Wall clock time and date at job start Sat Apr 11 2020 06:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35749 * 116.99776 * 2 1 4 4 C 1.39212 * 120.81495 * 0.02562 * 3 2 1 5 5 C 1.38321 * 119.28859 * 179.97438 * 4 3 2 6 6 N 1.31612 * 120.96970 * 359.72012 * 5 4 3 7 7 C 1.32797 * 121.78198 * 0.57209 * 6 5 4 8 8 C 1.48182 * 119.69878 * 179.70605 * 7 6 5 9 9 O 1.21510 * 119.99634 * 179.72660 * 8 7 6 10 10 N 1.34778 * 119.99947 * 359.72943 * 8 7 6 11 11 C 1.46499 * 119.99951 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47089 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.46924 * 65.00069 * 12 11 10 14 14 N 1.46501 * 109.47434 * 305.00282 * 12 11 10 15 15 C 1.36931 * 119.99794 * 154.99873 * 14 12 11 16 16 H 1.07998 * 120.00551 * 359.97438 * 15 14 12 17 17 C 1.38817 * 119.99597 * 179.97438 * 15 14 12 18 18 N 1.31620 * 119.99614 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00060 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.46882 * 90.00025 * 19 17 15 21 21 H 1.48504 * 109.46952 * 209.99756 * 19 17 15 22 22 H 1.48499 * 109.47303 * 329.99817 * 19 17 15 23 23 C 1.50702 * 109.46994 * 184.99704 * 12 11 10 24 24 C 1.38234 * 120.00272 * 260.00119 * 23 12 11 25 25 C 1.38230 * 119.99880 * 179.97438 * 24 23 12 26 26 C 1.38235 * 120.00326 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99464 * 80.02835 * 23 12 11 29 29 C 1.39108 * 120.60000 * 359.43276 * 7 6 5 30 30 H 1.08992 * 109.47779 * 300.00300 * 1 2 3 31 31 H 1.09006 * 109.47037 * 60.00290 * 1 2 3 32 32 H 1.08999 * 109.46941 * 179.97438 * 1 2 3 33 33 H 1.08004 * 120.35649 * 359.96102 * 4 3 2 34 34 H 1.07996 * 119.51120 * 179.97438 * 5 4 3 35 35 H 0.96993 * 119.99921 * 359.97438 * 10 8 7 36 36 H 1.09005 * 109.47094 * 59.99644 * 11 10 8 37 37 H 1.08998 * 109.46863 * 300.00125 * 11 10 8 38 38 H 0.96995 * 119.99488 * 334.99643 * 14 12 11 39 39 H 0.97009 * 119.99644 * 180.02562 * 18 17 15 40 40 H 1.08001 * 119.99769 * 0.02562 * 24 23 12 41 41 H 1.08000 * 120.00376 * 180.02562 * 25 24 23 42 42 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 43 43 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 44 44 H 1.07997 * 120.00481 * 359.97438 * 28 23 12 45 45 H 1.08001 * 120.50425 * 180.29681 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2096 0.0000 4 6 1.3036 2.3877 0.0005 5 6 1.9642 3.6030 0.0011 6 7 3.2791 3.6592 0.0066 7 6 4.0261 2.5613 0.0006 8 6 5.5033 2.6783 0.0006 9 8 6.1920 1.6772 0.0001 10 7 6.0828 3.8951 0.0012 11 6 7.5433 4.0108 0.0018 12 6 7.9377 5.4891 0.0017 13 1 7.6113 5.9522 0.9329 14 7 7.2986 6.1651 -1.1300 15 6 7.0628 7.5129 -1.0780 16 1 7.3476 8.0776 -0.2026 17 6 6.4577 8.1535 -2.1506 18 7 6.2307 9.4490 -2.1005 19 14 5.9645 7.1767 -3.6645 20 1 4.5759 6.6766 -3.5001 21 1 6.0372 8.0507 -4.8629 22 1 6.8881 6.0263 -3.8340 23 6 9.4348 5.6095 -0.1214 24 6 10.2041 5.8455 1.0026 25 6 11.5774 5.9554 0.8896 26 6 12.1816 5.8287 -0.3473 27 6 11.4124 5.5916 -1.4711 28 6 10.0388 5.4844 -1.3586 29 6 3.4344 1.3023 0.0000 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 0.2242 2.3532 0.0003 34 1 1.3924 4.5192 0.0011 35 1 5.5330 4.6941 0.0012 36 1 7.9464 3.5275 -0.8882 37 1 7.9457 3.5270 0.8917 38 1 7.0425 5.6578 -1.9161 39 1 5.8075 9.8966 -2.8499 40 1 9.7322 5.9432 1.9691 41 1 12.1785 6.1394 1.7677 42 1 13.2541 5.9190 -0.4363 43 1 11.8843 5.4930 -2.4376 44 1 9.4378 5.3000 -2.2368 45 1 4.0435 0.4103 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713699924.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:43 Heat of formation + Delta-G solvation = -11.457929 kcal Electronic energy + Delta-G solvation = -28592.904108 eV Core-core repulsion = 24575.494910 eV Total energy + Delta-G solvation = -4017.409198 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -41.94449 -40.75082 -40.09527 -39.05947 -37.54937 -35.33886 -33.84098 -32.73457 -32.50339 -31.85864 -31.51820 -29.28333 -28.48605 -25.99668 -24.84025 -24.47191 -23.89973 -23.19086 -21.74494 -21.42815 -20.06988 -19.53305 -18.46304 -17.67846 -17.48352 -17.06845 -16.95752 -16.87250 -16.69326 -16.28257 -15.98752 -15.91226 -15.55197 -15.33636 -14.94859 -14.82021 -14.62138 -14.59244 -14.24275 -14.07038 -14.02520 -13.53354 -13.40241 -13.06696 -12.89636 -12.55950 -12.48025 -12.34487 -12.23642 -12.00227 -11.80274 -11.70282 -11.48311 -11.03736 -10.70398 -10.46403 -10.11828 -10.01909 -9.68204 -9.59791 -9.29848 -7.99362 -5.33556 -0.50350 0.17701 0.57538 0.64302 1.37411 1.38933 1.44202 1.60745 1.80302 2.29095 2.48110 2.76091 2.99268 3.08919 3.32990 3.49315 3.54980 3.77044 3.93190 3.94726 4.08469 4.12127 4.20335 4.31199 4.32241 4.33830 4.37509 4.39953 4.46613 4.63447 4.67610 4.74593 4.76596 4.80749 4.88805 4.98227 5.19588 5.29262 5.29983 5.34892 5.69345 5.72098 5.77773 5.89772 6.11263 6.23664 6.25853 6.35230 6.76435 7.04250 7.07321 7.79803 7.99092 9.21962 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010996 B = 0.003173 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.835078 B = 8822.054315 C =10629.984371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.323 6.323 3 C 0.160 3.840 4 C -0.223 4.223 5 C 0.131 3.869 6 N -0.503 5.503 7 C 0.097 3.903 8 C 0.566 3.434 9 O -0.566 6.566 10 N -0.694 5.694 11 C 0.125 3.875 12 C 0.209 3.791 13 H 0.073 0.927 14 N -0.737 5.737 15 C -0.216 4.216 16 H 0.062 0.938 17 C -0.048 4.048 18 N -0.979 5.979 19 Si 0.939 3.061 20 H -0.278 1.278 21 H -0.300 1.300 22 H -0.262 1.262 23 C -0.101 4.101 24 C -0.126 4.126 25 C -0.126 4.126 26 C -0.130 4.130 27 C -0.135 4.135 28 C -0.113 4.113 29 C -0.157 4.157 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.123 0.877 33 H 0.184 0.816 34 H 0.194 0.806 35 H 0.419 0.581 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.364 0.636 39 H 0.256 0.744 40 H 0.132 0.868 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.132 0.868 44 H 0.102 0.898 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.311 -17.381 6.247 19.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.235 6.235 3 C 0.106 3.894 4 C -0.244 4.244 5 C -0.028 4.028 6 N -0.219 5.219 7 C -0.040 4.040 8 C 0.351 3.649 9 O -0.445 6.445 10 N -0.345 5.345 11 C 0.001 3.999 12 C 0.100 3.900 13 H 0.090 0.910 14 N -0.379 5.379 15 C -0.346 4.346 16 H 0.080 0.920 17 C -0.240 4.240 18 N -0.629 5.629 19 Si 0.768 3.232 20 H -0.204 1.204 21 H -0.227 1.227 22 H -0.187 1.187 23 C -0.105 4.105 24 C -0.144 4.144 25 C -0.144 4.144 26 C -0.148 4.148 27 C -0.153 4.153 28 C -0.131 4.131 29 C -0.179 4.179 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.142 0.858 33 H 0.202 0.798 34 H 0.211 0.789 35 H 0.257 0.743 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.197 0.803 39 H 0.065 0.935 40 H 0.150 0.850 41 H 0.163 0.837 42 H 0.162 0.838 43 H 0.150 0.850 44 H 0.120 0.880 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.326 -17.291 6.338 19.472 hybrid contribution -1.169 -0.272 -1.327 1.789 sum -7.495 -17.563 5.011 19.742 Atomic orbital electron populations 1.23552 0.75077 1.06396 1.03163 1.86088 1.24554 1.25329 1.87512 1.19210 0.91481 0.86039 0.92645 1.22779 1.03611 0.91652 1.06332 1.23211 0.88756 0.99202 0.91645 1.67636 1.09134 1.31172 1.13911 1.20724 0.93476 0.89532 1.00233 1.18101 0.86748 0.83446 0.76606 1.90736 1.64300 1.37259 1.52221 1.45879 1.08227 1.08609 1.71781 1.21631 0.79383 0.96038 1.02832 1.19493 0.88223 0.90419 0.91845 0.90955 1.42711 1.72226 1.05505 1.17489 1.18896 1.30625 0.83896 1.01216 0.91970 1.25228 1.01995 0.96084 1.00710 1.69852 1.50510 1.09606 1.32943 0.85656 0.78813 0.78321 0.80400 1.20436 1.22717 1.18737 1.20729 0.96566 0.99164 0.94008 1.21269 0.94596 1.00326 0.98238 1.21411 0.94476 0.99935 0.98549 1.21410 1.00798 1.00084 0.92474 1.21364 0.93488 1.00682 0.99757 1.20973 0.95144 0.99913 0.97102 1.21359 0.93357 0.98799 1.04378 0.90615 0.90857 0.85843 0.79843 0.78921 0.74330 0.91845 0.89315 0.80288 0.93479 0.84996 0.83652 0.83758 0.85027 0.88007 0.83549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.84 113.37 1.12 1.20 16 2 O -0.32 -5.74 10.51 -90.74 -0.95 -6.70 16 3 C 0.16 3.36 6.73 22.74 0.15 3.51 16 4 C -0.22 -3.64 9.12 22.52 0.21 -3.43 16 5 C 0.13 2.72 11.17 84.75 0.95 3.67 16 6 N -0.50 -14.66 9.54 -185.13 -1.77 -16.43 16 7 C 0.10 2.98 6.75 41.85 0.28 3.26 16 8 C 0.57 19.65 7.81 86.89 0.68 20.33 16 9 O -0.57 -21.74 16.32 -3.75 -0.06 -21.80 16 10 N -0.69 -23.78 5.38 -465.65 -2.50 -26.28 16 11 C 0.13 4.16 5.21 86.38 0.45 4.61 16 12 C 0.21 7.68 2.64 44.24 0.12 7.80 16 13 H 0.07 2.69 7.94 -2.39 -0.02 2.67 16 14 N -0.74 -32.72 3.60 -326.51 -1.18 -33.90 16 15 C -0.22 -11.71 10.40 84.04 0.87 -10.83 16 16 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 17 C -0.05 -2.77 5.50 84.86 0.47 -2.30 16 18 N -0.98 -61.44 13.97 21.65 0.30 -61.13 16 19 Si 0.94 45.50 27.74 68.60 1.90 47.40 16 20 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 21 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 22 H -0.26 -11.82 6.52 99.48 0.65 -11.17 16 23 C -0.10 -3.59 4.92 -19.87 -0.10 -3.69 16 24 C -0.13 -3.83 9.67 22.27 0.22 -3.62 16 25 C -0.13 -3.33 10.05 22.27 0.22 -3.10 16 26 C -0.13 -3.41 10.05 22.27 0.22 -3.19 16 27 C -0.13 -4.09 10.05 22.27 0.22 -3.86 16 28 C -0.11 -4.04 9.32 22.27 0.21 -3.83 16 29 C -0.16 -4.22 9.60 22.72 0.22 -4.00 16 30 H 0.08 0.35 7.71 -2.39 -0.02 0.33 16 31 H 0.07 0.37 7.71 -2.38 -0.02 0.36 16 32 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.18 1.40 6.45 -2.91 -0.02 1.38 16 34 H 0.19 2.82 8.06 -2.91 -0.02 2.80 16 35 H 0.42 15.03 7.47 -92.71 -0.69 14.34 16 36 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 37 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.36 16.19 5.66 -92.71 -0.52 15.67 16 39 H 0.26 15.46 8.31 -92.70 -0.77 14.69 16 40 H 0.13 3.51 8.04 -2.91 -0.02 3.49 16 41 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 42 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 43 H 0.13 3.39 8.06 -2.91 -0.02 3.36 16 44 H 0.10 3.87 7.72 -2.91 -0.02 3.84 16 45 H 0.15 4.03 7.64 -2.91 -0.02 4.01 16 Total: -1.00 -74.56 385.96 2.00 -72.56 By element: Atomic # 1 Polarization: 44.02 SS G_CDS: -0.24 Total: 43.77 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 6.50 Total: 2.51 kcal Atomic # 7 Polarization: -132.60 SS G_CDS: -5.14 Total: -137.74 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -1.01 Total: -28.50 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.90 Total: 47.40 kcal Total: -74.56 2.00 -72.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713699924.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.098 kcal (2) G-P(sol) polarization free energy of solvation -74.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds