Wall clock time and date at job start Sat Apr 11 2020 06:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35494 * 117.00257 * 2 1 4 4 C 1.39166 * 119.52763 * 180.02562 * 3 2 1 5 5 C 1.37955 * 119.26416 * 179.97438 * 4 3 2 6 6 C 1.40278 * 118.36178 * 0.02562 * 5 4 3 7 7 C 1.47614 * 120.50514 * 179.97438 * 6 5 4 8 8 O 1.21587 * 119.99368 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00532 * 180.02562 * 7 6 5 10 10 C 1.46493 * 120.00405 * 179.97438 * 9 7 6 11 11 C 1.52994 * 109.47387 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47606 * 295.00254 * 11 10 9 13 13 N 1.46504 * 109.47248 * 55.00570 * 11 10 9 14 14 C 1.36937 * 119.99889 * 205.00589 * 13 11 10 15 15 H 1.07997 * 120.00258 * 359.97438 * 14 13 11 16 16 C 1.38812 * 119.99633 * 179.97438 * 14 13 11 17 17 N 1.31620 * 120.00397 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99768 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47406 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47068 * 119.99800 * 18 16 14 21 21 H 1.48498 * 109.47003 * 239.99991 * 18 16 14 22 22 C 1.50706 * 109.47287 * 175.00277 * 11 10 9 23 23 C 1.38230 * 119.99715 * 279.72652 * 22 11 10 24 24 C 1.38240 * 119.99729 * 179.78750 * 23 22 11 25 25 C 1.38234 * 120.00158 * 0.44105 * 24 23 22 26 26 C 1.38236 * 119.99620 * 359.81583 * 25 24 23 27 27 C 1.38234 * 119.99957 * 99.99851 * 22 11 10 28 28 C 1.39531 * 118.99845 * 0.02562 * 6 5 4 29 29 N 1.31662 * 120.62701 * 359.97438 * 28 6 5 30 30 H 1.08998 * 109.47723 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46976 * 300.00090 * 1 2 3 32 32 H 1.09005 * 109.47382 * 59.99420 * 1 2 3 33 33 H 1.08000 * 120.36905 * 0.02562 * 4 3 2 34 34 H 1.08002 * 120.82085 * 179.72833 * 5 4 3 35 35 H 0.96997 * 119.99705 * 0.02562 * 9 7 6 36 36 H 1.09001 * 109.47118 * 300.00572 * 10 9 7 37 37 H 1.09007 * 109.47046 * 60.00254 * 10 9 7 38 38 H 0.96999 * 119.99656 * 24.99092 * 13 11 10 39 39 H 0.97000 * 120.00320 * 180.02562 * 17 16 14 40 40 H 1.08001 * 120.00748 * 359.97438 * 23 22 11 41 41 H 1.08006 * 119.99689 * 180.27690 * 24 23 22 42 42 H 1.07993 * 119.99921 * 179.83545 * 25 24 23 43 43 H 1.08000 * 120.00114 * 179.97438 * 26 25 24 44 44 H 1.07994 * 120.00074 * 359.97438 * 27 22 11 45 45 H 1.08000 * 119.68362 * 179.97438 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2072 0.0000 4 6 3.4345 1.2685 -0.0005 5 6 4.0552 2.5006 -0.0011 6 6 3.2526 3.6511 -0.0005 7 6 3.8670 4.9933 -0.0005 8 8 5.0774 5.1077 -0.0014 9 7 3.0863 6.0919 0.0006 10 6 3.6960 7.4239 0.0012 11 6 2.5968 8.4880 0.0031 12 1 2.0328 8.4295 -0.9278 13 7 1.6959 8.2576 1.1352 14 6 0.4036 8.7078 1.0845 15 1 0.0487 9.2330 0.2101 16 6 -0.4501 8.4890 2.1569 17 7 -0.0176 7.8484 3.2223 18 14 -2.2127 9.1037 2.0881 19 1 -2.4481 9.7879 0.7913 20 1 -3.1434 7.9538 2.2177 21 1 -2.4477 10.0586 3.2008 22 6 3.2204 9.8543 0.1274 23 6 3.6197 10.3217 1.3656 24 6 4.1958 11.5732 1.4790 25 6 4.3643 12.3610 0.3557 26 6 3.9601 11.8957 -0.8817 27 6 3.3881 10.6424 -0.9958 28 6 1.8647 3.5076 0.0011 29 7 1.3139 2.3117 0.0016 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 4.0210 0.3617 -0.0014 34 1 5.1324 2.5775 0.0029 35 1 2.1206 6.0006 0.0017 36 1 4.3149 7.5397 0.8909 37 1 4.3140 7.5410 -0.8891 38 1 2.0148 7.7860 1.9205 39 1 -0.6143 7.6952 3.9716 40 1 3.4844 9.7079 2.2439 41 1 4.5118 11.9365 2.4458 42 1 4.8119 13.3397 0.4448 43 1 4.0913 12.5113 -1.7593 44 1 3.0725 10.2789 -1.9625 45 1 1.2362 4.3860 0.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732022131.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:21 Heat of formation + Delta-G solvation = 4.812765 kcal Electronic energy + Delta-G solvation = -28557.652477 eV Core-core repulsion = 24540.948830 eV Total energy + Delta-G solvation = -4016.703647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.88813 -39.47769 -38.80305 -37.70109 -35.93815 -33.73140 -32.62256 -32.17189 -30.96672 -30.43063 -29.58974 -27.93667 -27.08054 -24.43095 -23.81172 -23.24590 -22.53977 -21.93495 -20.46749 -19.99481 -18.63476 -17.79941 -17.33396 -17.14889 -16.35714 -16.20797 -15.52407 -15.30560 -14.95737 -14.72104 -14.61063 -14.34518 -14.22539 -14.05608 -13.59598 -13.37218 -13.19395 -12.96147 -12.90958 -12.84815 -12.70290 -12.34285 -12.03875 -12.00990 -11.33938 -11.15634 -10.99496 -10.86163 -10.75302 -10.48615 -10.14615 -10.11339 -10.08845 -9.84180 -9.57219 -9.12324 -8.86658 -8.57903 -8.42356 -8.21268 -7.17316 -5.90306 -3.22034 0.67585 1.08867 1.84203 1.91081 2.87201 2.97112 3.35208 3.41114 3.43340 3.44242 3.82516 4.10353 4.28597 4.47679 4.72136 4.79577 4.91491 5.01418 5.15257 5.16954 5.21391 5.32590 5.38842 5.43241 5.45878 5.48465 5.53226 5.57788 5.69564 5.75463 5.83876 6.01084 6.01846 6.07740 6.18735 6.23720 6.38686 6.46361 6.60842 6.71854 6.91678 6.98681 7.00263 7.26099 7.51028 7.61368 7.62864 7.79829 8.25529 8.42475 9.39009 9.88226 10.24873 11.30914 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009488 B = 0.003278 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2950.254679 B = 8538.443088 C =10912.531672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.306 6.306 3 C 0.337 3.663 4 C -0.201 4.201 5 C 0.015 3.985 6 C -0.222 4.222 7 C 0.565 3.435 8 O -0.550 6.550 9 N -0.707 5.707 10 C 0.121 3.879 11 C 0.197 3.803 12 H 0.066 0.934 13 N -0.714 5.714 14 C -0.244 4.244 15 H 0.072 0.928 16 C -0.004 4.004 17 N -0.927 5.927 18 Si 0.904 3.096 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.292 1.292 22 C -0.082 4.082 23 C -0.083 4.083 24 C -0.128 4.128 25 C -0.134 4.134 26 C -0.130 4.130 27 C -0.120 4.120 28 C 0.186 3.814 29 N -0.541 5.541 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.147 0.853 34 H 0.154 0.846 35 H 0.409 0.591 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.387 0.613 39 H 0.256 0.744 40 H 0.123 0.877 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.115 0.885 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.191 -7.906 -7.974 12.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.213 6.213 3 C 0.158 3.842 4 C -0.222 4.222 5 C -0.011 4.011 6 C -0.227 4.227 7 C 0.352 3.648 8 O -0.429 6.429 9 N -0.359 5.359 10 C -0.003 4.003 11 C 0.086 3.914 12 H 0.084 0.916 13 N -0.356 5.356 14 C -0.375 4.375 15 H 0.090 0.910 16 C -0.201 4.201 17 N -0.574 5.574 18 Si 0.735 3.265 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.219 1.219 22 C -0.086 4.086 23 C -0.101 4.101 24 C -0.146 4.146 25 C -0.152 4.152 26 C -0.148 4.148 27 C -0.139 4.139 28 C 0.028 3.972 29 N -0.264 5.264 30 H 0.114 0.886 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.164 0.836 34 H 0.171 0.829 35 H 0.247 0.753 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.222 0.778 39 H 0.066 0.934 40 H 0.141 0.859 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.133 0.867 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 6.027 -8.128 -7.997 12.897 hybrid contribution -0.908 0.601 0.480 1.191 sum 5.119 -7.527 -7.516 11.805 Atomic orbital electron populations 1.22926 0.76805 1.03020 1.03006 1.86191 1.23326 1.24610 1.87143 1.20117 0.89503 0.84832 0.89724 1.21005 0.91789 0.99526 1.09838 1.21500 1.01198 0.89697 0.88670 1.20861 0.95007 0.94971 1.11885 1.17834 0.86540 0.83805 0.76648 1.90753 1.13825 1.87156 1.51199 1.45867 1.10996 1.05441 1.73573 1.21619 0.95696 0.80841 1.02145 1.19494 0.89740 0.88277 0.93863 0.91581 1.42482 1.08854 1.67698 1.16517 1.19225 0.86780 1.30386 1.01134 0.90994 1.24716 0.98319 1.00746 0.96319 1.69660 1.35409 1.45813 1.06540 0.86173 0.84937 0.78029 0.77346 1.20513 1.21803 1.21865 1.20960 0.96197 0.98446 0.92964 1.21009 0.95821 0.95508 0.97785 1.21111 1.00366 0.95042 0.98079 1.20983 1.01684 0.99430 0.93118 1.20984 1.00393 0.96306 0.97142 1.21009 1.00124 0.94581 0.98156 1.22808 0.91780 0.94077 0.88508 1.67354 1.40465 0.98614 1.19959 0.88565 0.91852 0.92003 0.83555 0.82881 0.75312 0.91345 0.91253 0.77836 0.93398 0.85880 0.86860 0.87094 0.86999 0.86735 0.81369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.37 101.05 1.05 1.39 16 2 O -0.31 -3.58 10.46 -18.18 -0.19 -3.77 16 3 C 0.34 4.34 7.49 -16.96 -0.13 4.21 16 4 C -0.20 -2.27 10.02 -39.34 -0.39 -2.67 16 5 C 0.02 0.18 9.70 -38.92 -0.38 -0.19 16 6 C -0.22 -3.11 5.89 -104.82 -0.62 -3.72 16 7 C 0.57 9.07 7.77 -12.44 -0.10 8.97 16 8 O -0.55 -10.20 16.41 5.29 0.09 -10.12 16 9 N -0.71 -11.05 5.34 -61.33 -0.33 -11.37 16 10 C 0.12 1.96 5.21 -4.05 -0.02 1.94 16 11 C 0.20 3.48 2.65 -69.08 -0.18 3.29 16 12 H 0.07 1.15 7.94 -51.93 -0.41 0.74 16 13 N -0.71 -15.47 3.79 -54.55 -0.21 -15.68 16 14 C -0.24 -6.08 9.92 -15.06 -0.15 -6.23 16 15 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 16 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 17 N -0.93 -25.87 13.06 55.49 0.72 -25.14 16 18 Si 0.90 21.25 29.55 -169.99 -5.02 16.22 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 C -0.08 -1.43 4.92 -104.62 -0.52 -1.94 16 23 C -0.08 -1.49 9.33 -39.58 -0.37 -1.86 16 24 C -0.13 -2.03 10.05 -39.58 -0.40 -2.43 16 25 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 26 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 27 C -0.12 -1.87 9.67 -39.58 -0.38 -2.25 16 28 C 0.19 2.57 10.71 -17.14 -0.18 2.39 16 29 N -0.54 -7.57 9.18 -12.97 -0.12 -7.69 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.62 8.10 -51.92 -0.42 0.20 16 32 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 33 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.15 1.70 7.73 -52.49 -0.41 1.29 16 35 H 0.41 6.31 6.19 -40.82 -0.25 6.06 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.39 9.11 7.80 -40.82 -0.32 8.79 16 39 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.12 2.37 7.71 -52.49 -0.40 1.97 16 41 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 42 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 43 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 44 H 0.11 1.56 8.04 -52.49 -0.42 1.14 16 45 H 0.17 2.20 6.41 -52.49 -0.34 1.87 16 LS Contribution 389.23 15.07 5.87 5.87 Total: -1.00 -30.36 389.23 -8.75 -39.11 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: -5.90 Total: 16.50 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -3.66 Total: -3.92 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: 0.07 Total: -59.89 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.10 Total: -13.89 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.36 -8.75 -39.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732022131.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.920 kcal (2) G-P(sol) polarization free energy of solvation -30.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds