 26 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 27 C -0.24 -11.53 9.80 22.73 0.22 -11.31 16 28 C -0.07 -2.76 9.67 22.22 0.21 -2.54 16 29 H 0.06 1.01 8.10 -2.38 -0.02 0.99 16 30 H 0.06 1.01 8.10 -2.39 -0.02 0.99 16 31 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.19 1.10 8.06 -2.91 -0.02 1.08 16 33 H 0.17 0.51 8.06 -2.91 -0.02 0.49 16 34 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 35 H 0.08 1.71 8.03 -2.39 -0.02 1.69 16 36 H 0.06 1.55 7.86 -2.39 -0.02 1.53 16 37 H 0.40 8.79 8.48 -92.71 -0.79 8.01 16 38 H 0.40 11.95 8.48 -92.71 -0.79 11.16 16 39 H 0.06 2.13 8.08 -2.38 -0.02 2.11 16 40 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 41 H 0.10 4.23 8.06 -2.91 -0.02 4.20 16 42 H 0.10 5.44 6.16 -2.91 -0.02 5.42 16 43 H 0.29 13.29 8.30 -92.71 -0.77 12.52 16 44 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 45 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -67.57 389.26 -0.53 -68.11 By element: Atomic # 1 Polarization: 40.95 SS G_CDS: -0.54 Total: 40.42 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: 6.88 Total: -11.58 kcal Atomic # 7 Polarization: -94.43 SS G_CDS: -7.96 Total: -102.39 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -0.94 Total: -34.00 kcal Atomic # 14 Polarization: 37.41 SS G_CDS: 2.03 Total: 39.44 kcal Total: -67.57 -0.53 -68.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413684220.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.135 kcal (2) G-P(sol) polarization free energy of solvation -67.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds