Wall clock time and date at job start Sat Apr 11 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 119.99694 * 2 1 4 4 H 1.48508 * 109.47095 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47390 * 300.00437 * 3 2 1 6 6 H 1.48500 * 109.47073 * 60.00627 * 3 2 1 7 7 C 1.38800 * 120.00550 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00394 * 180.02562 * 7 2 1 9 9 S 1.76208 * 119.99752 * 359.97438 * 7 2 1 10 10 C 1.80996 * 99.99867 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47044 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99857 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99952 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99620 * 179.97438 * 13 11 10 15 15 H 1.09003 * 109.52251 * 35.08627 * 14 13 11 16 16 C 1.53048 * 109.49316 * 155.16433 * 14 13 11 17 17 C 1.53034 * 109.53401 * 181.31730 * 16 14 13 18 18 C 1.53195 * 109.31691 * 298.63496 * 17 16 14 19 19 N 1.46927 * 108.77208 * 54.63792 * 18 17 16 20 20 C 1.34774 * 120.63136 * 126.37551 * 19 18 17 21 21 O 1.21584 * 120.00259 * 167.79571 * 20 19 18 22 22 N 1.34778 * 119.99723 * 347.79166 * 20 19 18 23 23 C 1.47021 * 125.65120 * 6.19871 * 22 20 19 24 24 C 1.54313 * 107.27929 * 180.96848 * 23 22 20 25 25 C 1.55164 * 102.86152 * 22.52814 * 24 23 22 26 26 C 1.47425 * 125.64569 * 186.50993 * 22 20 19 27 27 C 1.46928 * 118.73757 * 306.38851 * 19 18 17 28 28 H 0.96997 * 120.00469 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47424 * 59.99851 * 10 9 7 30 30 H 1.09003 * 109.47268 * 299.99702 * 10 9 7 31 31 H 0.96993 * 120.00054 * 0.02562 * 13 11 10 32 32 H 1.08997 * 109.45849 * 301.34069 * 16 14 13 33 33 H 1.08997 * 109.45719 * 61.31040 * 16 14 13 34 34 H 1.09006 * 109.49804 * 178.67913 * 17 16 14 35 35 H 1.09005 * 109.49975 * 58.58822 * 17 16 14 36 36 H 1.09000 * 109.58495 * 294.84675 * 18 17 16 37 37 H 1.09000 * 109.58722 * 174.42495 * 18 17 16 38 38 H 1.09003 * 109.88397 * 300.51781 * 23 22 20 39 39 H 1.09003 * 109.87802 * 61.67726 * 23 22 20 40 40 H 1.08994 * 110.92754 * 264.11350 * 24 23 22 41 41 H 1.09004 * 110.74269 * 140.85506 * 24 23 22 42 42 H 1.08993 * 111.00650 * 206.22761 * 25 24 23 43 43 H 1.08999 * 111.03331 * 82.39113 * 25 24 23 44 44 H 1.08996 * 110.36746 * 274.66804 * 26 22 20 45 45 H 1.09000 * 110.36612 * 36.99738 * 26 22 20 46 46 H 1.08997 * 109.58623 * 173.39901 * 27 19 18 47 47 H 1.09003 * 109.58717 * 293.82814 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9876 -5.3027 -0.0012 12 8 0.7914 -5.5023 -0.0011 13 7 2.8444 -6.3430 -0.0018 14 6 2.3307 -7.7150 -0.0019 15 1 1.4154 -7.7612 -0.5920 16 6 3.3775 -8.6523 -0.6085 17 6 2.8290 -10.0806 -0.6392 18 6 2.5380 -10.5426 0.7922 19 7 1.6448 -9.5668 1.4316 20 6 0.4901 -9.9637 2.0022 21 8 -0.1298 -9.1988 2.7156 22 7 0.0227 -11.2085 1.7821 23 6 0.7280 -12.2720 1.0520 24 6 -0.1984 -13.5060 1.0317 25 6 -1.6038 -12.8864 1.2516 26 6 -1.2834 -11.7271 2.2279 27 6 2.0342 -8.1501 1.4367 28 1 -0.4851 0.8400 0.0004 29 1 3.1246 -3.7313 0.8894 30 1 3.1246 -3.7313 -0.8906 31 1 3.8011 -6.1834 -0.0015 32 1 3.6085 -8.3301 -1.6238 33 1 4.2838 -8.6245 -0.0037 34 1 3.5657 -10.7437 -1.0928 35 1 1.9089 -10.1046 -1.2233 36 1 3.4709 -10.6061 1.3524 37 1 2.0556 -11.5198 0.7699 38 1 0.9372 -11.9463 0.0330 39 1 1.6588 -12.5180 1.5632 40 1 0.0509 -14.1933 1.8401 41 1 -0.1465 -14.0118 0.0675 42 1 -2.2812 -13.6071 1.7098 43 1 -2.0149 -12.5071 0.3161 44 1 -1.2147 -12.0998 3.2498 45 1 -2.0444 -10.9500 2.1568 46 1 1.2193 -7.5486 1.8397 47 1 2.9260 -8.0184 2.0495 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367498613.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:56 Heat of formation + Delta-G solvation = -20.092702 kcal Electronic energy + Delta-G solvation = -27727.309221 eV Core-core repulsion = 23844.969543 eV Total energy + Delta-G solvation = -3882.339678 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.13290 -39.46037 -38.02766 -37.29428 -34.62200 -32.55628 -32.39737 -31.87540 -30.79855 -29.55970 -28.06896 -26.14688 -25.45747 -23.51618 -23.08657 -21.83077 -21.00149 -20.30423 -19.82791 -17.83968 -17.58995 -16.89919 -16.36134 -16.25495 -15.92249 -15.45107 -15.03703 -14.77871 -14.67422 -14.52571 -14.13676 -14.01528 -13.95525 -13.66358 -13.24253 -13.21159 -12.97354 -12.87451 -12.65061 -12.54117 -12.14790 -12.09569 -11.64803 -11.60583 -11.32952 -11.21757 -11.04859 -10.98923 -10.81114 -10.71552 -10.50849 -10.08805 -9.77561 -9.39107 -9.24928 -9.04701 -8.94234 -8.47842 -8.18964 -6.46330 -6.18606 -3.88928 2.24899 2.98941 3.06257 3.12844 3.23691 3.29392 3.33674 3.46697 3.75349 3.99001 4.17628 4.22959 4.38406 4.48137 4.54683 4.57740 4.76135 4.80712 4.86359 4.94847 5.07787 5.14768 5.16426 5.20974 5.24153 5.27350 5.38827 5.42219 5.43006 5.49692 5.53606 5.63916 5.68048 5.72016 5.74072 5.86405 5.91923 6.00503 6.07139 6.16515 6.28567 6.64714 6.80325 7.62653 7.69917 7.72525 8.38354 8.42087 8.63855 9.26578 10.88850 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023023 B = 0.002146 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.863969 B =13043.968667 C =13835.837853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.072 3.928 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.511 6.511 13 N -0.734 5.734 14 C 0.135 3.865 15 H 0.090 0.910 16 C -0.126 4.126 17 C -0.130 4.130 18 C 0.037 3.963 19 N -0.621 5.621 20 C 0.725 3.275 21 O -0.575 6.575 22 N -0.638 5.638 23 C 0.093 3.907 24 C -0.136 4.136 25 C -0.134 4.134 26 C 0.124 3.876 27 C 0.121 3.879 28 H 0.268 0.732 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.399 0.601 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.138 0.862 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.100 0.900 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.340 -31.784 -0.542 32.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.303 4.303 11 C 0.317 3.683 12 O -0.384 6.384 13 N -0.388 5.388 14 C 0.028 3.972 15 H 0.108 0.892 16 C -0.164 4.164 17 C -0.169 4.169 18 C -0.085 4.085 19 N -0.358 5.358 20 C 0.429 3.571 21 O -0.451 6.451 22 N -0.378 5.378 23 C -0.029 4.029 24 C -0.174 4.174 25 C -0.173 4.173 26 C 0.001 3.999 27 C -0.003 4.003 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.233 0.767 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.155 0.845 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.118 0.882 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.844 -31.457 -0.110 31.828 hybrid contribution 2.697 1.440 -0.069 3.058 sum 7.541 -30.017 -0.178 30.951 Atomic orbital electron populations 1.70029 1.05945 1.27326 1.46939 1.25002 0.95029 0.99043 0.94599 0.86114 0.79560 0.81911 0.77877 1.19635 1.20597 1.20571 1.22908 0.94928 0.91660 1.58789 0.90883 1.85461 1.04857 0.96308 1.96695 1.23527 1.06591 0.95288 1.04923 1.20380 0.86607 0.86320 0.74974 1.90733 1.15303 1.85453 1.46903 1.45983 1.09932 1.04857 1.78029 1.21169 0.98348 0.81343 0.96296 0.89169 1.21795 0.98192 0.94628 1.01810 1.21865 1.01827 0.96325 0.96840 1.23489 0.95417 0.96359 0.93220 1.47026 1.20451 1.08102 1.60248 1.15405 0.80828 0.80542 0.80365 1.90978 1.59980 1.53052 1.41108 1.47547 1.19964 1.10722 1.59596 1.22341 0.95513 0.88071 0.96986 1.22741 0.94914 0.96532 1.03179 1.22814 0.96920 0.97301 1.00218 1.22086 0.84252 0.96031 0.97522 1.21915 1.01875 0.79929 0.96622 0.92244 0.89163 0.89227 0.76708 0.90798 0.91204 0.90281 0.91257 0.91808 0.84510 0.90362 0.90427 0.90346 0.89803 0.89598 0.90384 0.91618 0.90190 0.88173 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.64 13.22 55.49 0.73 -25.90 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.75 29.55 -169.99 -5.02 16.72 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.53 -15.48 9.50 30.94 0.29 -15.19 16 8 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 10 C -0.15 -3.14 6.16 36.01 0.22 -2.91 16 11 C 0.53 10.19 7.81 -10.98 -0.09 10.10 16 12 O -0.51 -12.11 15.53 5.56 0.09 -12.03 16 13 N -0.73 -9.94 5.08 -53.68 -0.27 -10.21 16 14 C 0.13 1.68 2.60 -67.81 -0.18 1.50 16 15 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 16 C -0.13 -1.02 5.35 -26.69 -0.14 -1.16 16 17 C -0.13 -0.84 5.93 -26.61 -0.16 -1.00 16 18 C 0.04 0.27 5.62 -3.71 -0.02 0.24 16 19 N -0.62 -7.41 2.97 -178.50 -0.53 -7.94 16 20 C 0.73 10.42 8.32 -86.92 -0.72 9.70 16 21 O -0.58 -11.15 16.16 5.29 0.09 -11.07 16 22 N -0.64 -6.49 3.33 -226.77 -0.75 -7.24 16 23 C 0.09 0.52 4.85 -3.07 -0.01 0.50 16 24 C -0.14 -0.50 6.95 -24.90 -0.17 -0.67 16 25 C -0.13 -0.68 7.08 -24.58 -0.17 -0.85 16 26 C 0.12 1.07 6.89 -2.53 -0.02 1.05 16 27 C 0.12 1.65 5.97 -3.71 -0.02 1.63 16 28 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 30 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 31 H 0.40 4.08 8.60 -40.82 -0.35 3.73 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.14 0.74 1.53 -110.78 -0.17 0.57 16 38 H 0.08 0.39 6.60 -51.93 -0.34 0.05 16 39 H 0.08 0.34 6.74 -51.93 -0.35 -0.01 16 40 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 46 H 0.10 1.83 7.12 -51.93 -0.37 1.46 16 47 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 384.50 15.07 5.79 5.79 Total: -1.00 -39.27 384.50 -10.82 -50.09 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -7.44 Total: 0.71 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -1.29 Total: 4.96 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -0.82 Total: -51.30 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: 0.17 Total: -23.09 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -39.27 -10.82 -50.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367498613.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.997 kcal (2) G-P(sol) polarization free energy of solvation -39.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds