Wall clock time and date at job start Sat Apr 11 2020 06:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35665 * 117.00242 * 2 1 4 4 C 1.39294 * 119.61533 * 179.72982 * 3 2 1 5 5 C 1.38331 * 119.29975 * 179.75563 * 4 3 2 6 6 C 1.38783 * 118.56086 * 0.50831 * 5 4 3 7 7 C 1.39123 * 119.18954 * 359.72998 * 6 5 4 8 8 C 1.48148 * 119.68942 * 179.97438 * 7 6 5 9 9 O 1.21512 * 120.00311 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99986 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00057 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.47191 * 179.97438 * 11 10 8 13 13 C 1.38245 * 120.00079 * 269.72515 * 12 11 10 14 14 C 1.38230 * 120.00162 * 179.76730 * 13 12 11 15 15 C 1.38240 * 119.99960 * 0.48391 * 14 13 12 16 16 C 1.50697 * 120.00167 * 179.77352 * 15 14 13 17 17 N 1.46506 * 109.46831 * 270.02048 * 16 15 14 18 18 C 1.36936 * 119.99551 * 179.97438 * 17 16 15 19 19 H 1.07993 * 120.00625 * 0.02562 * 18 17 16 20 20 C 1.38822 * 119.99365 * 179.97438 * 18 17 16 21 21 N 1.31616 * 120.00047 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99709 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47182 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46995 * 119.99960 * 22 20 18 25 25 H 1.48493 * 109.46916 * 240.00016 * 22 20 18 26 26 C 1.38233 * 120.00148 * 359.78678 * 15 14 13 27 27 C 1.38241 * 120.00201 * 89.99665 * 12 11 10 28 28 N 1.31892 * 119.61554 * 0.02562 * 3 2 1 29 29 H 1.08998 * 109.46864 * 300.00238 * 1 2 3 30 30 H 1.08999 * 109.46969 * 59.99619 * 1 2 3 31 31 H 1.08996 * 109.47087 * 179.97438 * 1 2 3 32 32 H 1.08000 * 120.34714 * 359.97438 * 4 3 2 33 33 H 1.08005 * 120.71561 * 180.21954 * 5 4 3 34 34 H 1.08004 * 120.40463 * 179.75250 * 6 5 4 35 35 H 0.97007 * 119.99895 * 359.97438 * 10 8 7 36 36 H 1.09007 * 109.46833 * 299.99365 * 11 10 8 37 37 H 1.08995 * 109.47382 * 59.99648 * 11 10 8 38 38 H 1.07996 * 119.99597 * 359.97438 * 13 12 11 39 39 H 1.08000 * 119.99927 * 180.25055 * 14 13 12 40 40 H 1.09007 * 109.47043 * 30.01363 * 16 15 14 41 41 H 1.08995 * 109.47452 * 150.01818 * 16 15 14 42 42 H 0.96997 * 119.99902 * 359.97438 * 17 16 15 43 43 H 0.97000 * 119.99697 * 179.97438 * 21 20 18 44 44 H 1.07997 * 120.00221 * 179.97438 * 26 15 14 45 45 H 1.07988 * 120.00155 * 0.02562 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4365 1.2723 0.0057 5 6 4.0578 2.5082 0.0005 6 6 3.2667 3.6485 0.0006 7 6 1.8820 3.5137 0.0001 8 6 1.0270 4.7235 0.0007 9 8 1.5356 5.8270 0.0011 10 7 -0.3151 4.6001 0.0007 11 6 -1.1607 5.7965 0.0007 12 6 -2.6109 5.3867 0.0001 13 6 -3.2772 5.2045 -1.1974 14 6 -4.6061 4.8240 -1.1980 15 6 -5.2715 4.6352 -0.0011 16 6 -6.7217 4.2253 -0.0017 17 7 -7.5673 5.4217 -0.0016 18 6 -8.9309 5.2962 -0.0027 19 1 -9.3830 4.3154 -0.0031 20 6 -9.7321 6.4298 -0.0021 21 7 -9.1811 7.6251 -0.0011 22 14 -11.5923 6.2588 -0.0028 23 1 -11.9570 4.8193 -0.0033 24 1 -12.1497 6.9096 1.2100 25 1 -12.1489 6.9114 -1.2149 26 6 -4.6069 4.8227 1.1964 27 6 -3.2764 5.1983 1.1970 28 7 1.3193 2.3101 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 4.0241 0.3661 0.0105 33 1 5.1352 2.5841 0.0012 34 1 3.7205 4.6286 0.0006 35 1 -0.7212 3.7192 -0.0001 36 1 -0.9508 6.3897 0.8908 37 1 -0.9508 6.3898 -0.8892 38 1 -2.7585 5.3564 -2.1324 39 1 -5.1255 4.6778 -2.1335 40 1 -6.9313 3.6323 -0.8920 41 1 -6.9319 3.6317 0.8880 42 1 -7.1612 6.3025 -0.0009 43 1 -9.7410 8.4172 -0.0010 44 1 -5.1268 4.6757 2.1314 45 1 -2.7573 5.3452 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568121358.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:51 Heat of formation + Delta-G solvation = -20.102458 kcal Electronic energy + Delta-G solvation = -27501.391952 eV Core-core repulsion = 23483.607900 eV Total energy + Delta-G solvation = -4017.784052 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.93613 -40.81215 -40.15450 -38.67241 -36.97970 -35.86081 -34.01937 -33.46709 -32.07484 -31.87058 -31.60264 -28.74424 -28.18869 -26.39506 -25.18144 -24.06460 -23.84827 -23.64558 -21.95737 -21.71710 -19.76547 -19.34031 -18.82827 -17.51041 -17.15394 -17.03124 -16.87071 -16.85443 -16.76766 -16.42041 -16.00509 -15.94358 -15.25767 -15.19275 -15.14841 -14.85076 -14.46528 -14.35803 -14.26997 -13.99171 -13.72222 -13.41472 -13.23145 -13.12111 -13.00082 -12.80812 -12.70577 -12.19086 -12.15672 -11.98403 -11.93150 -11.75487 -11.70411 -11.03166 -11.00876 -10.77535 -10.25608 -9.83684 -9.66864 -9.62633 -9.04487 -7.96909 -5.27284 -0.44262 0.21465 0.21810 0.49036 1.47062 1.48032 1.58353 1.62440 1.98622 2.09362 2.54113 2.75884 2.80822 3.00704 3.36370 3.60652 3.82031 3.87500 3.91795 4.02466 4.02847 4.11578 4.23270 4.25157 4.26442 4.43429 4.43615 4.46685 4.54495 4.64119 4.67513 4.79612 4.87990 4.88354 4.92571 5.05429 5.10637 5.18167 5.23477 5.33015 5.43738 5.47040 5.57605 5.79516 6.04068 6.09180 6.23904 6.30113 6.61649 7.01355 7.30531 8.03391 8.28518 9.26545 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020907 B = 0.001861 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.968408 B =15041.463999 C =16065.328276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.314 6.314 3 C 0.301 3.699 4 C -0.159 4.159 5 C -0.035 4.035 6 C -0.149 4.149 7 C 0.094 3.906 8 C 0.568 3.432 9 O -0.562 6.562 10 N -0.696 5.696 11 C 0.168 3.832 12 C -0.112 4.112 13 C -0.098 4.098 14 C -0.115 4.115 15 C -0.085 4.085 16 C 0.186 3.814 17 N -0.739 5.739 18 C -0.247 4.247 19 H 0.079 0.921 20 C -0.076 4.076 21 N -0.969 5.969 22 Si 0.977 3.023 23 H -0.264 1.264 24 H -0.293 1.293 25 H -0.293 1.293 26 C -0.115 4.115 27 C -0.098 4.098 28 N -0.530 5.530 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.120 0.880 32 H 0.174 0.826 33 H 0.190 0.810 34 H 0.155 0.845 35 H 0.415 0.585 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.141 0.859 39 H 0.123 0.877 40 H 0.031 0.969 41 H 0.031 0.969 42 H 0.373 0.627 43 H 0.252 0.748 44 H 0.123 0.877 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.085 -15.188 0.007 33.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.221 6.221 3 C 0.119 3.881 4 C -0.179 4.179 5 C -0.060 4.060 6 C -0.171 4.171 7 C -0.041 4.041 8 C 0.354 3.646 9 O -0.440 6.440 10 N -0.347 5.347 11 C 0.046 3.954 12 C -0.112 4.112 13 C -0.116 4.116 14 C -0.134 4.134 15 C -0.086 4.086 16 C 0.060 3.940 17 N -0.382 5.382 18 C -0.379 4.379 19 H 0.097 0.903 20 C -0.268 4.268 21 N -0.620 5.620 22 Si 0.806 3.194 23 H -0.188 1.188 24 H -0.220 1.220 25 H -0.220 1.220 26 C -0.134 4.134 27 C -0.116 4.116 28 N -0.258 5.258 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.139 0.861 32 H 0.191 0.809 33 H 0.207 0.793 34 H 0.173 0.827 35 H 0.252 0.748 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.159 0.841 39 H 0.141 0.859 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.205 0.795 43 H 0.060 0.940 44 H 0.141 0.859 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 29.418 -14.828 0.009 32.944 hybrid contribution -1.055 0.366 -0.001 1.117 sum 28.363 -14.462 0.008 31.837 Atomic orbital electron populations 1.23055 0.75967 1.04743 1.02261 1.86251 1.24090 1.23942 1.87833 1.20169 0.90520 0.84238 0.93187 1.21740 0.91217 1.01446 1.03544 1.21905 1.02696 0.89385 0.92025 1.22213 0.92413 1.02147 1.00306 1.20640 0.92826 0.89652 1.01030 1.18141 0.82473 0.87651 0.76335 1.90781 1.74474 1.27038 1.51751 1.45921 1.05100 1.10982 1.72694 1.20187 0.84803 0.86862 1.03565 1.19777 0.95153 1.02817 0.93470 1.21195 0.93880 0.98202 0.98336 1.21168 0.94942 0.99634 0.97606 1.20173 0.95273 0.98959 0.94201 1.19766 0.86204 0.89393 0.98638 1.42549 1.02447 1.03743 1.89447 1.19714 0.83710 0.93025 1.41445 0.90299 1.25633 1.02726 0.94975 1.03514 1.69844 1.35472 0.97345 1.59316 0.85018 0.79902 0.77817 0.76665 1.18841 1.22002 1.21990 1.21169 0.94930 0.99658 0.97599 1.21195 0.93859 0.98213 0.98341 1.67017 1.41785 0.98426 1.18532 0.92512 0.92519 0.86148 0.80875 0.79260 0.82746 0.74757 0.90095 0.90103 0.84128 0.85942 0.95114 0.95117 0.79500 0.93963 0.85943 0.84129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.38 113.37 1.18 1.61 16 2 O -0.31 -5.01 10.48 -89.81 -0.94 -5.95 16 3 C 0.30 4.94 7.49 84.94 0.64 5.57 16 4 C -0.16 -1.66 10.05 22.55 0.23 -1.43 16 5 C -0.04 -0.30 10.16 22.42 0.23 -0.07 16 6 C -0.15 -2.17 9.63 22.61 0.22 -1.96 16 7 C 0.09 1.84 6.75 41.83 0.28 2.12 16 8 C 0.57 13.09 7.81 86.88 0.68 13.77 16 9 O -0.56 -15.83 16.32 -3.75 -0.06 -15.89 16 10 N -0.70 -14.31 5.54 -469.42 -2.60 -16.91 16 11 C 0.17 3.55 5.80 85.63 0.50 4.04 16 12 C -0.11 -2.62 5.25 -19.86 -0.10 -2.72 16 13 C -0.10 -2.45 9.70 22.27 0.22 -2.23 16 14 C -0.11 -3.50 9.70 22.27 0.22 -3.28 16 15 C -0.09 -2.92 5.25 -19.87 -0.10 -3.03 16 16 C 0.19 7.59 6.38 85.63 0.55 8.13 16 17 N -0.74 -38.39 5.59 -347.16 -1.94 -40.33 16 18 C -0.25 -13.95 9.99 84.04 0.84 -13.12 16 19 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 20 C -0.08 -4.42 5.50 84.87 0.47 -3.96 16 21 N -0.97 -60.15 13.06 21.65 0.28 -59.87 16 22 Si 0.98 46.32 29.55 68.60 2.03 48.35 16 23 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 24 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 25 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 26 C -0.11 -3.50 9.70 22.27 0.22 -3.28 16 27 C -0.10 -2.45 9.70 22.27 0.22 -2.23 16 28 N -0.53 -10.02 8.39 -298.21 -2.50 -12.53 16 29 H 0.06 0.77 8.10 -2.39 -0.02 0.75 16 30 H 0.06 0.77 8.10 -2.39 -0.02 0.75 16 31 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 33 H 0.19 0.06 8.06 -2.91 -0.02 0.03 16 34 H 0.15 2.11 7.63 -2.91 -0.02 2.09 16 35 H 0.42 7.97 7.79 -92.70 -0.72 7.25 16 36 H 0.08 1.71 8.09 -2.38 -0.02 1.69 16 37 H 0.08 1.71 8.08 -2.39 -0.02 1.69 16 38 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 39 H 0.12 3.68 8.06 -2.91 -0.02 3.66 16 40 H 0.03 1.24 8.09 -2.38 -0.02 1.22 16 41 H 0.03 1.24 8.08 -2.39 -0.02 1.22 16 42 H 0.37 20.92 7.66 -92.71 -0.71 20.21 16 43 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 44 H 0.12 3.68 8.06 -2.91 -0.02 3.66 16 45 H 0.14 2.89 8.06 -2.92 -0.02 2.86 16 Total: -1.00 -72.56 393.73 0.31 -72.25 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: -0.40 Total: 32.92 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 6.45 Total: -2.05 kcal Atomic # 7 Polarization: -122.87 SS G_CDS: -6.76 Total: -129.63 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -1.00 Total: -21.84 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -72.56 0.31 -72.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568121358.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.149 kcal (2) G-P(sol) polarization free energy of solvation -72.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds