Wall clock time and date at job start Sat Apr 11 2020 06:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35648 * 116.99936 * 2 1 4 4 C 1.39343 * 120.53952 * 359.97438 * 3 2 1 5 5 C 1.38297 * 118.44056 * 180.02562 * 4 3 2 6 6 C 1.38767 * 119.44522 * 359.97438 * 5 4 3 7 7 N 1.31374 * 121.06452 * 0.02562 * 6 5 4 8 8 C 1.32860 * 121.69792 * 359.97438 * 7 6 5 9 9 C 1.47836 * 119.78346 * 180.02562 * 8 7 6 10 10 O 1.21547 * 119.99873 * 180.02562 * 9 8 7 11 11 N 1.34778 * 120.00087 * 0.02562 * 9 8 7 12 12 C 1.46494 * 120.00202 * 180.02562 * 11 9 8 13 13 C 1.52994 * 109.47556 * 180.02562 * 12 11 9 14 14 H 1.09008 * 109.47028 * 295.00315 * 13 12 11 15 15 N 1.46504 * 109.47333 * 54.99761 * 13 12 11 16 16 C 1.36936 * 120.00132 * 205.00722 * 15 13 12 17 17 H 1.07995 * 119.99959 * 359.97438 * 16 15 13 18 18 C 1.38815 * 119.99970 * 180.02562 * 16 15 13 19 19 N 1.31619 * 119.99883 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00193 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47129 * 89.99214 * 20 18 16 22 22 H 1.48492 * 109.47206 * 209.99796 * 20 18 16 23 23 H 1.48508 * 109.46728 * 329.99240 * 20 18 16 24 24 C 1.50703 * 109.47358 * 174.99822 * 13 12 11 25 25 C 1.38228 * 119.99890 * 279.72425 * 24 13 12 26 26 C 1.38234 * 119.99552 * 179.79010 * 25 24 13 27 27 C 1.38234 * 120.00225 * 0.43686 * 26 25 24 28 28 C 1.38233 * 119.99847 * 359.82035 * 27 26 25 29 29 C 1.38230 * 120.00063 * 359.97065 * 28 27 26 30 30 H 1.08998 * 109.46841 * 60.00779 * 1 2 3 31 31 H 1.09009 * 109.46981 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47431 * 300.00487 * 1 2 3 33 33 H 1.08004 * 120.78012 * 359.97438 * 4 3 2 34 34 H 1.08002 * 120.28238 * 179.97438 * 5 4 3 35 35 H 1.08003 * 119.47003 * 180.02562 * 6 5 4 36 36 H 0.97002 * 119.99559 * 0.02562 * 11 9 8 37 37 H 1.09004 * 109.46967 * 300.00257 * 12 11 9 38 38 H 1.09003 * 109.47306 * 60.00152 * 12 11 9 39 39 H 0.97002 * 119.99497 * 25.00161 * 15 13 12 40 40 H 0.96999 * 120.00130 * 180.02562 * 19 18 16 41 41 H 1.07994 * 120.00339 * 359.97438 * 25 24 13 42 42 H 1.08008 * 120.00081 * 180.27938 * 26 25 24 43 43 H 1.08005 * 120.00066 * 179.83713 * 27 26 25 44 44 H 1.08002 * 120.00175 * 179.97438 * 28 27 26 45 45 H 1.07999 * 120.00011 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2969 2.3844 -0.0005 5 6 1.9695 3.5928 -0.0011 6 6 3.3571 3.6012 -0.0005 7 7 4.0418 2.4800 0.0000 8 6 3.4409 1.2950 0.0005 9 6 4.2531 0.0598 0.0017 10 8 3.7075 -1.0263 0.0017 11 7 5.5986 0.1379 0.0027 12 6 6.4035 -1.0861 0.0033 13 6 7.8889 -0.7198 0.0051 14 1 8.1388 -0.2108 -0.9259 15 7 8.1722 0.1660 1.1371 16 6 9.2398 1.0220 1.0863 17 1 9.8734 1.0437 0.2120 18 6 9.5085 1.8609 2.1591 19 7 8.7366 1.8340 3.2249 20 14 10.9654 3.0280 2.0902 21 1 10.5348 4.3232 1.5052 22 1 11.4847 3.2531 3.4631 23 1 12.0349 2.4353 1.2475 24 6 8.7154 -1.9738 0.1296 25 6 8.8995 -2.5602 1.3677 26 6 9.6540 -3.7129 1.4812 27 6 10.2320 -4.2741 0.3578 28 6 10.0523 -3.6846 -0.8795 29 6 9.2942 -2.5344 -0.9937 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 0.2173 2.3527 -0.0014 34 1 1.4194 4.5222 -0.0019 35 1 3.8828 4.5447 -0.0005 36 1 6.0340 1.0048 0.0031 37 1 6.1730 -1.6720 0.8931 38 1 6.1745 -1.6720 -0.8869 39 1 7.6032 0.1463 1.9225 40 1 8.9241 2.4205 3.9744 41 1 8.4514 -2.1195 2.2459 42 1 9.7941 -4.1736 2.4480 43 1 10.8237 -5.1732 0.4469 44 1 10.5042 -4.1228 -1.7572 45 1 9.1535 -2.0741 -1.9605 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664599945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:22 Heat of formation + Delta-G solvation = -10.888733 kcal Electronic energy + Delta-G solvation = -28936.664831 eV Core-core repulsion = 24919.280315 eV Total energy + Delta-G solvation = -4017.384515 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.92790 -40.49187 -39.81660 -39.15247 -37.36390 -35.19039 -33.82242 -33.14849 -31.84343 -31.69479 -31.17283 -29.10202 -28.25927 -26.13102 -25.22961 -24.06884 -23.73775 -23.19785 -21.67673 -21.36801 -19.55145 -19.16437 -18.66744 -18.13100 -17.65072 -17.06135 -16.83404 -16.68832 -16.30975 -16.09932 -15.81499 -15.68868 -15.33174 -15.22966 -14.96294 -14.69262 -14.49083 -14.26482 -14.14268 -14.03303 -13.72755 -13.43239 -13.39857 -12.87528 -12.79549 -12.43592 -12.42693 -12.39434 -12.17243 -11.98746 -11.83300 -11.62259 -11.29391 -10.97851 -10.83103 -10.57891 -10.07127 -9.67118 -9.52041 -9.48137 -9.01561 -7.89434 -5.19316 -0.34478 0.24041 0.59415 0.65716 1.49410 1.50087 1.57987 1.76910 2.14274 2.24415 2.58162 2.84796 3.02689 3.25585 3.44788 3.60977 3.76062 3.80512 4.00707 4.04506 4.17052 4.19233 4.24768 4.30931 4.34907 4.36644 4.37095 4.42119 4.50047 4.68847 4.70999 4.79797 4.83045 4.91133 5.00056 5.02917 5.23381 5.31427 5.42833 5.46563 5.55868 5.70087 5.74137 5.95591 6.22827 6.26565 6.30071 6.50493 6.86484 7.22583 7.37337 8.04645 8.31968 9.32992 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009150 B = 0.003606 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3059.256070 B = 7762.540806 C =10207.702525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.308 6.308 3 C 0.125 3.875 4 C -0.169 4.169 5 C -0.085 4.085 6 C 0.047 3.953 7 N -0.445 5.445 8 C 0.002 3.998 9 C 0.561 3.439 10 O -0.561 6.561 11 N -0.697 5.697 12 C 0.132 3.868 13 C 0.205 3.795 14 H 0.068 0.932 15 N -0.718 5.718 16 C -0.231 4.231 17 H 0.074 0.926 18 C -0.064 4.064 19 N -0.964 5.964 20 Si 0.965 3.035 21 H -0.285 1.285 22 H -0.300 1.300 23 H -0.274 1.274 24 C -0.100 4.100 25 C -0.110 4.110 26 C -0.136 4.136 27 C -0.130 4.130 28 C -0.125 4.125 29 C -0.127 4.127 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.074 0.926 33 H 0.185 0.815 34 H 0.191 0.809 35 H 0.187 0.813 36 H 0.415 0.585 37 H 0.049 0.951 38 H 0.079 0.921 39 H 0.373 0.627 40 H 0.249 0.751 41 H 0.094 0.906 42 H 0.129 0.871 43 H 0.146 0.854 44 H 0.148 0.852 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.923 -1.330 -9.755 17.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.219 6.219 3 C 0.074 3.926 4 C -0.195 4.195 5 C -0.105 4.105 6 C -0.115 4.115 7 N -0.157 5.157 8 C -0.134 4.134 9 C 0.347 3.653 10 O -0.440 6.440 11 N -0.348 5.348 12 C 0.007 3.993 13 C 0.095 3.905 14 H 0.086 0.914 15 N -0.357 5.357 16 C -0.363 4.363 17 H 0.092 0.908 18 C -0.256 4.256 19 N -0.614 5.614 20 Si 0.795 3.205 21 H -0.212 1.212 22 H -0.227 1.227 23 H -0.200 1.200 24 C -0.103 4.103 25 C -0.129 4.129 26 C -0.154 4.154 27 C -0.148 4.148 28 C -0.143 4.143 29 C -0.145 4.145 30 H 0.097 0.903 31 H 0.130 0.870 32 H 0.093 0.907 33 H 0.202 0.798 34 H 0.209 0.791 35 H 0.204 0.796 36 H 0.252 0.748 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.206 0.794 40 H 0.057 0.943 41 H 0.112 0.888 42 H 0.146 0.854 43 H 0.164 0.836 44 H 0.166 0.834 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.151 -2.258 -9.820 17.372 hybrid contribution -0.082 1.143 0.928 1.475 sum -14.233 -1.115 -8.892 16.820 Atomic orbital electron populations 1.23538 0.76092 1.05897 1.03037 1.86382 1.23649 1.25358 1.86492 1.20232 0.91810 0.87080 0.93522 1.22178 1.02649 0.90471 1.04220 1.22718 0.94752 0.99970 0.93042 1.23355 0.93037 0.96179 0.98900 1.67592 1.41363 0.98103 1.08677 1.20472 0.89578 0.92444 1.10919 1.18110 0.82435 0.88036 0.76681 1.90740 1.72411 1.28927 1.51970 1.45813 1.05327 1.11034 1.72624 1.21476 0.89861 0.86370 1.01551 1.19522 0.90316 0.88402 0.92250 0.91408 1.42455 1.33041 1.43190 1.17017 1.19465 1.04138 1.12165 1.00517 0.90845 1.25388 1.01614 1.02209 0.96422 1.69822 1.41582 1.42872 1.07155 0.85266 0.79745 0.79404 0.76070 1.21228 1.22728 1.19965 1.20824 0.99087 0.96531 0.93858 1.20940 0.99188 0.95607 0.97120 1.21342 0.98261 0.96023 0.99776 1.21395 1.00148 1.00829 0.92394 1.21411 0.98725 0.95688 0.98472 1.21273 0.98270 0.96896 0.98097 0.90327 0.86962 0.90714 0.79793 0.79145 0.79593 0.74779 0.93247 0.90242 0.79420 0.94259 0.88789 0.85352 0.83640 0.83415 0.84890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.83 113.37 1.11 1.24 16 2 O -0.31 -8.89 8.56 -68.64 -0.59 -9.48 16 3 C 0.12 3.53 6.71 22.93 0.15 3.68 16 4 C -0.17 -2.98 9.13 22.55 0.21 -2.78 16 5 C -0.09 -1.31 10.10 22.41 0.23 -1.08 16 6 C 0.05 1.09 11.17 84.89 0.95 2.03 16 7 N -0.45 -14.67 9.54 -184.63 -1.76 -16.43 16 8 C 0.00 0.09 6.76 41.93 0.28 0.37 16 9 C 0.56 22.95 7.80 86.78 0.68 23.63 16 10 O -0.56 -25.15 15.14 17.13 0.26 -24.89 16 11 N -0.70 -28.07 5.38 -466.00 -2.51 -30.58 16 12 C 0.13 5.14 5.21 86.38 0.45 5.59 16 13 C 0.20 8.30 2.65 44.24 0.12 8.41 16 14 H 0.07 2.69 7.94 -2.38 -0.02 2.67 16 15 N -0.72 -35.50 3.79 -326.49 -1.24 -36.74 16 16 C -0.23 -12.55 9.92 84.03 0.83 -11.72 16 17 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 18 C -0.06 -3.61 5.50 84.86 0.47 -3.14 16 19 N -0.96 -58.57 13.06 21.65 0.28 -58.29 16 20 Si 0.97 46.19 29.55 68.60 2.03 48.22 16 21 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 22 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 23 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 24 C -0.10 -3.80 4.92 -19.87 -0.10 -3.90 16 25 C -0.11 -4.35 9.33 22.27 0.21 -4.14 16 26 C -0.14 -4.48 10.05 22.27 0.22 -4.25 16 27 C -0.13 -3.60 10.05 22.27 0.22 -3.37 16 28 C -0.13 -3.42 10.05 22.27 0.22 -3.20 16 29 C -0.13 -4.04 9.67 22.27 0.22 -3.82 16 30 H 0.08 0.79 7.70 -2.39 -0.02 0.78 16 31 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.07 0.82 7.70 -2.39 -0.02 0.81 16 33 H 0.18 1.65 6.46 -2.91 -0.02 1.63 16 34 H 0.19 1.05 8.06 -2.91 -0.02 1.02 16 35 H 0.19 3.21 8.06 -2.91 -0.02 3.19 16 36 H 0.41 17.50 7.46 -92.71 -0.69 16.81 16 37 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 39 H 0.37 20.43 7.80 -92.71 -0.72 19.71 16 40 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 41 H 0.09 4.18 7.71 -2.91 -0.02 4.15 16 42 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 43 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 44 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 45 H 0.13 3.65 8.04 -2.91 -0.02 3.63 16 Total: -1.00 -77.45 386.83 2.57 -74.88 By element: Atomic # 1 Polarization: 50.15 SS G_CDS: -0.38 Total: 49.76 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 6.47 Total: 3.55 kcal Atomic # 7 Polarization: -136.82 SS G_CDS: -5.22 Total: -142.04 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -0.33 Total: -34.37 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -77.45 2.57 -74.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664599945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.994 kcal (2) G-P(sol) polarization free energy of solvation -77.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds