Wall clock time and date at job start Sat Apr 11 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35749 * 116.99776 * 2 1 4 4 C 1.39212 * 120.81495 * 0.02562 * 3 2 1 5 5 C 1.38321 * 119.28859 * 179.97438 * 4 3 2 6 6 N 1.31612 * 120.96970 * 359.72012 * 5 4 3 7 7 C 1.32797 * 121.78198 * 0.57209 * 6 5 4 8 8 C 1.48182 * 119.69878 * 179.70605 * 7 6 5 9 9 O 1.21510 * 119.99634 * 179.72660 * 8 7 6 10 10 N 1.34778 * 119.99947 * 359.72943 * 8 7 6 11 11 C 1.46499 * 119.99951 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47089 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.46924 * 65.00069 * 12 11 10 14 14 N 1.46501 * 109.47434 * 305.00282 * 12 11 10 15 15 C 1.36931 * 119.99794 * 154.99873 * 14 12 11 16 16 H 1.07998 * 120.00551 * 359.97438 * 15 14 12 17 17 C 1.38817 * 119.99597 * 179.97438 * 15 14 12 18 18 N 1.31620 * 119.99614 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00060 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.46882 * 90.00025 * 19 17 15 21 21 H 1.48504 * 109.46952 * 209.99756 * 19 17 15 22 22 H 1.48499 * 109.47303 * 329.99817 * 19 17 15 23 23 C 1.50702 * 109.46994 * 184.99704 * 12 11 10 24 24 C 1.38234 * 120.00272 * 260.00119 * 23 12 11 25 25 C 1.38230 * 119.99880 * 179.97438 * 24 23 12 26 26 C 1.38235 * 120.00326 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99464 * 80.02835 * 23 12 11 29 29 C 1.39108 * 120.60000 * 359.43276 * 7 6 5 30 30 H 1.08992 * 109.47779 * 300.00300 * 1 2 3 31 31 H 1.09006 * 109.47037 * 60.00290 * 1 2 3 32 32 H 1.08999 * 109.46941 * 179.97438 * 1 2 3 33 33 H 1.08004 * 120.35649 * 359.96102 * 4 3 2 34 34 H 1.07996 * 119.51120 * 179.97438 * 5 4 3 35 35 H 0.96993 * 119.99921 * 359.97438 * 10 8 7 36 36 H 1.09005 * 109.47094 * 59.99644 * 11 10 8 37 37 H 1.08998 * 109.46863 * 300.00125 * 11 10 8 38 38 H 0.96995 * 119.99488 * 334.99643 * 14 12 11 39 39 H 0.97009 * 119.99644 * 180.02562 * 18 17 15 40 40 H 1.08001 * 119.99769 * 0.02562 * 24 23 12 41 41 H 1.08000 * 120.00376 * 180.02562 * 25 24 23 42 42 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 43 43 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 44 44 H 1.07997 * 120.00481 * 359.97438 * 28 23 12 45 45 H 1.08001 * 120.50425 * 180.29681 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2096 0.0000 4 6 1.3036 2.3877 0.0005 5 6 1.9642 3.6030 0.0011 6 7 3.2791 3.6592 0.0066 7 6 4.0261 2.5613 0.0006 8 6 5.5033 2.6783 0.0006 9 8 6.1920 1.6772 0.0001 10 7 6.0828 3.8951 0.0012 11 6 7.5433 4.0108 0.0018 12 6 7.9377 5.4891 0.0017 13 1 7.6113 5.9522 0.9329 14 7 7.2986 6.1651 -1.1300 15 6 7.0628 7.5129 -1.0780 16 1 7.3476 8.0776 -0.2026 17 6 6.4577 8.1535 -2.1506 18 7 6.2307 9.4490 -2.1005 19 14 5.9645 7.1767 -3.6645 20 1 4.5759 6.6766 -3.5001 21 1 6.0372 8.0507 -4.8629 22 1 6.8881 6.0263 -3.8340 23 6 9.4348 5.6095 -0.1214 24 6 10.2041 5.8455 1.0026 25 6 11.5774 5.9554 0.8896 26 6 12.1816 5.8287 -0.3473 27 6 11.4124 5.5916 -1.4711 28 6 10.0388 5.4844 -1.3586 29 6 3.4344 1.3023 0.0000 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 0.2242 2.3532 0.0003 34 1 1.3924 4.5192 0.0011 35 1 5.5330 4.6941 0.0012 36 1 7.9464 3.5275 -0.8882 37 1 7.9457 3.5270 0.8917 38 1 7.0425 5.6578 -1.9161 39 1 5.8075 9.8966 -2.8499 40 1 9.7322 5.9432 1.9691 41 1 12.1785 6.1394 1.7677 42 1 13.2541 5.9190 -0.4363 43 1 11.8843 5.4930 -2.4376 44 1 9.4378 5.3000 -2.2368 45 1 4.0435 0.4103 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713699924.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:45 Heat of formation + Delta-G solvation = 10.852956 kcal Electronic energy + Delta-G solvation = -28591.936635 eV Core-core repulsion = 24575.494910 eV Total energy + Delta-G solvation = -4016.441725 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.99478 -39.56553 -38.88684 -38.11376 -36.05413 -33.72211 -32.15068 -31.80833 -31.47226 -30.48273 -29.98392 -28.15154 -27.68702 -24.67327 -23.57686 -23.20194 -22.60441 -21.91115 -20.57554 -20.02741 -18.82266 -17.80212 -17.51455 -16.54040 -16.28129 -16.26727 -15.93662 -15.62250 -15.47420 -14.88870 -14.81006 -14.54057 -14.22956 -14.11957 -13.91689 -13.72182 -13.21416 -13.01690 -12.84773 -12.81364 -12.70617 -12.44281 -12.17971 -11.96262 -11.68000 -11.37447 -11.02471 -10.86425 -10.76718 -10.54119 -10.24315 -10.16739 -9.66596 -9.63025 -9.48163 -9.18636 -9.07113 -8.79147 -8.43908 -8.23704 -7.39373 -5.81433 -3.19564 0.48415 1.07735 1.82712 1.89035 2.64005 2.76892 3.33423 3.36251 3.38482 3.43450 3.79079 4.12778 4.26966 4.32540 4.54729 4.55726 4.70114 4.70584 4.88072 5.02874 5.05785 5.08372 5.31388 5.35276 5.38777 5.40258 5.45951 5.54799 5.57261 5.70023 5.73395 5.74065 5.98088 6.03443 6.07951 6.18456 6.34053 6.43839 6.56935 6.66207 6.82163 6.90840 6.96177 7.21064 7.48300 7.55482 7.87580 7.91643 8.34822 8.36409 9.12091 9.84152 10.01306 11.36330 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010996 B = 0.003173 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.835078 B = 8822.054315 C =10629.984371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.309 6.309 3 C 0.159 3.841 4 C -0.246 4.246 5 C 0.140 3.860 6 N -0.473 5.473 7 C 0.119 3.881 8 C 0.567 3.433 9 O -0.540 6.540 10 N -0.693 5.693 11 C 0.115 3.885 12 C 0.204 3.796 13 H 0.076 0.924 14 N -0.738 5.738 15 C -0.245 4.245 16 H 0.092 0.908 17 C 0.014 3.986 18 N -0.929 5.929 19 Si 0.878 3.122 20 H -0.282 1.282 21 H -0.292 1.292 22 H -0.278 1.278 23 C -0.080 4.080 24 C -0.116 4.116 25 C -0.127 4.127 26 C -0.132 4.132 27 C -0.127 4.127 28 C -0.087 4.087 29 C -0.146 4.146 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.143 0.857 34 H 0.168 0.832 35 H 0.422 0.578 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.364 0.636 39 H 0.260 0.740 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.118 0.882 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.666 -15.845 5.847 18.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.220 6.220 3 C 0.106 3.894 4 C -0.267 4.267 5 C -0.020 4.020 6 N -0.188 5.188 7 C -0.018 4.018 8 C 0.351 3.649 9 O -0.418 6.418 10 N -0.344 5.344 11 C -0.009 4.009 12 C 0.094 3.906 13 H 0.094 0.906 14 N -0.380 5.380 15 C -0.374 4.374 16 H 0.110 0.890 17 C -0.183 4.183 18 N -0.576 5.576 19 Si 0.708 3.292 20 H -0.209 1.209 21 H -0.218 1.218 22 H -0.204 1.204 23 C -0.084 4.084 24 C -0.135 4.135 25 C -0.145 4.145 26 C -0.150 4.150 27 C -0.145 4.145 28 C -0.106 4.106 29 C -0.168 4.168 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.122 0.878 33 H 0.161 0.839 34 H 0.185 0.815 35 H 0.261 0.739 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.197 0.803 39 H 0.070 0.930 40 H 0.135 0.865 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.132 0.868 44 H 0.136 0.864 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.697 -15.692 5.910 17.710 hybrid contribution -1.348 -0.671 -1.334 2.012 sum -7.045 -16.364 4.576 18.394 Atomic orbital electron populations 1.23163 0.77622 1.04483 1.01772 1.86088 1.21972 1.26029 1.87910 1.19184 0.92115 0.84788 0.93309 1.22425 1.01775 0.93212 1.09264 1.22666 0.89672 0.97292 0.92329 1.67703 1.07390 1.31054 1.12658 1.21037 0.94552 0.88593 0.97623 1.17764 0.85671 0.84002 0.77504 1.90769 1.63371 1.36693 1.50958 1.45871 1.08266 1.08642 1.71666 1.21739 0.79328 0.97403 1.02477 1.19435 0.87719 0.89873 0.93593 0.90626 1.42817 1.71699 1.07141 1.16364 1.19005 1.33198 0.82298 1.02911 0.88985 1.24608 1.00679 0.95303 0.97660 1.69696 1.48138 1.07728 1.32003 0.86664 0.78810 0.79434 0.84265 1.20864 1.21798 1.20442 1.20840 0.97213 0.97264 0.93069 1.21008 0.93654 1.00602 0.98187 1.21000 0.94864 1.01474 0.97212 1.20989 0.99169 1.01796 0.93081 1.21084 0.94213 1.01079 0.98121 1.20933 0.93967 0.98119 0.97556 1.21373 0.91922 0.99725 1.03800 0.92207 0.92210 0.87759 0.83910 0.81536 0.73883 0.91278 0.90693 0.80296 0.93008 0.86506 0.86838 0.86987 0.86844 0.86419 0.82753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.84 101.05 0.99 1.13 16 2 O -0.31 -3.07 10.51 -18.96 -0.20 -3.26 16 3 C 0.16 1.80 6.73 -38.85 -0.26 1.54 16 4 C -0.25 -2.36 9.12 -39.19 -0.36 -2.72 16 5 C 0.14 1.59 11.17 -17.61 -0.20 1.39 16 6 N -0.47 -6.97 9.54 -9.87 -0.09 -7.07 16 7 C 0.12 1.81 6.75 -83.04 -0.56 1.25 16 8 C 0.57 9.58 7.81 -12.17 -0.10 9.48 16 9 O -0.54 -10.09 16.32 5.36 0.09 -10.00 16 10 N -0.69 -11.60 5.38 -61.14 -0.33 -11.93 16 11 C 0.11 1.88 5.21 -4.04 -0.02 1.86 16 12 C 0.20 3.69 2.64 -69.08 -0.18 3.51 16 13 H 0.08 1.38 7.94 -51.93 -0.41 0.96 16 14 N -0.74 -16.13 3.60 -54.55 -0.20 -16.32 16 15 C -0.24 -6.48 10.40 -15.06 -0.16 -6.64 16 16 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 17 C 0.01 0.39 5.50 -17.43 -0.10 0.29 16 18 N -0.93 -28.30 13.97 55.49 0.78 -27.53 16 19 Si 0.88 21.61 27.74 -169.99 -4.71 16.90 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 22 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 23 C -0.08 -1.42 4.92 -104.62 -0.51 -1.93 16 24 C -0.12 -1.84 9.67 -39.59 -0.38 -2.22 16 25 C -0.13 -1.85 10.05 -39.59 -0.40 -2.25 16 26 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 27 C -0.13 -2.01 10.05 -39.58 -0.40 -2.41 16 28 C -0.09 -1.56 9.32 -39.58 -0.37 -1.93 16 29 C -0.15 -1.96 9.60 -38.89 -0.37 -2.34 16 30 H 0.06 0.26 7.71 -51.93 -0.40 -0.14 16 31 H 0.06 0.27 7.71 -51.93 -0.40 -0.13 16 32 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.14 0.89 6.45 -52.48 -0.34 0.55 16 34 H 0.17 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.42 7.39 7.47 -40.82 -0.30 7.09 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.36 8.04 5.66 -40.82 -0.23 7.81 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.12 1.63 8.04 -52.49 -0.42 1.21 16 41 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 43 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 44 H 0.12 2.19 7.72 -52.49 -0.41 1.78 16 45 H 0.15 2.04 7.64 -52.49 -0.40 1.64 16 LS Contribution 385.96 15.07 5.82 5.82 Total: -1.00 -33.20 385.96 -8.49 -41.68 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -5.87 Total: 16.01 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -3.77 Total: -4.30 kcal Atomic # 7 Polarization: -63.00 SS G_CDS: 0.16 Total: -62.84 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -0.11 Total: -13.27 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.71 Total: 16.90 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.20 -8.49 -41.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713699924.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.535 kcal (2) G-P(sol) polarization free energy of solvation -33.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds