Wall clock time and date at job start Sat Apr 11 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35675 * 116.99893 * 2 1 4 4 C 1.39286 * 119.61742 * 179.72499 * 3 2 1 5 5 C 1.38330 * 119.30644 * 179.79354 * 4 3 2 6 6 C 1.38783 * 118.55647 * 0.47653 * 5 4 3 7 7 C 1.39124 * 119.18969 * 359.74880 * 6 5 4 8 8 C 1.48148 * 119.68958 * 180.02562 * 7 6 5 9 9 O 1.21512 * 120.00294 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00007 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00078 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47167 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.47095 * 295.00534 * 12 11 10 14 14 N 1.46500 * 109.46893 * 55.00069 * 12 11 10 15 15 C 1.36945 * 120.00017 * 204.99555 * 14 12 11 16 16 H 1.08002 * 119.99708 * 0.02562 * 15 14 12 17 17 C 1.38812 * 119.99952 * 180.02562 * 15 14 12 18 18 N 1.31617 * 119.99911 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99798 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47158 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47005 * 120.00046 * 19 17 15 22 22 H 1.48498 * 109.47119 * 240.00337 * 19 17 15 23 23 C 1.50694 * 109.47311 * 175.00064 * 12 11 10 24 24 C 1.38234 * 120.00458 * 279.73215 * 23 12 11 25 25 C 1.38233 * 120.00448 * 179.78788 * 24 23 12 26 26 C 1.38236 * 119.99690 * 0.43825 * 25 24 23 27 27 C 1.38233 * 120.00255 * 359.81228 * 26 25 24 28 28 C 1.38239 * 119.99867 * 359.97438 * 27 26 25 29 29 N 1.31892 * 119.61548 * 0.02562 * 3 2 1 30 30 H 1.08998 * 109.47043 * 300.00133 * 1 2 3 31 31 H 1.08999 * 109.47144 * 59.99732 * 1 2 3 32 32 H 1.08996 * 109.46732 * 179.97438 * 1 2 3 33 33 H 1.08008 * 120.34766 * 0.02562 * 4 3 2 34 34 H 1.08005 * 120.71987 * 180.20075 * 5 4 3 35 35 H 1.08003 * 120.40449 * 179.77173 * 6 5 4 36 36 H 0.97007 * 119.99891 * 359.97438 * 10 8 7 37 37 H 1.09000 * 109.47537 * 300.00105 * 11 10 8 38 38 H 1.09003 * 109.47149 * 60.00607 * 11 10 8 39 39 H 0.97001 * 120.00351 * 25.00725 * 14 12 11 40 40 H 0.97007 * 119.99731 * 179.97438 * 18 17 15 41 41 H 1.08004 * 119.99873 * 359.97438 * 24 23 12 42 42 H 1.07996 * 120.00310 * 180.27294 * 25 24 23 43 43 H 1.08005 * 120.00084 * 179.83890 * 26 25 24 44 44 H 1.07996 * 120.00277 * 180.02562 * 27 26 25 45 45 H 1.07999 * 119.99811 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4363 1.2725 0.0058 5 6 4.0576 2.5084 0.0014 6 6 3.2665 3.6487 0.0015 7 6 1.8818 3.5138 0.0006 8 6 1.0267 4.7235 0.0000 9 8 1.5353 5.8271 -0.0001 10 7 -0.3154 4.6001 -0.0004 11 6 -1.1610 5.7964 -0.0003 12 6 -2.6334 5.3802 -0.0014 13 1 -2.8643 4.8638 -0.9331 14 7 -2.8885 4.4845 1.1295 15 6 -3.9268 3.5932 1.0763 16 1 -4.5573 3.5504 0.2006 17 6 -4.1688 2.7449 2.1481 18 7 -3.4006 2.7976 3.2156 19 14 -5.5847 1.5286 2.0753 20 1 -6.2903 1.6676 0.7761 21 1 -5.0573 0.1466 2.2063 22 1 -6.5317 1.8044 3.1854 23 6 -3.5018 6.6055 0.1224 24 6 -3.7077 7.1847 1.3606 25 6 -4.5008 8.3112 1.4736 26 6 -5.0954 8.8533 0.3496 27 6 -4.8939 8.2712 -0.8879 28 6 -4.0972 7.1472 -1.0015 29 7 1.3192 2.3102 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 4.0240 0.3663 0.0099 34 1 5.1350 2.5844 0.0025 35 1 3.7202 4.6288 0.0018 36 1 -0.7215 3.7191 -0.0006 37 1 -0.9514 6.3896 0.8898 38 1 -0.9510 6.3898 -0.8902 39 1 -2.3220 4.5229 1.9160 40 1 -3.5700 2.2050 3.9647 41 1 -3.2464 6.7587 2.2394 42 1 -4.6580 8.7662 2.4403 43 1 -5.7172 9.7320 0.4381 44 1 -5.3581 8.6950 -1.7661 45 1 -3.9400 6.6922 -1.9683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691800027.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:39 Heat of formation + Delta-G solvation = 6.287234 kcal Electronic energy + Delta-G solvation = -29095.039526 eV Core-core repulsion = 25078.399817 eV Total energy + Delta-G solvation = -4016.639710 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.81173 -39.35411 -38.75264 -37.58341 -35.90509 -33.71752 -32.70036 -31.88706 -30.84547 -30.41708 -29.56627 -27.77349 -27.12166 -24.73834 -23.56290 -22.93655 -22.60407 -21.92733 -20.51668 -19.99528 -18.47442 -17.65362 -17.31176 -16.37482 -16.08294 -16.02072 -15.92676 -15.52934 -15.26257 -14.74331 -14.59719 -14.22031 -14.10705 -13.98100 -13.54479 -13.41097 -13.11003 -12.93669 -12.82245 -12.76862 -12.33353 -12.26243 -11.98466 -11.68047 -11.15957 -11.07238 -10.98197 -10.84548 -10.74412 -10.46950 -10.33053 -10.12711 -10.06234 -9.81537 -9.53814 -9.09354 -8.76544 -8.53220 -8.41028 -8.19680 -7.13607 -5.86971 -3.18273 0.64201 1.19844 1.85569 1.92400 2.89282 3.06850 3.34571 3.37361 3.43492 3.44475 3.89482 4.11557 4.30430 4.49409 4.78434 4.92290 4.94058 5.19210 5.24093 5.33859 5.39669 5.41316 5.43813 5.46666 5.55281 5.55953 5.59686 5.75246 5.84580 5.86626 5.90347 6.02013 6.03232 6.09152 6.24457 6.26157 6.40419 6.48186 6.62567 6.75556 6.92955 7.01594 7.17074 7.28012 7.52391 7.58126 7.63465 7.94544 8.28491 8.45226 9.41832 9.91721 10.28422 11.34273 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008891 B = 0.003963 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3148.407694 B = 7064.406831 C = 9556.104825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.309 6.309 3 C 0.323 3.677 4 C -0.173 4.173 5 C -0.050 4.050 6 C -0.154 4.154 7 C 0.127 3.873 8 C 0.565 3.435 9 O -0.543 6.543 10 N -0.689 5.689 11 C 0.118 3.882 12 C 0.198 3.802 13 H 0.066 0.934 14 N -0.713 5.713 15 C -0.241 4.241 16 H 0.071 0.929 17 C -0.005 4.005 18 N -0.926 5.926 19 Si 0.903 3.097 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.081 4.081 24 C -0.083 4.083 25 C -0.128 4.128 26 C -0.134 4.134 27 C -0.130 4.130 28 C -0.120 4.120 29 N -0.508 5.508 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.421 0.579 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.387 0.613 40 H 0.255 0.745 41 H 0.123 0.877 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.814 1.651 -7.925 12.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.216 6.216 3 C 0.141 3.859 4 C -0.194 4.194 5 C -0.076 4.076 6 C -0.175 4.175 7 C -0.010 4.010 8 C 0.349 3.651 9 O -0.421 6.421 10 N -0.340 5.340 11 C -0.006 4.006 12 C 0.087 3.913 13 H 0.084 0.916 14 N -0.354 5.354 15 C -0.372 4.372 16 H 0.089 0.911 17 C -0.201 4.201 18 N -0.574 5.574 19 Si 0.734 3.266 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.085 4.085 24 C -0.101 4.101 25 C -0.146 4.146 26 C -0.152 4.152 27 C -0.148 4.148 28 C -0.139 4.139 29 N -0.234 5.234 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.162 0.838 34 H 0.165 0.835 35 H 0.167 0.833 36 H 0.259 0.741 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.222 0.778 40 H 0.065 0.935 41 H 0.141 0.859 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 9.164 1.966 -7.950 12.290 hybrid contribution -0.481 -0.980 0.459 1.184 sum 8.682 0.986 -7.491 11.510 Atomic orbital electron populations 1.22982 0.76016 1.03269 1.03644 1.86212 1.23769 1.23987 1.87620 1.19800 0.89336 0.84640 0.92094 1.21267 0.92039 0.99787 1.06274 1.21400 1.00709 0.90873 0.94577 1.21960 0.93088 1.00724 1.01759 1.20866 0.92147 0.90360 0.97676 1.17842 0.82576 0.87206 0.77441 1.90757 1.74225 1.25832 1.51323 1.45849 1.04984 1.11811 1.71390 1.21677 0.89965 0.86865 1.02138 1.19474 0.89383 0.88543 0.93912 0.91636 1.42455 1.36290 1.40200 1.16428 1.19215 1.06060 1.10921 1.00995 0.91073 1.24702 0.99057 1.00015 0.96373 1.69672 1.40064 1.41235 1.06413 0.86187 0.82056 0.81017 0.77319 1.20547 1.21872 1.21889 1.20965 0.98211 0.96345 0.92956 1.21009 0.97303 0.94006 0.97792 1.21105 0.98417 0.97004 0.98069 1.20982 1.00895 1.00245 0.93112 1.20981 0.99781 0.96928 0.97138 1.21012 0.98277 0.96438 0.98152 1.67242 1.40892 0.98172 1.17137 0.91011 0.91999 0.88582 0.83785 0.83518 0.83282 0.74078 0.91273 0.91215 0.77836 0.93493 0.85886 0.86863 0.87100 0.87004 0.86754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.38 101.05 1.05 1.53 16 2 O -0.31 -4.33 10.48 -18.73 -0.20 -4.52 16 3 C 0.32 4.58 7.49 -17.14 -0.13 4.45 16 4 C -0.17 -1.91 10.05 -39.16 -0.39 -2.30 16 5 C -0.05 -0.50 10.16 -39.35 -0.40 -0.90 16 6 C -0.15 -1.94 9.63 -39.05 -0.38 -2.31 16 7 C 0.13 1.97 6.75 -83.02 -0.56 1.41 16 8 C 0.57 9.83 7.81 -12.19 -0.10 9.74 16 9 O -0.54 -10.36 16.32 5.36 0.09 -10.27 16 10 N -0.69 -11.96 5.38 -61.15 -0.33 -12.29 16 11 C 0.12 2.01 5.21 -4.04 -0.02 1.99 16 12 C 0.20 3.64 2.65 -69.08 -0.18 3.46 16 13 H 0.07 1.20 7.94 -51.93 -0.41 0.79 16 14 N -0.71 -15.98 3.79 -54.55 -0.21 -16.19 16 15 C -0.24 -6.12 9.92 -15.06 -0.15 -6.27 16 16 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 17 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 18 N -0.93 -26.17 13.06 55.49 0.72 -25.45 16 19 Si 0.90 21.39 29.55 -169.99 -5.02 16.36 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 C -0.08 -1.45 4.92 -104.63 -0.52 -1.96 16 24 C -0.08 -1.51 9.33 -39.58 -0.37 -1.88 16 25 C -0.13 -2.06 10.05 -39.58 -0.40 -2.46 16 26 C -0.13 -1.97 10.05 -39.58 -0.40 -2.37 16 27 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 28 C -0.12 -1.91 9.67 -39.58 -0.38 -2.29 16 29 N -0.51 -8.02 8.39 -9.88 -0.08 -8.11 16 30 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 31 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 32 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 34 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16 35 H 0.15 1.74 7.63 -52.48 -0.40 1.34 16 36 H 0.42 7.68 7.46 -40.82 -0.30 7.38 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.39 9.46 7.80 -40.82 -0.32 9.14 16 40 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.12 2.41 7.71 -52.48 -0.40 2.01 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 44 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 45 H 0.11 1.60 8.04 -52.49 -0.42 1.18 16 LS Contribution 391.52 15.07 5.90 5.90 Total: -1.00 -30.10 391.52 -8.97 -39.07 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: -6.03 Total: 18.18 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -3.81 Total: -2.69 kcal Atomic # 7 Polarization: -62.14 SS G_CDS: 0.11 Total: -62.04 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.11 Total: -14.79 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.10 -8.97 -39.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691800027.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.360 kcal (2) G-P(sol) polarization free energy of solvation -30.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds