Wall clock time and date at job start Sat Apr 11 2020 06:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35648 * 116.99936 * 2 1 4 4 C 1.39343 * 120.53952 * 359.97438 * 3 2 1 5 5 C 1.38297 * 118.44056 * 180.02562 * 4 3 2 6 6 C 1.38767 * 119.44522 * 359.97438 * 5 4 3 7 7 N 1.31374 * 121.06452 * 0.02562 * 6 5 4 8 8 C 1.32860 * 121.69792 * 359.97438 * 7 6 5 9 9 C 1.47836 * 119.78346 * 180.02562 * 8 7 6 10 10 O 1.21547 * 119.99873 * 180.02562 * 9 8 7 11 11 N 1.34778 * 120.00087 * 0.02562 * 9 8 7 12 12 C 1.46494 * 120.00202 * 180.02562 * 11 9 8 13 13 C 1.52994 * 109.47556 * 180.02562 * 12 11 9 14 14 H 1.09008 * 109.47028 * 295.00315 * 13 12 11 15 15 N 1.46504 * 109.47333 * 54.99761 * 13 12 11 16 16 C 1.36936 * 120.00132 * 205.00722 * 15 13 12 17 17 H 1.07995 * 119.99959 * 359.97438 * 16 15 13 18 18 C 1.38815 * 119.99970 * 180.02562 * 16 15 13 19 19 N 1.31619 * 119.99883 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00193 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47129 * 89.99214 * 20 18 16 22 22 H 1.48492 * 109.47206 * 209.99796 * 20 18 16 23 23 H 1.48508 * 109.46728 * 329.99240 * 20 18 16 24 24 C 1.50703 * 109.47358 * 174.99822 * 13 12 11 25 25 C 1.38228 * 119.99890 * 279.72425 * 24 13 12 26 26 C 1.38234 * 119.99552 * 179.79010 * 25 24 13 27 27 C 1.38234 * 120.00225 * 0.43686 * 26 25 24 28 28 C 1.38233 * 119.99847 * 359.82035 * 27 26 25 29 29 C 1.38230 * 120.00063 * 359.97065 * 28 27 26 30 30 H 1.08998 * 109.46841 * 60.00779 * 1 2 3 31 31 H 1.09009 * 109.46981 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47431 * 300.00487 * 1 2 3 33 33 H 1.08004 * 120.78012 * 359.97438 * 4 3 2 34 34 H 1.08002 * 120.28238 * 179.97438 * 5 4 3 35 35 H 1.08003 * 119.47003 * 180.02562 * 6 5 4 36 36 H 0.97002 * 119.99559 * 0.02562 * 11 9 8 37 37 H 1.09004 * 109.46967 * 300.00257 * 12 11 9 38 38 H 1.09003 * 109.47306 * 60.00152 * 12 11 9 39 39 H 0.97002 * 119.99497 * 25.00161 * 15 13 12 40 40 H 0.96999 * 120.00130 * 180.02562 * 19 18 16 41 41 H 1.07994 * 120.00339 * 359.97438 * 25 24 13 42 42 H 1.08008 * 120.00081 * 180.27938 * 26 25 24 43 43 H 1.08005 * 120.00066 * 179.83713 * 27 26 25 44 44 H 1.08002 * 120.00175 * 179.97438 * 28 27 26 45 45 H 1.07999 * 120.00011 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2969 2.3844 -0.0005 5 6 1.9695 3.5928 -0.0011 6 6 3.3571 3.6012 -0.0005 7 7 4.0418 2.4800 0.0000 8 6 3.4409 1.2950 0.0005 9 6 4.2531 0.0598 0.0017 10 8 3.7075 -1.0263 0.0017 11 7 5.5986 0.1379 0.0027 12 6 6.4035 -1.0861 0.0033 13 6 7.8889 -0.7198 0.0051 14 1 8.1388 -0.2108 -0.9259 15 7 8.1722 0.1660 1.1371 16 6 9.2398 1.0220 1.0863 17 1 9.8734 1.0437 0.2120 18 6 9.5085 1.8609 2.1591 19 7 8.7366 1.8340 3.2249 20 14 10.9654 3.0280 2.0902 21 1 10.5348 4.3232 1.5052 22 1 11.4847 3.2531 3.4631 23 1 12.0349 2.4353 1.2475 24 6 8.7154 -1.9738 0.1296 25 6 8.8995 -2.5602 1.3677 26 6 9.6540 -3.7129 1.4812 27 6 10.2320 -4.2741 0.3578 28 6 10.0523 -3.6846 -0.8795 29 6 9.2942 -2.5344 -0.9937 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 0.2173 2.3527 -0.0014 34 1 1.4194 4.5222 -0.0019 35 1 3.8828 4.5447 -0.0005 36 1 6.0340 1.0048 0.0031 37 1 6.1730 -1.6720 0.8931 38 1 6.1745 -1.6720 -0.8869 39 1 7.6032 0.1463 1.9225 40 1 8.9241 2.4205 3.9744 41 1 8.4514 -2.1195 2.2459 42 1 9.7941 -4.1736 2.4480 43 1 10.8237 -5.1732 0.4469 44 1 10.5042 -4.1228 -1.7572 45 1 9.1535 -2.0741 -1.9605 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664599945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:25 Heat of formation + Delta-G solvation = 10.376166 kcal Electronic energy + Delta-G solvation = -28935.742715 eV Core-core repulsion = 24919.280315 eV Total energy + Delta-G solvation = -4016.462400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = -0.20 seconds Orbital eigenvalues (eV) -40.89936 -39.10512 -38.49745 -38.16266 -35.77142 -33.48596 -32.50951 -31.77527 -30.85974 -30.35528 -29.48735 -27.81451 -27.30769 -24.75300 -23.51140 -22.95179 -22.55653 -21.86325 -20.33992 -19.89625 -18.39266 -17.66973 -17.27008 -17.02927 -16.28827 -16.07547 -15.38006 -15.29758 -15.08957 -14.64674 -14.52481 -14.38577 -14.11336 -13.91369 -13.63229 -13.51038 -13.10369 -12.87153 -12.76042 -12.68945 -12.58001 -12.22020 -11.88150 -11.66443 -11.63100 -11.04484 -10.89802 -10.76030 -10.65786 -10.39865 -10.08302 -10.01728 -9.94739 -9.72325 -9.44672 -8.99773 -8.64850 -8.40131 -8.33910 -8.12787 -7.04385 -5.78082 -3.08950 0.65444 1.13973 1.92055 1.98587 3.01153 3.02618 3.43428 3.49672 3.50397 3.51576 3.95701 4.30454 4.37127 4.45557 4.57779 4.61066 4.83937 4.91708 4.93176 5.10239 5.27567 5.31894 5.38852 5.44281 5.48123 5.55031 5.63994 5.67944 5.76195 5.81884 5.87317 5.96940 6.10431 6.16232 6.25326 6.35767 6.49535 6.55406 6.70277 6.92599 7.00137 7.07418 7.08797 7.35452 7.58830 7.71323 7.72154 8.13140 8.37724 8.67786 9.50834 10.01263 10.37970 11.43419 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009150 B = 0.003606 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3059.256070 B = 7762.540806 C =10207.702525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.272 6.272 3 C 0.132 3.868 4 C -0.179 4.179 5 C -0.112 4.112 6 C 0.061 3.939 7 N -0.409 5.409 8 C 0.052 3.948 9 C 0.567 3.433 10 O -0.530 6.530 11 N -0.694 5.694 12 C 0.121 3.879 13 C 0.198 3.802 14 H 0.066 0.934 15 N -0.712 5.712 16 C -0.241 4.241 17 H 0.071 0.929 18 C -0.005 4.005 19 N -0.928 5.928 20 Si 0.904 3.096 21 H -0.289 1.289 22 H -0.293 1.293 23 H -0.282 1.282 24 C -0.080 4.080 25 C -0.083 4.083 26 C -0.128 4.128 27 C -0.135 4.135 28 C -0.130 4.130 29 C -0.120 4.120 30 H 0.055 0.945 31 H 0.104 0.896 32 H 0.055 0.945 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.166 0.834 36 H 0.420 0.580 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.387 0.613 40 H 0.255 0.745 41 H 0.123 0.877 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.219 -1.875 -7.979 16.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.182 6.182 3 C 0.081 3.919 4 C -0.205 4.205 5 C -0.132 4.132 6 C -0.100 4.100 7 N -0.121 5.121 8 C -0.088 4.088 9 C 0.351 3.649 10 O -0.407 6.407 11 N -0.347 5.347 12 C -0.004 4.004 13 C 0.087 3.913 14 H 0.084 0.916 15 N -0.353 5.353 16 C -0.372 4.372 17 H 0.089 0.911 18 C -0.202 4.202 19 N -0.575 5.575 20 Si 0.736 3.264 21 H -0.217 1.217 22 H -0.219 1.219 23 H -0.208 1.208 24 C -0.084 4.084 25 C -0.101 4.101 26 C -0.146 4.146 27 C -0.153 4.153 28 C -0.149 4.149 29 C -0.139 4.139 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.074 0.926 33 H 0.161 0.839 34 H 0.159 0.841 35 H 0.183 0.817 36 H 0.259 0.741 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.222 0.778 40 H 0.065 0.935 41 H 0.141 0.859 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.449 -2.759 -7.993 15.886 hybrid contribution -0.182 1.349 0.447 1.433 sum -13.632 -1.410 -7.546 15.645 Atomic orbital electron populations 1.23191 0.78890 1.04511 1.01033 1.86437 1.20596 1.24590 1.86534 1.20065 0.92384 0.85667 0.93787 1.21700 1.00863 0.91883 1.06090 1.22196 0.95828 0.98299 0.96873 1.22766 0.91236 0.96612 0.99394 1.67724 1.39705 0.97333 1.07300 1.20813 0.88463 0.93155 1.06352 1.17581 0.82483 0.87075 0.77763 1.90794 1.71988 1.27527 1.50372 1.45795 1.05021 1.11457 1.72380 1.21608 0.90467 0.86368 1.01920 1.19480 0.89576 0.88404 0.93877 0.91638 1.42436 1.33859 1.42554 1.16463 1.19175 1.04225 1.12813 1.00971 0.91129 1.24698 0.98968 1.00099 0.96384 1.69662 1.39694 1.41658 1.06486 0.86236 0.82403 0.81150 0.76655 1.21668 1.21893 1.20805 1.20992 0.98021 0.96406 0.92931 1.21011 0.97361 0.93916 0.97826 1.21101 0.98689 0.96796 0.98040 1.20969 1.01071 1.00153 0.93132 1.20973 1.00041 0.96735 0.97112 1.21011 0.98522 0.96186 0.98180 0.92684 0.87767 0.92607 0.83868 0.84112 0.81729 0.74150 0.91505 0.91436 0.77814 0.93500 0.85873 0.86902 0.87150 0.87046 0.86746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.83 101.05 0.99 1.15 16 2 O -0.27 -3.89 8.56 -40.60 -0.35 -4.23 16 3 C 0.13 1.87 6.71 -38.56 -0.26 1.62 16 4 C -0.18 -1.85 9.13 -39.15 -0.36 -2.20 16 5 C -0.11 -1.06 10.10 -39.36 -0.40 -1.46 16 6 C 0.06 0.73 11.17 -17.55 -0.20 0.54 16 7 N -0.41 -6.53 9.54 -9.71 -0.09 -6.62 16 8 C 0.05 0.87 6.76 -82.88 -0.56 0.31 16 9 C 0.57 10.77 7.80 -12.33 -0.10 10.68 16 10 O -0.53 -11.09 15.14 -16.63 -0.25 -11.34 16 11 N -0.69 -12.95 5.38 -61.26 -0.33 -13.28 16 12 C 0.12 2.19 5.21 -4.05 -0.02 2.17 16 13 C 0.20 3.83 2.65 -69.08 -0.18 3.65 16 14 H 0.07 1.26 7.94 -51.92 -0.41 0.85 16 15 N -0.71 -16.71 3.79 -54.55 -0.21 -16.92 16 16 C -0.24 -6.36 9.92 -15.06 -0.15 -6.51 16 17 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 18 C 0.00 -0.14 5.50 -17.43 -0.10 -0.23 16 19 N -0.93 -27.06 13.06 55.49 0.72 -26.34 16 20 Si 0.90 22.04 29.55 -169.99 -5.02 17.02 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 C -0.08 -1.49 4.92 -104.62 -0.52 -2.00 16 25 C -0.08 -1.57 9.33 -39.59 -0.37 -1.94 16 26 C -0.13 -2.14 10.05 -39.58 -0.40 -2.54 16 27 C -0.13 -2.05 10.05 -39.58 -0.40 -2.45 16 28 C -0.13 -1.98 10.05 -39.59 -0.40 -2.38 16 29 C -0.12 -1.99 9.67 -39.58 -0.38 -2.38 16 30 H 0.05 0.36 7.70 -51.93 -0.40 -0.04 16 31 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 32 H 0.06 0.38 7.70 -51.93 -0.40 -0.02 16 33 H 0.14 1.00 6.46 -52.48 -0.34 0.66 16 34 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 35 H 0.17 1.57 8.06 -52.48 -0.42 1.14 16 36 H 0.42 8.20 7.46 -40.82 -0.30 7.89 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.39 9.86 7.80 -40.82 -0.32 9.54 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.12 2.51 7.71 -52.49 -0.40 2.10 16 42 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 43 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 44 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 45 H 0.11 1.67 8.04 -52.49 -0.42 1.25 16 LS Contribution 386.83 15.07 5.83 5.83 Total: -1.00 -33.10 386.83 -9.41 -42.51 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: -5.93 Total: 17.35 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -3.78 Total: -3.98 kcal Atomic # 7 Polarization: -63.25 SS G_CDS: 0.10 Total: -63.16 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.60 Total: -15.57 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.10 -9.41 -42.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664599945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.888 kcal (2) G-P(sol) polarization free energy of solvation -33.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.20 seconds