Wall clock time and date at job start Sat Apr 11 2020 06:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 114.00232 * 2 1 4 4 C 1.53000 * 109.47273 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47048 * 64.99890 * 4 3 2 6 6 C 1.36942 * 120.00328 * 274.48645 * 5 4 3 7 7 H 1.07996 * 120.00596 * 146.17154 * 6 5 4 8 8 C 1.38818 * 119.99328 * 326.16882 * 6 5 4 9 9 N 1.31618 * 120.00088 * 335.30207 * 8 6 5 10 10 Si 1.86802 * 119.99710 * 155.30052 * 8 6 5 11 11 H 1.48504 * 109.47128 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47157 * 120.00054 * 10 8 6 13 13 H 1.48500 * 109.47229 * 240.00356 * 10 8 6 14 14 C 1.46503 * 119.99972 * 94.48029 * 5 4 3 15 15 C 1.53000 * 109.47004 * 270.00026 * 14 5 4 16 16 N 1.46503 * 109.47004 * 179.97438 * 15 14 5 17 17 C 1.34773 * 120.00191 * 180.02562 * 16 15 14 18 18 O 1.21568 * 119.99915 * 359.97438 * 17 16 15 19 19 C 1.47757 * 120.00377 * 180.02562 * 17 16 15 20 20 N 1.32897 * 119.68327 * 359.97438 * 19 17 16 21 21 C 1.31289 * 121.71411 * 179.97438 * 20 19 17 22 22 C 1.39357 * 120.88399 * 0.02562 * 21 20 19 23 23 O 1.35729 * 120.35847 * 180.02562 * 22 21 20 24 24 C 1.42903 * 117.00002 * 0.02562 * 23 22 21 25 25 C 1.39041 * 119.27921 * 359.97438 * 22 21 20 26 26 C 1.38689 * 118.42678 * 359.97438 * 25 22 21 27 27 F 1.35100 * 120.46187 * 179.97438 * 26 25 22 28 28 H 1.09000 * 109.47103 * 300.00294 * 1 2 3 29 29 H 1.09006 * 109.46497 * 60.00069 * 1 2 3 30 30 H 1.08996 * 109.47143 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46975 * 59.99858 * 3 2 1 32 32 H 1.09003 * 109.46866 * 300.00068 * 3 2 1 33 33 H 1.08999 * 109.47084 * 305.00529 * 4 3 2 34 34 H 1.08996 * 109.47176 * 184.99991 * 4 3 2 35 35 H 0.97007 * 119.99742 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.46929 * 150.00566 * 14 5 4 37 37 H 1.08996 * 109.46834 * 30.00300 * 14 5 4 38 38 H 1.08997 * 109.47449 * 60.00279 * 15 14 5 39 39 H 1.08996 * 109.47548 * 299.99837 * 15 14 5 40 40 H 0.96996 * 119.99805 * 0.02562 * 16 15 14 41 41 H 1.08004 * 119.55220 * 180.28687 * 21 20 19 42 42 H 1.09007 * 109.47005 * 299.99851 * 24 23 22 43 43 H 1.08998 * 109.46847 * 60.00039 * 24 23 22 44 44 H 1.08996 * 109.46853 * 180.02562 * 24 23 22 45 45 H 1.08008 * 120.78657 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0099 -0.8004 -1.3641 7 1 3.7917 -1.2691 -2.3122 8 6 4.3242 -1.5809 -0.2599 9 7 5.0408 -1.0749 0.7212 10 14 3.7299 -3.3494 -0.1668 11 1 2.9498 -3.6745 -1.3879 12 1 4.8990 -4.2600 -0.0698 13 1 2.8689 -3.5199 1.0311 14 6 4.3823 1.4028 -2.3814 15 6 3.1642 1.7016 -3.2575 16 7 3.5696 2.5410 -4.3877 17 6 2.6562 2.9329 -5.2979 18 8 1.4959 2.5895 -5.1813 19 6 3.0652 3.7790 -6.4381 20 7 4.3355 4.1503 -6.5598 21 6 4.7426 4.9010 -7.5570 22 6 3.8498 5.3402 -8.5326 23 8 4.2823 6.1155 -9.5593 24 6 5.6723 6.4465 -9.5813 25 6 2.5112 4.9747 -8.4435 26 6 2.1133 4.1802 -7.3787 27 9 0.8227 3.8012 -7.2517 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 3.8508 0.5684 0.8426 34 1 3.9786 2.1765 0.0902 35 1 5.2601 -1.6202 1.4929 36 1 5.1343 0.8787 -2.9713 37 1 4.7999 2.3379 -2.0084 38 1 2.4121 2.2257 -2.6677 39 1 2.7466 0.7665 -3.6305 40 1 4.4955 2.8146 -4.4809 41 1 5.7843 5.1783 -7.6242 42 1 5.9303 6.9920 -8.6735 43 1 6.2628 5.5320 -9.6360 44 1 5.8839 7.0686 -10.4510 45 1 1.7982 5.3017 -9.1860 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717975293.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:09 Heat of formation + Delta-G solvation = -90.434214 kcal Electronic energy + Delta-G solvation = -29622.978028 eV Core-core repulsion = 25171.374937 eV Total energy + Delta-G solvation = -4451.603091 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.158 amu Computer time = 3.09 seconds Orbital eigenvalues (eV) -49.20181 -41.18398 -39.51164 -38.20802 -37.19310 -35.71361 -34.16692 -32.79502 -31.44741 -30.91006 -29.33940 -28.20641 -27.31871 -25.56297 -25.02188 -23.97083 -23.30452 -21.78562 -20.75642 -20.21645 -19.01842 -18.34009 -17.88026 -16.73750 -16.67709 -16.58182 -15.92664 -15.81967 -15.44274 -15.33390 -15.00721 -14.96029 -14.74341 -14.45519 -13.97141 -13.80170 -13.71369 -13.59267 -13.36627 -13.17386 -12.97404 -12.59314 -12.59038 -12.06908 -11.87598 -11.74999 -11.13945 -10.81472 -10.73330 -10.62316 -10.49050 -10.44418 -10.00879 -9.97480 -9.89653 -9.78390 -9.65751 -9.05591 -8.76430 -8.56510 -8.35627 -6.58463 -5.67833 -3.20504 0.20473 0.53785 2.38058 2.57605 3.17757 3.49779 3.49979 3.57967 3.62535 3.73384 3.82339 3.98700 4.37127 4.47662 4.53476 4.57095 4.65298 4.79781 4.86566 4.94167 5.20363 5.37572 5.42785 5.59637 5.82063 5.85116 5.88761 5.91801 5.96608 6.15485 6.22350 6.33780 6.36895 6.48610 6.60638 6.68733 6.71398 6.74318 6.97165 7.15349 7.71429 7.76996 7.93634 8.17142 8.36973 8.60309 9.25655 9.91785 10.42295 11.33736 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017077 B = 0.002406 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.196067 B =11634.345592 C =12357.449248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.351 6.351 3 C 0.046 3.954 4 C 0.136 3.864 5 N -0.571 5.571 6 C -0.243 4.243 7 H 0.059 0.941 8 C 0.022 3.978 9 N -0.890 5.890 10 Si 0.899 3.101 11 H -0.278 1.278 12 H -0.296 1.296 13 H -0.288 1.288 14 C 0.138 3.862 15 C 0.094 3.906 16 N -0.700 5.700 17 C 0.564 3.436 18 O -0.528 6.528 19 C 0.013 3.987 20 N -0.390 5.390 21 C 0.009 3.991 22 C 0.128 3.872 23 O -0.303 6.303 24 C 0.020 3.980 25 C -0.161 4.161 26 C 0.154 3.846 27 F -0.097 7.097 28 H 0.025 0.975 29 H 0.030 0.970 30 H 0.073 0.927 31 H 0.023 0.977 32 H 0.029 0.971 33 H 0.108 0.892 34 H 0.041 0.959 35 H 0.252 0.748 36 H 0.056 0.944 37 H 0.040 0.960 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.406 0.594 41 H 0.174 0.826 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.108 0.892 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.446 16.994 -17.644 24.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.269 6.269 3 C -0.033 4.033 4 C 0.010 3.990 5 N -0.290 5.290 6 C -0.372 4.372 7 H 0.077 0.923 8 C -0.178 4.178 9 N -0.533 5.533 10 Si 0.729 3.271 11 H -0.203 1.203 12 H -0.224 1.224 13 H -0.215 1.215 14 C 0.010 3.990 15 C -0.031 4.031 16 N -0.350 5.350 17 C 0.347 3.653 18 O -0.404 6.404 19 C -0.127 4.127 20 N -0.102 5.102 21 C -0.153 4.153 22 C 0.079 3.921 23 O -0.214 6.214 24 C -0.075 4.075 25 C -0.188 4.188 26 C 0.131 3.869 27 F -0.075 7.075 28 H 0.044 0.956 29 H 0.049 0.951 30 H 0.092 0.908 31 H 0.041 0.959 32 H 0.047 0.953 33 H 0.126 0.874 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.242 0.758 41 H 0.190 0.810 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.126 0.874 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.234 16.238 -16.878 23.422 hybrid contribution -0.871 -0.181 -0.563 1.053 sum -0.637 16.057 -17.441 23.716 Atomic orbital electron populations 1.22640 0.84367 1.01428 0.98437 1.88230 1.16430 1.27450 1.94798 1.23458 0.98642 0.84311 0.96872 1.21169 0.87919 0.96568 0.93370 1.43606 1.74042 1.02405 1.08970 1.18871 1.40718 0.80691 0.96940 0.92328 1.24877 0.96934 0.97662 0.98293 1.69983 1.36450 1.36664 1.10249 0.86311 0.78122 0.84837 0.77843 1.20279 1.22382 1.21467 1.20999 0.92691 0.94873 0.90430 1.22575 1.00829 0.93686 0.86032 1.45915 1.12084 1.51448 1.25598 1.17515 0.85795 0.80287 0.81664 1.90865 1.17840 1.56257 1.75413 1.21446 0.89247 1.03638 0.98319 1.67512 1.14749 1.07486 1.20436 1.23079 1.00713 0.99733 0.91789 1.20004 0.93090 0.90752 0.88287 1.86067 1.28064 1.64042 1.43249 1.23278 0.78575 1.01446 1.04188 1.20824 0.95283 1.02298 1.00385 1.18256 0.80162 0.94490 0.93965 1.91658 1.32484 1.88317 1.95015 0.95638 0.95150 0.90813 0.95890 0.95272 0.87449 0.94079 0.93827 0.92538 0.94187 0.92109 0.91283 0.75836 0.80959 0.91726 0.91702 0.87380 0.82026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.64 16 2 O -0.35 -8.13 9.96 -35.23 -0.35 -8.48 16 3 C 0.05 0.98 6.28 37.16 0.23 1.21 16 4 C 0.14 3.16 5.83 -4.04 -0.02 3.14 16 5 N -0.57 -13.86 2.45 -173.24 -0.43 -14.28 16 6 C -0.24 -6.64 8.74 -15.05 -0.13 -6.77 16 7 H 0.06 1.64 7.94 -52.49 -0.42 1.22 16 8 C 0.02 0.61 4.95 -17.43 -0.09 0.53 16 9 N -0.89 -25.64 11.36 55.49 0.63 -25.01 16 10 Si 0.90 22.68 29.62 -169.99 -5.04 17.65 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 13 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 14 C 0.14 2.75 5.82 -4.04 -0.02 2.73 16 15 C 0.09 1.78 6.00 -4.04 -0.02 1.75 16 16 N -0.70 -11.24 5.54 -61.28 -0.34 -11.58 16 17 C 0.56 9.57 7.80 -12.37 -0.10 9.47 16 18 O -0.53 -10.77 15.30 5.31 0.08 -10.69 16 19 C 0.01 0.18 6.75 -82.97 -0.56 -0.38 16 20 N -0.39 -4.49 9.52 -9.63 -0.09 -4.58 16 21 C 0.01 0.08 10.21 -17.37 -0.18 -0.10 16 22 C 0.13 1.05 6.72 -38.87 -0.26 0.79 16 23 O -0.30 -2.02 10.50 -18.89 -0.20 -2.22 16 24 C 0.02 0.06 9.82 101.05 0.99 1.05 16 25 C -0.16 -1.51 10.10 -39.12 -0.40 -1.90 16 26 C 0.15 1.94 7.31 -38.87 -0.28 1.65 16 27 F -0.10 -1.41 15.54 2.25 0.03 -1.37 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.03 0.60 6.47 -51.93 -0.34 0.26 16 33 H 0.11 2.88 5.37 -51.93 -0.28 2.60 16 34 H 0.04 0.86 7.84 -51.93 -0.41 0.45 16 35 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.06 1.13 8.04 -51.93 -0.42 0.72 16 37 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 38 H 0.06 1.21 6.47 -51.93 -0.34 0.88 16 39 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.41 5.62 7.79 -40.82 -0.32 5.30 16 41 H 0.17 0.84 6.31 -52.48 -0.33 0.51 16 42 H 0.06 0.12 7.67 -51.92 -0.40 -0.28 16 43 H 0.06 0.12 7.67 -51.93 -0.40 -0.27 16 44 H 0.11 0.11 8.14 -51.93 -0.42 -0.31 16 45 H 0.16 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 383.12 15.07 5.77 5.77 Total: -1.00 -33.97 383.12 -5.79 -39.76 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.14 Total: 0.22 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: 0.27 Total: 14.81 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -0.23 Total: -55.45 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.47 Total: -21.39 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.03 Total: -1.37 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.04 Total: 17.65 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.97 -5.79 -39.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717975293.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.673 kcal (2) G-P(sol) polarization free energy of solvation -33.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.09 seconds