Wall clock time and date at job start Sat Apr 11 2020 06:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35494 * 117.00257 * 2 1 4 4 C 1.39166 * 119.52763 * 180.02562 * 3 2 1 5 5 C 1.37955 * 119.26416 * 179.97438 * 4 3 2 6 6 C 1.40278 * 118.36178 * 0.02562 * 5 4 3 7 7 C 1.47614 * 120.50514 * 179.97438 * 6 5 4 8 8 O 1.21587 * 119.99368 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00532 * 180.02562 * 7 6 5 10 10 C 1.46493 * 120.00405 * 179.97438 * 9 7 6 11 11 C 1.52994 * 109.47387 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47606 * 295.00254 * 11 10 9 13 13 N 1.46504 * 109.47248 * 55.00570 * 11 10 9 14 14 C 1.36937 * 119.99889 * 205.00589 * 13 11 10 15 15 H 1.07997 * 120.00258 * 359.97438 * 14 13 11 16 16 C 1.38812 * 119.99633 * 179.97438 * 14 13 11 17 17 N 1.31620 * 120.00397 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99768 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47406 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47068 * 119.99800 * 18 16 14 21 21 H 1.48498 * 109.47003 * 239.99991 * 18 16 14 22 22 C 1.50706 * 109.47287 * 175.00277 * 11 10 9 23 23 C 1.38230 * 119.99715 * 279.72652 * 22 11 10 24 24 C 1.38240 * 119.99729 * 179.78750 * 23 22 11 25 25 C 1.38234 * 120.00158 * 0.44105 * 24 23 22 26 26 C 1.38236 * 119.99620 * 359.81583 * 25 24 23 27 27 C 1.38234 * 119.99957 * 99.99851 * 22 11 10 28 28 C 1.39531 * 118.99845 * 0.02562 * 6 5 4 29 29 N 1.31662 * 120.62701 * 359.97438 * 28 6 5 30 30 H 1.08998 * 109.47723 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46976 * 300.00090 * 1 2 3 32 32 H 1.09005 * 109.47382 * 59.99420 * 1 2 3 33 33 H 1.08000 * 120.36905 * 0.02562 * 4 3 2 34 34 H 1.08002 * 120.82085 * 179.72833 * 5 4 3 35 35 H 0.96997 * 119.99705 * 0.02562 * 9 7 6 36 36 H 1.09001 * 109.47118 * 300.00572 * 10 9 7 37 37 H 1.09007 * 109.47046 * 60.00254 * 10 9 7 38 38 H 0.96999 * 119.99656 * 24.99092 * 13 11 10 39 39 H 0.97000 * 120.00320 * 180.02562 * 17 16 14 40 40 H 1.08001 * 120.00748 * 359.97438 * 23 22 11 41 41 H 1.08006 * 119.99689 * 180.27690 * 24 23 22 42 42 H 1.07993 * 119.99921 * 179.83545 * 25 24 23 43 43 H 1.08000 * 120.00114 * 179.97438 * 26 25 24 44 44 H 1.07994 * 120.00074 * 359.97438 * 27 22 11 45 45 H 1.08000 * 119.68362 * 179.97438 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2072 0.0000 4 6 3.4345 1.2685 -0.0005 5 6 4.0552 2.5006 -0.0011 6 6 3.2526 3.6511 -0.0005 7 6 3.8670 4.9933 -0.0005 8 8 5.0774 5.1077 -0.0014 9 7 3.0863 6.0919 0.0006 10 6 3.6960 7.4239 0.0012 11 6 2.5968 8.4880 0.0031 12 1 2.0328 8.4295 -0.9278 13 7 1.6959 8.2576 1.1352 14 6 0.4036 8.7078 1.0845 15 1 0.0487 9.2330 0.2101 16 6 -0.4501 8.4890 2.1569 17 7 -0.0176 7.8484 3.2223 18 14 -2.2127 9.1037 2.0881 19 1 -2.4481 9.7879 0.7913 20 1 -3.1434 7.9538 2.2177 21 1 -2.4477 10.0586 3.2008 22 6 3.2204 9.8543 0.1274 23 6 3.6197 10.3217 1.3656 24 6 4.1958 11.5732 1.4790 25 6 4.3643 12.3610 0.3557 26 6 3.9601 11.8957 -0.8817 27 6 3.3881 10.6424 -0.9958 28 6 1.8647 3.5076 0.0011 29 7 1.3139 2.3117 0.0016 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 4.0210 0.3617 -0.0014 34 1 5.1324 2.5775 0.0029 35 1 2.1206 6.0006 0.0017 36 1 4.3149 7.5397 0.8909 37 1 4.3140 7.5410 -0.8891 38 1 2.0148 7.7860 1.9205 39 1 -0.6143 7.6952 3.9716 40 1 3.4844 9.7079 2.2439 41 1 4.5118 11.9365 2.4458 42 1 4.8119 13.3397 0.4448 43 1 4.0913 12.5113 -1.7593 44 1 3.0725 10.2789 -1.9625 45 1 1.2362 4.3860 0.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732022131.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:20 Heat of formation + Delta-G solvation = -14.837125 kcal Electronic energy + Delta-G solvation = -28558.504561 eV Core-core repulsion = 24540.948830 eV Total energy + Delta-G solvation = -4017.555730 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.92642 -40.70899 -40.03772 -38.71284 -37.39184 -35.29408 -33.77099 -33.64204 -32.05477 -31.68134 -31.16712 -29.11050 -28.13585 -25.85984 -25.19228 -24.48058 -23.72570 -23.17857 -21.72444 -21.32932 -19.62860 -19.34480 -18.71402 -18.29070 -17.63273 -17.12980 -16.88188 -16.72516 -16.25118 -15.96871 -15.81592 -15.68593 -15.47774 -15.20356 -15.01751 -14.66390 -14.38511 -14.21405 -14.11228 -14.04201 -13.84479 -13.74874 -13.39361 -12.91695 -12.81383 -12.79130 -12.40778 -12.22002 -12.14182 -11.97990 -11.82203 -11.61977 -11.34125 -11.09217 -10.99301 -10.70250 -10.15314 -9.66477 -9.63111 -9.51254 -9.02089 -7.91390 -5.20490 -0.38951 0.10490 0.60473 0.66900 1.47866 1.50846 1.58078 1.77593 1.98644 2.16652 2.56996 2.73722 3.03850 3.11157 3.43291 3.64069 3.77836 3.80595 3.94634 4.03618 4.06978 4.18392 4.24040 4.36831 4.39407 4.41639 4.43350 4.43626 4.57515 4.66395 4.73028 4.78664 4.81722 4.85453 5.02286 5.06027 5.21865 5.25113 5.32797 5.41612 5.57471 5.71433 5.75487 5.95916 6.05283 6.26792 6.30072 6.49538 6.61724 7.13433 7.37370 8.04770 8.31279 9.30702 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009488 B = 0.003278 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2950.254679 B = 8538.443088 C =10912.531672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.308 6.308 3 C 0.328 3.672 4 C -0.189 4.189 5 C 0.016 3.984 6 C -0.233 4.233 7 C 0.567 3.433 8 O -0.578 6.578 9 N -0.705 5.705 10 C 0.132 3.868 11 C 0.203 3.797 12 H 0.073 0.927 13 N -0.719 5.719 14 C -0.227 4.227 15 H 0.075 0.925 16 C -0.061 4.061 17 N -0.962 5.962 18 Si 0.958 3.042 19 H -0.268 1.268 20 H -0.295 1.295 21 H -0.303 1.303 22 C -0.101 4.101 23 C -0.109 4.109 24 C -0.138 4.138 25 C -0.131 4.131 26 C -0.127 4.127 27 C -0.126 4.126 28 C 0.182 3.818 29 N -0.556 5.556 30 H 0.129 0.871 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.178 0.822 34 H 0.166 0.834 35 H 0.410 0.590 36 H 0.052 0.948 37 H 0.083 0.917 38 H 0.375 0.625 39 H 0.248 0.752 40 H 0.096 0.904 41 H 0.127 0.873 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.135 0.865 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.657 -7.604 -9.904 14.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.214 6.214 3 C 0.149 3.851 4 C -0.209 4.209 5 C -0.009 4.009 6 C -0.239 4.239 7 C 0.355 3.645 8 O -0.460 6.460 9 N -0.356 5.356 10 C 0.008 3.992 11 C 0.094 3.906 12 H 0.091 0.909 13 N -0.358 5.358 14 C -0.358 4.358 15 H 0.093 0.907 16 C -0.254 4.254 17 N -0.613 5.613 18 Si 0.789 3.211 19 H -0.192 1.192 20 H -0.223 1.223 21 H -0.231 1.231 22 C -0.104 4.104 23 C -0.128 4.128 24 C -0.156 4.156 25 C -0.149 4.149 26 C -0.144 4.144 27 C -0.144 4.144 28 C 0.024 3.976 29 N -0.280 5.280 30 H 0.147 0.853 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.195 0.805 34 H 0.183 0.817 35 H 0.248 0.752 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.208 0.792 39 H 0.057 0.943 40 H 0.114 0.886 41 H 0.145 0.855 42 H 0.161 0.839 43 H 0.164 0.836 44 H 0.153 0.847 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 6.497 -7.811 -9.980 14.242 hybrid contribution -0.984 0.509 1.007 1.497 sum 5.513 -7.303 -8.974 12.816 Atomic orbital electron populations 1.23135 0.75581 1.05012 1.02400 1.86200 1.24544 1.23855 1.86823 1.20453 0.90301 0.84914 0.89400 1.21298 0.91369 1.00230 1.08039 1.21691 1.01726 0.89449 0.88053 1.20748 0.95252 0.94416 1.13512 1.18103 0.86162 0.84464 0.75783 1.90729 1.14903 1.87610 1.52713 1.45849 1.11017 1.05365 1.73351 1.21479 0.95107 0.80704 1.01960 1.19567 0.89497 0.89172 0.92387 0.90878 1.42506 1.08611 1.67495 1.17200 1.19484 0.87770 1.28160 1.00435 0.90698 1.25311 1.01374 1.02184 0.96556 1.69796 1.36126 1.48140 1.07189 0.85299 0.81529 0.77075 0.77189 1.19244 1.22260 1.23054 1.20856 0.97592 0.98286 0.93685 1.20953 0.97963 0.96637 0.97253 1.21341 1.00112 0.94443 0.99656 1.21383 1.00642 1.00366 0.92512 1.21410 0.98754 0.95925 0.98353 1.21283 0.99942 0.94968 0.98232 1.22776 0.91760 0.94246 0.88833 1.67336 1.41096 0.98929 1.20663 0.85322 0.92815 0.92241 0.80481 0.81669 0.75192 0.92973 0.89871 0.79211 0.94285 0.88588 0.85541 0.83920 0.83607 0.84707 0.81504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.37 113.37 1.18 1.75 16 2 O -0.31 -6.73 10.46 -87.95 -0.92 -7.65 16 3 C 0.33 8.10 7.49 84.83 0.64 8.73 16 4 C -0.19 -3.95 10.02 22.43 0.22 -3.72 16 5 C 0.02 0.38 9.70 22.70 0.22 0.60 16 6 C -0.23 -6.57 5.89 -19.99 -0.12 -6.68 16 7 C 0.57 18.46 7.77 86.72 0.67 19.14 16 8 O -0.58 -21.65 16.41 -3.99 -0.07 -21.72 16 9 N -0.70 -22.52 5.34 -466.21 -2.49 -25.01 16 10 C 0.13 4.33 5.21 86.38 0.45 4.78 16 11 C 0.20 7.20 2.65 44.24 0.12 7.31 16 12 H 0.07 2.49 7.94 -2.39 -0.02 2.47 16 13 N -0.72 -31.89 3.79 -326.49 -1.24 -33.12 16 14 C -0.23 -11.36 9.92 84.03 0.83 -10.53 16 15 H 0.08 3.67 7.83 -2.91 -0.02 3.65 16 16 C -0.06 -3.28 5.50 84.86 0.47 -2.81 16 17 N -0.96 -55.40 13.06 21.65 0.28 -55.12 16 18 Si 0.96 44.23 29.55 68.60 2.03 46.25 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 21 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 22 C -0.10 -3.49 4.92 -19.87 -0.10 -3.58 16 23 C -0.11 -4.01 9.33 22.27 0.21 -3.80 16 24 C -0.14 -4.25 10.05 22.27 0.22 -4.02 16 25 C -0.13 -3.42 10.05 22.27 0.22 -3.19 16 26 C -0.13 -3.21 10.05 22.27 0.22 -2.98 16 27 C -0.13 -3.64 9.67 22.27 0.22 -3.42 16 28 C 0.18 5.09 10.71 85.03 0.91 6.00 16 29 N -0.56 -15.50 9.18 -307.82 -2.82 -18.32 16 30 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.05 1.03 8.10 -2.38 -0.02 1.01 16 32 H 0.06 1.05 8.10 -2.38 -0.02 1.03 16 33 H 0.18 2.54 8.06 -2.91 -0.02 2.52 16 34 H 0.17 3.46 7.73 -2.91 -0.02 3.43 16 35 H 0.41 13.03 6.19 -92.71 -0.57 12.46 16 36 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 38 H 0.38 18.46 7.80 -92.71 -0.72 17.73 16 39 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 40 H 0.10 3.95 7.71 -2.91 -0.02 3.92 16 41 H 0.13 3.43 8.06 -2.91 -0.02 3.41 16 42 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 43 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 44 H 0.14 3.28 8.04 -2.91 -0.02 3.25 16 45 H 0.17 4.56 6.41 -2.91 -0.02 4.54 16 Total: -1.00 -65.95 389.23 1.09 -64.85 By element: Atomic # 1 Polarization: 46.55 SS G_CDS: -0.27 Total: 46.28 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 6.59 Total: 3.55 kcal Atomic # 7 Polarization: -125.31 SS G_CDS: -6.27 Total: -131.58 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.99 Total: -29.37 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -65.95 1.09 -64.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732022131.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.015 kcal (2) G-P(sol) polarization free energy of solvation -65.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds