Wall clock time and date at job start Sat Apr 11 2020 06:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35732 * 117.00481 * 2 1 4 4 C 1.39288 * 120.84650 * 0.02659 * 3 2 1 5 5 C 1.37950 * 119.09142 * 179.97438 * 4 3 2 6 6 N 1.31978 * 120.82705 * 359.74464 * 5 4 3 7 7 C 1.31943 * 121.85954 * 0.52536 * 6 5 4 8 8 C 1.37991 * 120.82285 * 359.47205 * 7 6 5 9 9 C 1.50704 * 120.45437 * 180.23294 * 8 7 6 10 10 N 1.46503 * 109.47257 * 260.00211 * 9 8 7 11 11 C 1.34770 * 119.99742 * 180.02562 * 10 9 8 12 12 O 1.21587 * 120.00653 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99846 * 180.02562 * 11 10 9 14 14 C 1.46508 * 120.00029 * 180.02562 * 13 11 10 15 15 C 1.50707 * 109.46699 * 179.97438 * 14 13 11 16 16 C 1.38631 * 119.74562 * 269.72133 * 15 14 13 17 17 C 1.37618 * 120.24303 * 179.72457 * 16 15 14 18 18 C 1.40707 * 119.74837 * 0.57536 * 17 16 15 19 19 C 1.41394 * 120.24760 * 179.68181 * 18 17 16 20 20 H 1.08003 * 120.00317 * 204.40218 * 19 18 17 21 21 C 1.39945 * 120.00066 * 24.40189 * 19 18 17 22 22 N 1.30828 * 119.99948 * 17.85159 * 21 19 18 23 23 Si 1.86798 * 120.00161 * 197.84674 * 21 19 18 24 24 H 1.48504 * 109.47057 * 90.00291 * 23 21 19 25 25 H 1.48508 * 109.47341 * 210.00123 * 23 21 19 26 26 H 1.48493 * 109.47326 * 330.00518 * 23 21 19 27 27 C 1.40716 * 119.51171 * 359.70050 * 18 17 16 28 28 C 1.37619 * 119.74260 * 0.02562 * 27 18 17 29 29 H 1.09002 * 109.46818 * 300.00238 * 1 2 3 30 30 H 1.09002 * 109.46947 * 59.99670 * 1 2 3 31 31 H 1.08997 * 109.47540 * 180.02562 * 1 2 3 32 32 H 1.07995 * 120.45011 * 359.95337 * 4 3 2 33 33 H 1.08006 * 119.58441 * 179.97438 * 5 4 3 34 34 H 1.07996 * 119.59058 * 179.74937 * 7 6 5 35 35 H 1.08998 * 109.46822 * 20.00314 * 9 8 7 36 36 H 1.09002 * 109.46992 * 139.99878 * 9 8 7 37 37 H 0.96999 * 120.00001 * 0.02562 * 10 9 8 38 38 H 0.96993 * 120.00228 * 359.97438 * 13 11 10 39 39 H 1.09002 * 109.46939 * 299.99405 * 14 13 11 40 40 H 1.08994 * 109.46881 * 59.99638 * 14 13 11 41 41 H 1.08000 * 119.88003 * 359.97438 * 16 15 14 42 42 H 1.08008 * 120.12873 * 180.27768 * 17 16 15 43 43 H 0.97000 * 120.00339 * 179.97438 * 22 21 19 44 44 H 1.07998 * 120.13247 * 179.97438 * 27 18 17 45 45 H 1.08001 * 119.87848 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 1.3041 2.3886 0.0006 5 6 1.9679 3.5980 0.0011 6 7 3.2868 3.6456 0.0061 7 6 4.0232 2.5508 0.0005 8 6 3.4346 1.3027 0.0000 9 6 4.2838 0.0577 -0.0010 10 7 4.3603 -0.4801 -1.3617 11 6 5.0711 -1.5989 -1.6050 12 8 5.6493 -2.1618 -0.6955 13 7 5.1419 -2.0934 -2.8567 14 6 5.9142 -3.3100 -3.1212 15 6 5.8322 -3.6482 -4.5876 16 6 4.8184 -4.4744 -5.0473 17 6 4.7305 -4.7853 -6.3850 18 6 5.6817 -4.2709 -7.2853 19 6 5.6054 -4.5889 -8.6609 20 1 6.4930 -4.5478 -9.2747 21 6 4.3796 -4.9569 -9.2270 22 7 3.2624 -4.6796 -8.6053 23 14 4.3386 -5.8440 -10.8704 24 1 4.3911 -7.3106 -10.6427 25 1 3.0850 -5.4991 -11.5880 26 1 5.5069 -5.4278 -11.6869 27 6 6.7098 -3.4378 -6.8064 28 6 6.7748 -3.1357 -5.4654 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 0.2247 2.3566 0.0002 33 1 1.4010 4.5173 0.0011 34 1 5.1001 2.6325 0.0008 35 1 5.2864 0.3015 0.3502 36 1 3.8385 -0.6864 0.6593 37 1 3.8994 -0.0308 -2.0873 38 1 4.6811 -1.6442 -3.5824 39 1 6.9555 -3.1470 -2.8432 40 1 5.5064 -4.1337 -2.5353 41 1 4.0925 -4.8724 -4.3537 42 1 3.9372 -5.4256 -6.7418 43 1 2.4127 -4.9343 -8.9978 44 1 7.4454 -3.0378 -7.4885 45 1 7.5632 -2.4969 -5.0955 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001427620682.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:16 Heat of formation + Delta-G solvation = -17.648590 kcal Electronic energy + Delta-G solvation = -27702.440575 eV Core-core repulsion = 23684.762931 eV Total energy + Delta-G solvation = -4017.677645 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.14862 -39.55944 -38.59458 -37.70941 -35.35155 -34.50775 -33.39247 -31.98643 -31.62199 -30.19304 -29.34471 -28.06167 -27.23378 -25.98233 -23.60225 -23.30721 -22.33377 -21.06632 -20.62474 -20.06906 -18.80371 -18.17904 -17.52630 -17.38598 -16.49042 -16.13110 -15.46628 -15.38333 -15.35460 -15.12228 -14.63231 -14.47183 -14.24808 -13.97637 -13.83931 -13.76358 -13.43228 -13.18823 -12.92560 -12.52601 -12.49543 -12.02825 -12.01803 -11.86566 -11.66765 -11.54223 -11.17307 -11.03923 -10.69432 -10.44951 -10.07176 -9.89462 -9.69643 -9.56537 -9.47264 -9.25236 -9.18083 -9.04152 -8.40375 -7.56379 -7.44533 -6.87069 -4.46308 0.61350 0.92763 2.54067 2.69566 2.95780 2.99242 3.02629 3.04882 3.22344 3.52741 3.55044 3.85258 4.02530 4.21463 4.38258 4.46608 4.53339 4.68480 4.71025 4.76458 4.90962 5.05708 5.14516 5.27709 5.49163 5.61086 5.65658 5.78202 5.84660 5.98454 6.14781 6.26318 6.33805 6.38012 6.55663 6.74675 6.87635 6.95873 6.98536 7.18609 7.23931 7.27957 7.52092 7.61627 7.75734 7.96216 8.03260 8.19918 8.36649 8.54387 8.79162 8.87169 8.92674 10.06937 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014185 B = 0.002035 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.498431 B =13754.639580 C =14537.793340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.299 6.299 3 C 0.186 3.814 4 C -0.266 4.266 5 C 0.141 3.859 6 N -0.510 5.510 7 C 0.154 3.846 8 C -0.192 4.192 9 C 0.197 3.803 10 N -0.746 5.746 11 C 0.701 3.299 12 O -0.602 6.602 13 N -0.734 5.734 14 C 0.203 3.797 15 C -0.243 4.243 16 C -0.081 4.081 17 C -0.170 4.170 18 C 0.116 3.884 19 C -0.458 4.458 20 H 0.079 0.921 21 C 0.075 3.925 22 N -0.789 5.789 23 Si 0.909 3.091 24 H -0.267 1.267 25 H -0.278 1.278 26 H -0.262 1.262 27 C -0.230 4.230 28 C -0.069 4.069 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.140 0.860 33 H 0.159 0.841 34 H 0.165 0.835 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.394 0.606 38 H 0.396 0.604 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.088 0.912 42 H 0.118 0.882 43 H 0.282 0.718 44 H 0.093 0.907 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.952 12.360 14.183 20.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.209 6.209 3 C 0.131 3.869 4 C -0.287 4.287 5 C -0.016 4.016 6 N -0.222 5.222 7 C -0.003 4.003 8 C -0.196 4.196 9 C 0.073 3.927 10 N -0.402 5.402 11 C 0.401 3.599 12 O -0.481 6.481 13 N -0.388 5.388 14 C 0.081 3.919 15 C -0.245 4.245 16 C -0.100 4.100 17 C -0.189 4.189 18 C 0.113 3.887 19 C -0.487 4.487 20 H 0.097 0.903 21 C -0.143 4.143 22 N -0.413 5.413 23 Si 0.734 3.266 24 H -0.192 1.192 25 H -0.203 1.203 26 H -0.185 1.185 27 C -0.249 4.249 28 C -0.088 4.088 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.124 0.876 32 H 0.158 0.842 33 H 0.176 0.824 34 H 0.182 0.818 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.227 0.773 38 H 0.230 0.770 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.106 0.894 42 H 0.136 0.864 43 H 0.092 0.908 44 H 0.111 0.889 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.190 12.362 15.012 20.734 hybrid contribution -1.470 -0.579 -1.500 2.179 sum -8.660 11.783 13.512 19.910 Atomic orbital electron populations 1.23195 0.77525 1.04784 1.01588 1.86174 1.21991 1.25782 1.86988 1.19263 0.91911 0.84904 0.90800 1.22254 1.01711 0.93136 1.11607 1.22631 0.90342 0.97046 0.91564 1.67804 1.07071 1.31908 1.15376 1.22702 1.00538 0.85950 0.91083 1.20421 0.91224 0.97512 1.10413 1.19640 0.98220 0.90883 0.83998 1.45125 1.56246 1.28686 1.10152 1.16056 0.79737 0.80335 0.83803 1.90882 1.51264 1.61851 1.44129 1.45710 1.55637 1.30115 1.07387 1.19799 0.94145 0.84357 0.93601 1.19019 1.02252 1.10286 0.92904 1.20569 0.96201 0.97710 0.95509 1.21312 1.02352 1.03825 0.91413 1.17671 0.90132 0.87642 0.93232 1.19665 0.94897 1.39791 0.94396 0.90269 1.25948 0.95092 0.93575 0.99688 1.69822 0.98783 1.34188 1.38545 0.86290 0.78708 0.80410 0.81224 1.19171 1.20271 1.18540 1.20980 1.03753 1.05725 0.94481 1.20419 0.96812 0.98100 0.93501 0.92327 0.92139 0.87578 0.84183 0.82410 0.81765 0.90624 0.90579 0.77270 0.77030 0.92630 0.92630 0.89398 0.86399 0.90753 0.88917 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.84 101.05 0.99 1.13 16 2 O -0.30 -2.90 9.86 -18.90 -0.19 -3.08 16 3 C 0.19 1.75 6.70 -38.82 -0.26 1.49 16 4 C -0.27 -2.00 9.11 -39.30 -0.36 -2.36 16 5 C 0.14 1.11 11.17 -17.59 -0.20 0.91 16 6 N -0.51 -5.03 10.36 -13.33 -0.14 -5.17 16 7 C 0.15 1.42 10.82 -17.59 -0.19 1.23 16 8 C -0.19 -1.88 5.28 -104.34 -0.55 -2.43 16 9 C 0.20 2.25 5.53 -5.19 -0.03 2.22 16 10 N -0.75 -9.58 5.55 -66.41 -0.37 -9.95 16 11 C 0.70 11.68 8.57 -86.92 -0.74 10.94 16 12 O -0.60 -12.18 16.34 5.29 0.09 -12.09 16 13 N -0.73 -12.18 5.55 -66.41 -0.37 -12.55 16 14 C 0.20 3.77 5.79 -5.19 -0.03 3.74 16 15 C -0.24 -5.05 5.27 -104.33 -0.55 -5.60 16 16 C -0.08 -1.81 9.67 -39.66 -0.38 -2.19 16 17 C -0.17 -4.24 8.70 -38.88 -0.34 -4.57 16 18 C 0.12 2.98 5.57 -106.83 -0.60 2.38 16 19 C -0.46 -11.76 9.05 -37.74 -0.34 -12.10 16 20 H 0.08 1.96 7.91 -52.48 -0.41 1.54 16 21 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 22 N -0.79 -19.62 10.95 55.55 0.61 -19.01 16 23 Si 0.91 18.06 29.59 -169.99 -5.03 13.03 16 24 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 25 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 26 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 27 C -0.23 -5.43 9.80 -38.87 -0.38 -5.81 16 28 C -0.07 -1.49 9.67 -39.66 -0.38 -1.87 16 29 H 0.06 0.25 7.71 -51.93 -0.40 -0.15 16 30 H 0.06 0.29 7.71 -51.93 -0.40 -0.11 16 31 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.14 0.70 6.47 -52.49 -0.34 0.36 16 33 H 0.16 0.79 8.06 -52.48 -0.42 0.37 16 34 H 0.17 1.22 8.04 -52.49 -0.42 0.79 16 35 H 0.08 0.83 8.02 -51.93 -0.42 0.42 16 36 H 0.08 0.97 7.92 -51.93 -0.41 0.56 16 37 H 0.39 4.43 8.48 -40.82 -0.35 4.09 16 38 H 0.40 6.13 8.48 -40.82 -0.35 5.78 16 39 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 40 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 41 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 42 H 0.12 3.05 6.16 -52.48 -0.32 2.73 16 43 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 44 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 45 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 386.93 15.07 5.83 5.83 Total: -1.00 -30.74 386.93 -9.90 -40.64 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -5.91 Total: 13.49 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -4.43 Total: -11.15 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: -0.27 Total: -46.68 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.10 Total: -15.17 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.74 -9.90 -40.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001427620682.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.995 kcal (2) G-P(sol) polarization free energy of solvation -30.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds