Wall clock time and date at job start Sat Apr 11 2020 06:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35675 * 116.99893 * 2 1 4 4 C 1.39286 * 119.61742 * 179.72499 * 3 2 1 5 5 C 1.38330 * 119.30644 * 179.79354 * 4 3 2 6 6 C 1.38783 * 118.55647 * 0.47653 * 5 4 3 7 7 C 1.39124 * 119.18969 * 359.74880 * 6 5 4 8 8 C 1.48148 * 119.68958 * 180.02562 * 7 6 5 9 9 O 1.21512 * 120.00294 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00007 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00078 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47167 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.47095 * 295.00534 * 12 11 10 14 14 N 1.46500 * 109.46893 * 55.00069 * 12 11 10 15 15 C 1.36945 * 120.00017 * 204.99555 * 14 12 11 16 16 H 1.08002 * 119.99708 * 0.02562 * 15 14 12 17 17 C 1.38812 * 119.99952 * 180.02562 * 15 14 12 18 18 N 1.31617 * 119.99911 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99798 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47158 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47005 * 120.00046 * 19 17 15 22 22 H 1.48498 * 109.47119 * 240.00337 * 19 17 15 23 23 C 1.50694 * 109.47311 * 175.00064 * 12 11 10 24 24 C 1.38234 * 120.00458 * 279.73215 * 23 12 11 25 25 C 1.38233 * 120.00448 * 179.78788 * 24 23 12 26 26 C 1.38236 * 119.99690 * 0.43825 * 25 24 23 27 27 C 1.38233 * 120.00255 * 359.81228 * 26 25 24 28 28 C 1.38239 * 119.99867 * 359.97438 * 27 26 25 29 29 N 1.31892 * 119.61548 * 0.02562 * 3 2 1 30 30 H 1.08998 * 109.47043 * 300.00133 * 1 2 3 31 31 H 1.08999 * 109.47144 * 59.99732 * 1 2 3 32 32 H 1.08996 * 109.46732 * 179.97438 * 1 2 3 33 33 H 1.08008 * 120.34766 * 0.02562 * 4 3 2 34 34 H 1.08005 * 120.71987 * 180.20075 * 5 4 3 35 35 H 1.08003 * 120.40449 * 179.77173 * 6 5 4 36 36 H 0.97007 * 119.99891 * 359.97438 * 10 8 7 37 37 H 1.09000 * 109.47537 * 300.00105 * 11 10 8 38 38 H 1.09003 * 109.47149 * 60.00607 * 11 10 8 39 39 H 0.97001 * 120.00351 * 25.00725 * 14 12 11 40 40 H 0.97007 * 119.99731 * 179.97438 * 18 17 15 41 41 H 1.08004 * 119.99873 * 359.97438 * 24 23 12 42 42 H 1.07996 * 120.00310 * 180.27294 * 25 24 23 43 43 H 1.08005 * 120.00084 * 179.83890 * 26 25 24 44 44 H 1.07996 * 120.00277 * 180.02562 * 27 26 25 45 45 H 1.07999 * 119.99811 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4363 1.2725 0.0058 5 6 4.0576 2.5084 0.0014 6 6 3.2665 3.6487 0.0015 7 6 1.8818 3.5138 0.0006 8 6 1.0267 4.7235 0.0000 9 8 1.5353 5.8271 -0.0001 10 7 -0.3154 4.6001 -0.0004 11 6 -1.1610 5.7964 -0.0003 12 6 -2.6334 5.3802 -0.0014 13 1 -2.8643 4.8638 -0.9331 14 7 -2.8885 4.4845 1.1295 15 6 -3.9268 3.5932 1.0763 16 1 -4.5573 3.5504 0.2006 17 6 -4.1688 2.7449 2.1481 18 7 -3.4006 2.7976 3.2156 19 14 -5.5847 1.5286 2.0753 20 1 -6.2903 1.6676 0.7761 21 1 -5.0573 0.1466 2.2063 22 1 -6.5317 1.8044 3.1854 23 6 -3.5018 6.6055 0.1224 24 6 -3.7077 7.1847 1.3606 25 6 -4.5008 8.3112 1.4736 26 6 -5.0954 8.8533 0.3496 27 6 -4.8939 8.2712 -0.8879 28 6 -4.0972 7.1472 -1.0015 29 7 1.3192 2.3102 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 4.0240 0.3663 0.0099 34 1 5.1350 2.5844 0.0025 35 1 3.7202 4.6288 0.0018 36 1 -0.7215 3.7191 -0.0006 37 1 -0.9514 6.3896 0.8898 38 1 -0.9510 6.3898 -0.8902 39 1 -2.3220 4.5229 1.9160 40 1 -3.5700 2.2050 3.9647 41 1 -3.2464 6.7587 2.2394 42 1 -4.6580 8.7662 2.4403 43 1 -5.7172 9.7320 0.4381 44 1 -5.3581 8.6950 -1.7661 45 1 -3.9400 6.6922 -1.9683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691800027.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:38 Heat of formation + Delta-G solvation = -13.603373 kcal Electronic energy + Delta-G solvation = -29095.902048 eV Core-core repulsion = 25078.399817 eV Total energy + Delta-G solvation = -4017.502231 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.89845 -40.66788 -40.04149 -38.67033 -37.41563 -35.31838 -33.97929 -33.31759 -31.90546 -31.70295 -31.18743 -29.17873 -28.26061 -26.12657 -25.21790 -24.07362 -23.80728 -23.20859 -21.79717 -21.39766 -19.71073 -19.19642 -18.76498 -17.69016 -17.19101 -17.12753 -16.99822 -16.81105 -16.79333 -16.26716 -15.89458 -15.71911 -15.47128 -15.14455 -15.04713 -14.67827 -14.35559 -14.20718 -14.14341 -14.04680 -13.76518 -13.42021 -13.21153 -12.93339 -12.83602 -12.71914 -12.44867 -12.19587 -12.16613 -12.00281 -11.84736 -11.66896 -11.59779 -11.02453 -11.01227 -10.66981 -10.16129 -9.67947 -9.60845 -9.53266 -9.03718 -7.92080 -5.21709 -0.40876 0.24793 0.58355 0.64925 1.45704 1.48245 1.56239 1.65899 2.03182 2.11488 2.55231 2.79289 2.97022 3.02839 3.42255 3.75699 3.83947 3.93948 4.01564 4.03450 4.15812 4.20969 4.25370 4.33390 4.35023 4.40533 4.41338 4.43272 4.49404 4.66829 4.78589 4.80389 4.81919 4.94295 5.00894 5.10108 5.21294 5.30513 5.35628 5.36985 5.54077 5.69334 5.73472 5.94044 6.10600 6.24898 6.28079 6.36740 6.68538 7.06852 7.35128 8.02243 8.29210 9.30088 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008891 B = 0.003963 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3148.407694 B = 7064.406831 C = 9556.104825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.312 6.312 3 C 0.295 3.705 4 C -0.157 4.157 5 C -0.033 4.033 6 C -0.148 4.148 7 C 0.092 3.908 8 C 0.563 3.437 9 O -0.567 6.567 10 N -0.692 5.692 11 C 0.128 3.872 12 C 0.204 3.796 13 H 0.068 0.932 14 N -0.718 5.718 15 C -0.228 4.228 16 H 0.073 0.927 17 C -0.062 4.062 18 N -0.962 5.962 19 Si 0.960 3.040 20 H -0.268 1.268 21 H -0.293 1.293 22 H -0.301 1.301 23 C -0.100 4.100 24 C -0.109 4.109 25 C -0.136 4.136 26 C -0.130 4.130 27 C -0.126 4.126 28 C -0.126 4.126 29 N -0.534 5.534 30 H 0.040 0.960 31 H 0.056 0.944 32 H 0.122 0.878 33 H 0.178 0.822 34 H 0.197 0.803 35 H 0.158 0.842 36 H 0.415 0.585 37 H 0.054 0.946 38 H 0.084 0.916 39 H 0.374 0.626 40 H 0.248 0.752 41 H 0.095 0.905 42 H 0.128 0.872 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.459 1.966 -9.842 14.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.219 6.219 3 C 0.113 3.887 4 C -0.177 4.177 5 C -0.058 4.058 6 C -0.169 4.169 7 C -0.043 4.043 8 C 0.349 3.651 9 O -0.447 6.447 10 N -0.342 5.342 11 C 0.004 3.996 12 C 0.094 3.906 13 H 0.086 0.914 14 N -0.357 5.357 15 C -0.359 4.359 16 H 0.091 0.909 17 C -0.255 4.255 18 N -0.612 5.612 19 Si 0.791 3.209 20 H -0.193 1.193 21 H -0.220 1.220 22 H -0.229 1.229 23 C -0.103 4.103 24 C -0.128 4.128 25 C -0.154 4.154 26 C -0.148 4.148 27 C -0.143 4.143 28 C -0.145 4.145 29 N -0.261 5.261 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.140 0.860 33 H 0.196 0.804 34 H 0.214 0.786 35 H 0.175 0.825 36 H 0.253 0.747 37 H 0.072 0.928 38 H 0.103 0.897 39 H 0.206 0.794 40 H 0.057 0.943 41 H 0.113 0.887 42 H 0.146 0.854 43 H 0.162 0.838 44 H 0.165 0.835 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.802 2.315 -9.919 14.136 hybrid contribution -0.615 -0.985 0.985 1.523 sum 9.187 1.330 -8.934 12.884 Atomic orbital electron populations 1.22926 0.76241 1.04388 1.01818 1.86206 1.23570 1.24137 1.87940 1.20294 0.90754 0.84186 0.93429 1.21744 0.90675 1.01680 1.03605 1.21930 1.02719 0.89089 0.92053 1.22216 0.91982 1.02366 1.00380 1.20701 0.93097 0.89525 1.01008 1.18233 0.82518 0.87876 0.76520 1.90721 1.74508 1.26858 1.52583 1.45876 1.05351 1.11427 1.71557 1.21560 0.89187 0.86817 1.02026 1.19531 0.90336 0.88407 0.92282 0.91372 1.42470 1.35456 1.40757 1.17010 1.19471 1.05770 1.10275 1.00406 0.90870 1.25339 1.01466 1.02175 0.96489 1.69820 1.41940 1.42403 1.07073 0.85271 0.79446 0.79026 0.77198 1.19299 1.21989 1.22907 1.20810 0.99142 0.96559 0.93791 1.20939 0.99035 0.95655 0.97144 1.21340 0.98036 0.96332 0.99726 1.21394 1.00140 1.00809 0.92429 1.21410 0.98580 0.95910 0.98432 1.21273 0.98030 0.97044 0.98125 1.67062 1.42230 0.98779 1.18062 0.94139 0.92482 0.85963 0.80441 0.78593 0.82459 0.74718 0.92759 0.89747 0.79388 0.94312 0.88708 0.85422 0.83752 0.83498 0.84869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.15 10.38 113.37 1.18 2.32 16 2 O -0.31 -8.66 10.48 -89.92 -0.94 -9.60 16 3 C 0.30 8.25 7.49 84.94 0.64 8.88 16 4 C -0.16 -3.02 10.05 22.54 0.23 -2.79 16 5 C -0.03 -0.54 10.16 22.42 0.23 -0.31 16 6 C -0.15 -3.53 9.63 22.61 0.22 -3.31 16 7 C 0.09 2.93 6.75 41.83 0.28 3.22 16 8 C 0.56 20.44 7.81 86.88 0.68 21.12 16 9 O -0.57 -22.28 16.32 -3.75 -0.06 -22.34 16 10 N -0.69 -25.43 5.38 -465.68 -2.50 -27.94 16 11 C 0.13 4.58 5.21 86.38 0.45 5.03 16 12 C 0.20 7.76 2.65 44.24 0.12 7.87 16 13 H 0.07 2.54 7.94 -2.39 -0.02 2.52 16 14 N -0.72 -33.73 3.79 -326.50 -1.24 -34.97 16 15 C -0.23 -11.86 9.92 84.03 0.83 -11.03 16 16 H 0.07 3.74 7.83 -2.91 -0.02 3.71 16 17 C -0.06 -3.39 5.50 84.86 0.47 -2.93 16 18 N -0.96 -56.76 13.06 21.65 0.28 -56.48 16 19 Si 0.96 44.94 29.55 68.60 2.03 46.97 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 22 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 23 C -0.10 -3.60 4.92 -19.87 -0.10 -3.70 16 24 C -0.11 -4.12 9.33 22.27 0.21 -3.91 16 25 C -0.14 -4.30 10.05 22.27 0.22 -4.08 16 26 C -0.13 -3.45 10.05 22.27 0.22 -3.22 16 27 C -0.13 -3.27 10.05 22.27 0.22 -3.05 16 28 C -0.13 -3.81 9.67 22.27 0.22 -3.59 16 29 N -0.53 -17.41 8.39 -298.21 -2.50 -19.91 16 30 H 0.04 1.36 8.10 -2.39 -0.02 1.34 16 31 H 0.06 1.60 8.10 -2.39 -0.02 1.58 16 32 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.18 2.21 8.06 -2.91 -0.02 2.19 16 34 H 0.20 1.29 8.06 -2.91 -0.02 1.27 16 35 H 0.16 3.45 7.63 -2.91 -0.02 3.42 16 36 H 0.42 16.23 7.46 -92.70 -0.69 15.54 16 37 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 39 H 0.37 19.51 7.80 -92.71 -0.72 18.79 16 40 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 41 H 0.09 4.03 7.71 -2.91 -0.02 4.01 16 42 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 43 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 44 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 45 H 0.13 3.43 8.04 -2.91 -0.02 3.41 16 Total: -1.00 -68.62 391.52 0.99 -67.63 By element: Atomic # 1 Polarization: 50.49 SS G_CDS: -0.39 Total: 50.11 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 6.31 Total: 6.54 kcal Atomic # 7 Polarization: -133.34 SS G_CDS: -5.96 Total: -139.30 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -1.00 Total: -31.95 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -68.62 0.99 -67.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691800027.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.029 kcal (2) G-P(sol) polarization free energy of solvation -68.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds