Wall clock time and date at job start Sat Apr 11 2020 06:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 114.00232 * 2 1 4 4 C 1.53000 * 109.47273 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47048 * 64.99890 * 4 3 2 6 6 C 1.36942 * 120.00328 * 274.48645 * 5 4 3 7 7 H 1.07996 * 120.00596 * 146.17154 * 6 5 4 8 8 C 1.38818 * 119.99328 * 326.16882 * 6 5 4 9 9 N 1.31618 * 120.00088 * 335.30207 * 8 6 5 10 10 Si 1.86802 * 119.99710 * 155.30052 * 8 6 5 11 11 H 1.48504 * 109.47128 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47157 * 120.00054 * 10 8 6 13 13 H 1.48500 * 109.47229 * 240.00356 * 10 8 6 14 14 C 1.46503 * 119.99972 * 94.48029 * 5 4 3 15 15 C 1.53000 * 109.47004 * 270.00026 * 14 5 4 16 16 N 1.46503 * 109.47004 * 179.97438 * 15 14 5 17 17 C 1.34773 * 120.00191 * 180.02562 * 16 15 14 18 18 O 1.21568 * 119.99915 * 359.97438 * 17 16 15 19 19 C 1.47757 * 120.00377 * 180.02562 * 17 16 15 20 20 N 1.32897 * 119.68327 * 359.97438 * 19 17 16 21 21 C 1.31289 * 121.71411 * 179.97438 * 20 19 17 22 22 C 1.39357 * 120.88399 * 0.02562 * 21 20 19 23 23 O 1.35729 * 120.35847 * 180.02562 * 22 21 20 24 24 C 1.42903 * 117.00002 * 0.02562 * 23 22 21 25 25 C 1.39041 * 119.27921 * 359.97438 * 22 21 20 26 26 C 1.38689 * 118.42678 * 359.97438 * 25 22 21 27 27 F 1.35100 * 120.46187 * 179.97438 * 26 25 22 28 28 H 1.09000 * 109.47103 * 300.00294 * 1 2 3 29 29 H 1.09006 * 109.46497 * 60.00069 * 1 2 3 30 30 H 1.08996 * 109.47143 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46975 * 59.99858 * 3 2 1 32 32 H 1.09003 * 109.46866 * 300.00068 * 3 2 1 33 33 H 1.08999 * 109.47084 * 305.00529 * 4 3 2 34 34 H 1.08996 * 109.47176 * 184.99991 * 4 3 2 35 35 H 0.97007 * 119.99742 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.46929 * 150.00566 * 14 5 4 37 37 H 1.08996 * 109.46834 * 30.00300 * 14 5 4 38 38 H 1.08997 * 109.47449 * 60.00279 * 15 14 5 39 39 H 1.08996 * 109.47548 * 299.99837 * 15 14 5 40 40 H 0.96996 * 119.99805 * 0.02562 * 16 15 14 41 41 H 1.08004 * 119.55220 * 180.28687 * 21 20 19 42 42 H 1.09007 * 109.47005 * 299.99851 * 24 23 22 43 43 H 1.08998 * 109.46847 * 60.00039 * 24 23 22 44 44 H 1.08996 * 109.46853 * 180.02562 * 24 23 22 45 45 H 1.08008 * 120.78657 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0099 -0.8004 -1.3641 7 1 3.7917 -1.2691 -2.3122 8 6 4.3242 -1.5809 -0.2599 9 7 5.0408 -1.0749 0.7212 10 14 3.7299 -3.3494 -0.1668 11 1 2.9498 -3.6745 -1.3879 12 1 4.8990 -4.2600 -0.0698 13 1 2.8689 -3.5199 1.0311 14 6 4.3823 1.4028 -2.3814 15 6 3.1642 1.7016 -3.2575 16 7 3.5696 2.5410 -4.3877 17 6 2.6562 2.9329 -5.2979 18 8 1.4959 2.5895 -5.1813 19 6 3.0652 3.7790 -6.4381 20 7 4.3355 4.1503 -6.5598 21 6 4.7426 4.9010 -7.5570 22 6 3.8498 5.3402 -8.5326 23 8 4.2823 6.1155 -9.5593 24 6 5.6723 6.4465 -9.5813 25 6 2.5112 4.9747 -8.4435 26 6 2.1133 4.1802 -7.3787 27 9 0.8227 3.8012 -7.2517 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 3.8508 0.5684 0.8426 34 1 3.9786 2.1765 0.0902 35 1 5.2601 -1.6202 1.4929 36 1 5.1343 0.8787 -2.9713 37 1 4.7999 2.3379 -2.0084 38 1 2.4121 2.2257 -2.6677 39 1 2.7466 0.7665 -3.6305 40 1 4.4955 2.8146 -4.4809 41 1 5.7843 5.1783 -7.6242 42 1 5.9303 6.9920 -8.6735 43 1 6.2628 5.5320 -9.6360 44 1 5.8839 7.0686 -10.4510 45 1 1.7982 5.3017 -9.1860 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717975293.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:08 Heat of formation + Delta-G solvation = -115.658321 kcal Electronic energy + Delta-G solvation = -29624.071828 eV Core-core repulsion = 25171.374937 eV Total energy + Delta-G solvation = -4452.696890 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.158 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -50.19214 -41.95657 -40.63412 -39.08331 -38.84452 -37.41013 -35.74794 -33.65017 -33.26105 -31.95549 -30.89933 -29.17635 -28.39918 -27.15875 -26.18026 -25.42569 -24.27952 -23.28089 -22.21008 -21.85069 -19.71364 -19.34246 -18.84698 -18.61357 -17.46972 -17.44020 -17.38408 -16.87363 -16.70862 -16.62063 -16.43656 -16.24817 -16.12458 -15.69226 -15.54917 -15.32842 -15.01484 -14.77417 -14.49908 -14.37305 -14.09294 -13.89305 -13.58965 -13.42141 -13.03539 -12.92107 -12.72364 -12.51456 -12.43816 -12.38666 -12.29036 -11.92014 -11.73157 -11.53274 -11.48656 -10.89337 -10.75712 -10.45408 -10.36521 -10.14041 -9.68966 -8.58879 -7.75925 -5.30863 -0.67112 -0.21390 1.46070 1.51868 1.53141 1.59812 1.79929 2.01124 2.49358 2.59441 2.87572 2.97341 3.21178 3.33367 3.36669 3.52504 3.72679 3.79234 4.01036 4.20431 4.26543 4.40328 4.41610 4.44380 4.44899 4.51735 4.57502 4.68798 4.72047 4.72342 4.80989 4.83786 4.89668 4.95983 5.09627 5.11610 5.19033 5.42717 5.73794 5.84012 5.96519 6.26099 6.45665 6.55992 6.66680 7.09201 7.23726 7.92448 8.39037 9.21430 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017077 B = 0.002406 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.196067 B =11634.345592 C =12357.449248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.392 6.392 3 C 0.053 3.947 4 C 0.134 3.866 5 N -0.586 5.586 6 C -0.241 4.241 7 H 0.044 0.956 8 C -0.018 4.018 9 N -0.913 5.913 10 Si 0.944 3.056 11 H -0.279 1.279 12 H -0.292 1.292 13 H -0.293 1.293 14 C 0.143 3.857 15 C 0.117 3.883 16 N -0.691 5.691 17 C 0.562 3.438 18 O -0.572 6.572 19 C -0.016 4.016 20 N -0.399 5.399 21 C 0.021 3.979 22 C 0.148 3.852 23 O -0.306 6.306 24 C 0.005 3.995 25 C -0.158 4.158 26 C 0.138 3.862 27 F -0.117 7.117 28 H 0.049 0.951 29 H 0.035 0.965 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.033 0.967 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.249 0.751 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.037 0.963 40 H 0.419 0.581 41 H 0.213 0.787 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.128 0.872 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.599 19.215 -19.495 27.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.311 6.311 3 C -0.026 4.026 4 C 0.008 3.992 5 N -0.306 5.306 6 C -0.371 4.371 7 H 0.062 0.938 8 C -0.215 4.215 9 N -0.558 5.558 10 Si 0.774 3.226 11 H -0.204 1.204 12 H -0.220 1.220 13 H -0.220 1.220 14 C 0.016 3.984 15 C -0.010 4.010 16 N -0.342 5.342 17 C 0.347 3.653 18 O -0.452 6.452 19 C -0.153 4.153 20 N -0.111 5.111 21 C -0.143 4.143 22 C 0.098 3.902 23 O -0.217 6.217 24 C -0.089 4.089 25 C -0.185 4.185 26 C 0.115 3.885 27 F -0.095 7.095 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.100 0.900 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.257 0.743 41 H 0.229 0.771 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.146 0.854 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 1.402 18.484 -18.753 26.368 hybrid contribution -1.124 -0.683 -0.190 1.329 sum 0.278 17.801 -18.944 25.996 Atomic orbital electron populations 1.22803 0.82036 1.02488 0.99804 1.88152 1.19147 1.28667 1.95121 1.23327 0.97149 0.84007 0.98106 1.21134 0.89556 0.96756 0.91780 1.43748 1.74561 1.01965 1.10307 1.18894 1.39522 0.82428 0.96295 0.93801 1.25337 0.97633 1.00136 0.98430 1.70070 1.37663 1.37431 1.10593 0.85603 0.77580 0.82210 0.77240 1.20410 1.21958 1.22025 1.21022 0.92824 0.95197 0.89308 1.22044 0.99839 0.92598 0.86472 1.45696 1.12747 1.50936 1.24828 1.18012 0.85109 0.79924 0.82215 1.90826 1.19636 1.58063 1.76630 1.20871 0.90711 1.05520 0.98172 1.67471 1.13483 1.08326 1.21798 1.23725 1.02394 0.97814 0.90360 1.20021 0.92502 0.89505 0.88164 1.86101 1.30552 1.62902 1.42097 1.23701 0.76430 1.02736 1.06016 1.20990 0.96517 1.01333 0.99622 1.18459 0.79285 0.95690 0.95041 1.91601 1.33815 1.88823 1.95284 0.93266 0.94634 0.90036 0.93471 0.94929 0.90724 0.91896 0.94176 0.92753 0.91676 0.93104 0.94462 0.74341 0.77053 0.90196 0.90293 0.85400 0.79960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 11.01 113.37 1.25 2.15 16 2 O -0.39 -18.14 9.96 -148.98 -1.48 -19.62 16 3 C 0.05 2.20 6.28 71.98 0.45 2.65 16 4 C 0.13 6.20 5.83 86.38 0.50 6.70 16 5 N -0.59 -28.62 2.45 -702.00 -1.72 -30.34 16 6 C -0.24 -13.39 8.74 84.03 0.73 -12.66 16 7 H 0.04 2.52 7.94 -2.91 -0.02 2.50 16 8 C -0.02 -1.03 4.95 84.86 0.42 -0.61 16 9 N -0.91 -53.32 11.36 21.65 0.25 -53.07 16 10 Si 0.94 47.30 29.62 68.60 2.03 49.34 16 11 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 12 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 13 H -0.29 -14.83 7.11 99.48 0.71 -14.13 16 14 C 0.14 5.69 5.82 86.38 0.50 6.20 16 15 C 0.12 4.49 6.00 86.38 0.52 5.01 16 16 N -0.69 -22.34 5.54 -466.06 -2.58 -24.92 16 17 C 0.56 19.56 7.80 86.76 0.68 20.23 16 18 O -0.57 -24.46 15.30 -3.93 -0.06 -24.52 16 19 C -0.02 -0.42 6.75 41.86 0.28 -0.14 16 20 N -0.40 -8.45 9.52 -184.39 -1.76 -10.21 16 21 C 0.02 0.28 10.21 85.04 0.87 1.15 16 22 C 0.15 1.95 6.72 22.73 0.15 2.11 16 23 O -0.31 -2.83 10.50 -90.51 -0.95 -3.79 16 24 C 0.00 0.00 9.82 113.37 1.11 1.12 16 25 C -0.16 -2.66 10.10 22.57 0.23 -2.44 16 26 C 0.14 3.46 7.31 22.73 0.17 3.62 16 27 F -0.12 -3.54 15.54 44.97 0.70 -2.85 16 28 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.03 1.33 6.47 -2.39 -0.02 1.31 16 33 H 0.08 4.05 5.37 -2.39 -0.01 4.03 16 34 H 0.06 2.56 7.84 -2.39 -0.02 2.54 16 35 H 0.25 14.14 8.31 -92.70 -0.77 13.37 16 36 H 0.05 2.17 8.04 -2.38 -0.02 2.15 16 37 H 0.07 2.27 7.86 -2.39 -0.02 2.25 16 38 H 0.05 2.06 6.47 -2.39 -0.02 2.05 16 39 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.42 11.28 7.79 -92.71 -0.72 10.56 16 41 H 0.21 0.99 6.31 -2.91 -0.02 0.97 16 42 H 0.08 -0.10 7.67 -2.38 -0.02 -0.12 16 43 H 0.08 -0.08 7.67 -2.39 -0.02 -0.10 16 44 H 0.13 -0.31 8.14 -2.39 -0.02 -0.33 16 45 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -76.33 383.12 2.60 -73.74 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.31 Total: 11.14 kcal Atomic # 6 Polarization: 27.23 SS G_CDS: 7.87 Total: 35.10 kcal Atomic # 7 Polarization: -112.73 SS G_CDS: -5.82 Total: -118.54 kcal Atomic # 8 Polarization: -45.43 SS G_CDS: -2.49 Total: -47.93 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.70 Total: -2.85 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.34 kcal Total: -76.33 2.60 -73.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717975293.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.919 kcal (2) G-P(sol) polarization free energy of solvation -76.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds