Wall clock time and date at job start Sat Apr 11 2020 06:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35641 * 117.00001 * 2 1 4 4 C 1.39345 * 120.54146 * 0.25259 * 3 2 1 5 5 C 1.38308 * 118.43761 * 180.28337 * 4 3 2 6 6 C 1.38762 * 119.44496 * 359.46530 * 5 4 3 7 7 N 1.31371 * 121.07125 * 0.27672 * 6 5 4 8 8 C 1.32868 * 121.69259 * 359.97438 * 7 6 5 9 9 C 1.47824 * 119.78256 * 180.02562 * 8 7 6 10 10 O 1.21563 * 120.00194 * 180.02562 * 9 8 7 11 11 N 1.34780 * 120.00330 * 359.97438 * 9 8 7 12 12 C 1.46498 * 120.00391 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47103 * 179.97438 * 12 11 9 14 14 H 1.09001 * 109.46890 * 65.00302 * 13 12 11 15 15 N 1.46496 * 109.46999 * 304.99846 * 13 12 11 16 16 C 1.36934 * 120.00002 * 302.87038 * 15 13 12 17 17 H 1.07993 * 120.00310 * 5.10197 * 16 15 13 18 18 C 1.38816 * 119.99410 * 185.10136 * 16 15 13 19 19 N 1.31618 * 120.00265 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99471 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47332 * 90.00091 * 20 18 16 22 22 H 1.48504 * 109.46721 * 209.99502 * 20 18 16 23 23 H 1.48500 * 109.47349 * 329.99627 * 20 18 16 24 24 C 1.50704 * 109.46951 * 184.99917 * 13 12 11 25 25 C 1.38234 * 119.99870 * 333.20978 * 24 13 12 26 26 C 1.38238 * 120.00071 * 179.78657 * 25 24 13 27 27 C 1.38239 * 119.99717 * 0.44375 * 26 25 24 28 28 C 1.38236 * 119.99776 * 359.80939 * 27 26 25 29 29 C 1.38230 * 120.00337 * 359.97438 * 28 27 26 30 30 H 1.09006 * 109.46819 * 300.00332 * 1 2 3 31 31 H 1.09004 * 109.47325 * 59.99952 * 1 2 3 32 32 H 1.09000 * 109.46976 * 180.02562 * 1 2 3 33 33 H 1.07996 * 120.78612 * 0.02889 * 4 3 2 34 34 H 1.08005 * 120.27440 * 179.74128 * 5 4 3 35 35 H 1.08000 * 119.46645 * 180.25566 * 6 5 4 36 36 H 0.97003 * 119.99803 * 0.02562 * 11 9 8 37 37 H 1.09008 * 109.47124 * 300.00213 * 12 11 9 38 38 H 1.08999 * 109.47204 * 59.99586 * 12 11 9 39 39 H 0.97003 * 119.99480 * 122.87523 * 15 13 12 40 40 H 0.97005 * 119.99621 * 180.02562 * 19 18 16 41 41 H 1.08001 * 120.00603 * 359.97438 * 25 24 13 42 42 H 1.08002 * 120.00508 * 180.27219 * 26 25 24 43 43 H 1.07999 * 120.00212 * 179.83105 * 27 26 25 44 44 H 1.08003 * 119.99637 * 180.02562 * 28 27 26 45 45 H 1.08001 * 120.00420 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2970 2.3843 0.0053 5 6 1.9697 3.5928 -0.0009 6 6 3.3573 3.6011 -0.0009 7 7 4.0420 2.4799 -0.0005 8 6 3.4410 1.2950 0.0004 9 6 4.2531 0.0598 0.0014 10 8 3.7074 -1.0265 0.0018 11 7 5.5986 0.1379 0.0009 12 6 6.4035 -1.0862 0.0014 13 6 7.8890 -0.7199 0.0000 14 1 8.1384 -0.2105 0.9308 15 7 8.1725 0.1652 -1.1324 16 6 7.8813 -0.2398 -2.4077 17 1 7.3678 -1.1753 -2.5731 18 6 8.2460 0.5524 -3.4877 19 7 8.8714 1.6928 -3.2860 20 14 7.8481 0.0003 -5.2273 21 1 6.5118 0.5175 -5.6174 22 1 8.8750 0.5281 -6.1612 23 1 7.8411 -1.4835 -5.2864 24 6 8.7155 -1.9740 -0.1234 25 6 8.2129 -3.1801 0.3277 26 6 8.9692 -4.3313 0.2105 27 6 10.2319 -4.2747 -0.3494 28 6 10.7365 -3.0676 -0.7957 29 6 9.9784 -1.9173 -0.6826 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 0.2175 2.3528 0.0099 34 1 1.4195 4.5222 -0.0013 35 1 3.8829 4.5446 -0.0016 36 1 6.0341 1.0046 0.0002 37 1 6.1740 -1.6717 0.8918 38 1 6.1734 -1.6727 -0.8881 39 1 8.5667 1.0381 -0.9788 40 1 9.1259 2.2464 -4.0407 41 1 7.2281 -3.2238 0.7689 42 1 8.5749 -5.2745 0.5589 43 1 10.8239 -5.1735 -0.4385 44 1 11.7228 -3.0234 -1.2335 45 1 10.3725 -0.9742 -1.0317 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664599944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:17 Heat of formation + Delta-G solvation = 14.807770 kcal Electronic energy + Delta-G solvation = -29277.212534 eV Core-core repulsion = 25260.942303 eV Total energy + Delta-G solvation = -4016.270231 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -40.85262 -39.11006 -38.41970 -38.10622 -35.76285 -33.37457 -32.45682 -31.72668 -30.82323 -30.35869 -29.42021 -27.69940 -27.10794 -24.83914 -23.91658 -22.90515 -22.30884 -21.66479 -20.24479 -19.75168 -18.32800 -17.54272 -17.36905 -17.01668 -16.30611 -16.02881 -15.30396 -15.15616 -14.99465 -14.60830 -14.41161 -14.31425 -14.09313 -13.89684 -13.77054 -13.35599 -13.17560 -12.89327 -12.72424 -12.57756 -12.46748 -12.03038 -11.81271 -11.62603 -11.59741 -11.17308 -10.86680 -10.73629 -10.52169 -10.33928 -10.00175 -9.96090 -9.91230 -9.66090 -9.35859 -8.96576 -8.56425 -8.30665 -8.23125 -8.04364 -7.04201 -5.77508 -3.08151 0.69620 1.16699 1.96892 2.05582 3.06714 3.08766 3.45116 3.51087 3.53377 3.60896 4.02870 4.35353 4.41437 4.48446 4.60567 4.65664 4.87490 4.94641 4.96303 5.12208 5.30616 5.34894 5.42995 5.50003 5.53253 5.57414 5.69903 5.77077 5.80701 5.84128 5.93082 6.04099 6.09701 6.26853 6.28915 6.41374 6.60444 6.71342 6.72818 7.00164 7.10824 7.11677 7.18084 7.39746 7.65546 7.75867 7.77984 8.23455 8.38948 8.80015 9.52632 10.00511 10.37677 11.43993 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010222 B = 0.003643 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.549157 B = 7684.100626 C = 9124.786084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.271 6.271 3 C 0.131 3.869 4 C -0.179 4.179 5 C -0.114 4.114 6 C 0.059 3.941 7 N -0.411 5.411 8 C 0.055 3.945 9 C 0.565 3.435 10 O -0.533 6.533 11 N -0.683 5.683 12 C 0.114 3.886 13 C 0.197 3.803 14 H 0.074 0.926 15 N -0.712 5.712 16 C -0.228 4.228 17 H 0.069 0.931 18 C -0.005 4.005 19 N -0.929 5.929 20 Si 0.898 3.102 21 H -0.291 1.291 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.076 4.076 25 C -0.127 4.127 26 C -0.132 4.132 27 C -0.135 4.135 28 C -0.131 4.131 29 C -0.073 4.073 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.104 0.896 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.165 0.835 36 H 0.413 0.587 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.388 0.612 40 H 0.254 0.746 41 H 0.118 0.882 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.112 0.888 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.777 0.549 10.389 15.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.181 6.181 3 C 0.080 3.920 4 C -0.205 4.205 5 C -0.134 4.134 6 C -0.102 4.102 7 N -0.123 5.123 8 C -0.085 4.085 9 C 0.349 3.651 10 O -0.410 6.410 11 N -0.333 5.333 12 C -0.012 4.012 13 C 0.085 3.915 14 H 0.092 0.908 15 N -0.352 5.352 16 C -0.359 4.359 17 H 0.087 0.913 18 C -0.201 4.201 19 N -0.577 5.577 20 Si 0.729 3.271 21 H -0.219 1.219 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.079 4.079 25 C -0.146 4.146 26 C -0.151 4.151 27 C -0.153 4.153 28 C -0.149 4.149 29 C -0.092 4.092 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.122 0.878 33 H 0.161 0.839 34 H 0.158 0.842 35 H 0.182 0.818 36 H 0.250 0.750 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.222 0.778 40 H 0.064 0.936 41 H 0.136 0.864 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.130 0.870 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.173 -0.530 10.206 15.141 hybrid contribution -1.136 0.616 -1.306 1.837 sum -12.309 0.086 8.899 15.189 Atomic orbital electron populations 1.23190 0.78950 1.04494 1.00987 1.86445 1.20539 1.24579 1.86512 1.20076 0.92433 0.85655 0.93804 1.21700 1.00843 0.91906 1.06093 1.22177 0.95836 0.98257 0.97108 1.22740 0.91255 0.96583 0.99579 1.67708 1.39733 0.97341 1.07493 1.20878 0.88522 0.93198 1.05865 1.17540 0.82586 0.86969 0.78003 1.90788 1.71977 1.27516 1.50686 1.45562 1.04817 1.11202 1.71699 1.21875 0.92002 0.86217 1.01076 1.19358 0.90394 0.89469 0.92271 0.90827 1.42376 1.74587 1.16991 1.01238 1.19040 1.30244 1.03845 0.82778 0.91335 1.24652 1.00779 0.97154 0.97493 1.69646 1.45266 1.12893 1.29917 0.86328 0.77370 0.78032 0.85368 1.21892 1.21833 1.20728 1.20689 0.95113 0.95463 0.96634 1.21134 0.99672 0.92594 1.01157 1.20964 0.95026 0.97827 1.01245 1.20977 0.96212 0.97417 1.00738 1.21116 0.99864 0.93106 1.00832 1.21087 0.93591 0.98725 0.95750 0.92709 0.92640 0.87783 0.83915 0.84176 0.81812 0.74999 0.92466 0.91190 0.77798 0.93606 0.86434 0.87121 0.87276 0.86971 0.85070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.83 101.05 0.99 1.17 16 2 O -0.27 -4.08 8.56 -40.57 -0.35 -4.43 16 3 C 0.13 1.95 6.71 -38.55 -0.26 1.69 16 4 C -0.18 -1.93 9.13 -39.14 -0.36 -2.29 16 5 C -0.11 -1.11 10.10 -39.36 -0.40 -1.51 16 6 C 0.06 0.71 11.17 -17.55 -0.20 0.52 16 7 N -0.41 -6.60 9.54 -9.71 -0.09 -6.69 16 8 C 0.05 0.95 6.76 -82.88 -0.56 0.39 16 9 C 0.57 11.24 7.80 -12.34 -0.10 11.15 16 10 O -0.53 -11.72 15.14 -16.64 -0.25 -11.97 16 11 N -0.68 -13.14 5.38 -61.25 -0.33 -13.47 16 12 C 0.11 2.17 3.91 -4.04 -0.02 2.15 16 13 C 0.20 3.71 3.26 -69.08 -0.22 3.48 16 14 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 15 N -0.71 -16.12 3.84 -54.55 -0.21 -16.33 16 16 C -0.23 -5.96 8.54 -15.06 -0.13 -6.09 16 17 H 0.07 1.87 6.99 -52.49 -0.37 1.50 16 18 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 19 N -0.93 -26.70 13.06 55.49 0.72 -25.97 16 20 Si 0.90 22.69 29.55 -169.99 -5.02 17.66 16 21 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 22 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 23 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 24 C -0.08 -1.42 5.16 -104.62 -0.54 -1.96 16 25 C -0.13 -2.14 9.14 -39.58 -0.36 -2.51 16 26 C -0.13 -2.06 10.05 -39.58 -0.40 -2.46 16 27 C -0.14 -2.10 10.05 -39.58 -0.40 -2.50 16 28 C -0.13 -2.23 10.05 -39.58 -0.40 -2.63 16 29 C -0.07 -1.41 8.95 -39.59 -0.35 -1.76 16 30 H 0.05 0.38 7.69 -51.93 -0.40 -0.02 16 31 H 0.06 0.42 7.71 -51.93 -0.40 0.02 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.14 1.06 6.46 -52.49 -0.34 0.72 16 34 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 35 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.41 7.94 7.46 -40.82 -0.30 7.63 16 37 H 0.06 1.00 6.86 -51.92 -0.36 0.64 16 38 H 0.07 1.53 7.21 -51.93 -0.37 1.15 16 39 H 0.39 9.31 8.04 -40.82 -0.33 8.98 16 40 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.12 1.83 6.22 -52.49 -0.33 1.50 16 42 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 43 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 44 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 45 H 0.13 2.75 7.51 -52.49 -0.39 2.36 16 LS Contribution 379.52 15.07 5.72 5.72 Total: -1.00 -33.01 379.52 -9.28 -42.29 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: -5.68 Total: 16.56 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -3.79 Total: -3.37 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: 0.09 Total: -62.47 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.60 Total: -16.40 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.01 -9.28 -42.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664599944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.100 kcal (2) G-P(sol) polarization free energy of solvation -33.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds