Wall clock time and date at job start Sat Apr 11 2020 06:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48502 * 109.47002 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47091 * 299.99648 * 3 2 1 6 6 H 1.48497 * 109.47138 * 60.00475 * 3 2 1 7 7 C 1.37882 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99751 * 175.14207 * 7 2 1 9 9 C 1.50694 * 120.00284 * 355.41947 * 7 2 1 10 10 C 1.53006 * 115.55031 * 274.93190 * 9 7 2 11 11 N 1.46498 * 109.46847 * 294.81434 * 10 9 7 12 12 C 1.34777 * 119.99966 * 184.79711 * 11 10 9 13 13 O 1.21578 * 120.00188 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99704 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99719 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47293 * 179.97438 * 15 14 12 17 17 C 1.38283 * 119.93177 * 269.72848 * 16 15 14 18 18 C 1.38123 * 120.06379 * 179.72385 * 17 16 15 19 19 C 1.38832 * 119.93239 * 0.56828 * 18 17 16 20 20 N 1.40198 * 120.06673 * 179.72666 * 19 18 17 21 21 C 1.34725 * 126.84119 * 359.69050 * 20 19 18 22 22 N 1.30846 * 108.03274 * 179.89609 * 21 20 19 23 23 C 1.33267 * 109.84240 * 0.37409 * 22 21 20 24 24 N 1.30745 * 109.00133 * 359.76891 * 23 22 21 25 25 C 1.38832 * 119.86743 * 359.70407 * 19 18 17 26 26 C 1.38124 * 119.93439 * 0.02562 * 25 19 18 27 27 C 1.53003 * 117.49968 * 129.25877 * 9 7 2 28 28 C 1.52998 * 117.49915 * 60.59573 * 9 7 2 29 29 H 0.97001 * 119.99858 * 4.99879 * 1 2 3 30 30 H 1.08993 * 109.46787 * 54.81179 * 10 9 7 31 31 H 1.09000 * 109.46942 * 174.81567 * 10 9 7 32 32 H 0.97009 * 120.00281 * 4.79101 * 11 10 9 33 33 H 0.96996 * 120.00344 * 359.97438 * 14 12 11 34 34 H 1.08996 * 109.47160 * 299.99923 * 15 14 12 35 35 H 1.09003 * 109.47395 * 59.99840 * 15 14 12 36 36 H 1.08003 * 119.96779 * 359.97438 * 17 16 15 37 37 H 1.07998 * 120.03318 * 180.28986 * 18 17 16 38 38 H 1.08002 * 125.98077 * 0.03461 * 21 20 19 39 39 H 1.07998 * 125.49758 * 179.74666 * 23 22 21 40 40 H 1.08007 * 120.03546 * 179.97438 * 25 19 18 41 41 H 1.07999 * 119.96399 * 179.97438 * 26 25 19 42 42 H 1.08997 * 117.49622 * 359.97438 * 27 9 7 43 43 H 1.09000 * 117.49928 * 145.02150 * 27 9 7 44 44 H 1.08996 * 117.50254 * 214.97905 * 28 9 7 45 45 H 1.09005 * 117.49689 * 359.97438 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0817 -1.1958 -0.0787 9 6 1.2547 -2.4970 0.1053 10 6 0.9188 -2.9527 1.5268 11 7 2.1580 -3.2462 2.2511 12 6 2.1054 -3.7588 3.4965 13 8 1.0296 -3.9780 4.0187 14 7 3.2454 -4.0284 4.1629 15 6 3.1882 -4.5851 5.5168 16 6 4.5883 -4.7930 6.0340 17 6 5.2309 -5.9987 5.8202 18 6 6.5163 -6.1902 6.2881 19 6 7.1587 -5.1750 6.9839 20 7 8.4612 -5.3685 7.4651 21 6 9.2130 -6.4791 7.3371 22 7 10.3641 -6.2583 7.9188 23 6 10.3824 -5.0292 8.4336 24 7 9.2400 -4.4452 8.1818 25 6 6.5088 -3.9677 7.2020 26 6 5.2255 -3.7801 6.7268 27 6 1.5731 -3.5804 -0.9271 28 6 0.2453 -2.8219 -0.9976 29 1 -0.4850 0.8369 -0.0732 30 1 0.3751 -2.1615 2.0429 31 1 0.3015 -3.8500 1.4844 32 1 3.0164 -3.0718 1.8343 33 1 4.1037 -3.8539 3.7462 34 1 2.6575 -3.8940 6.1716 35 1 2.6637 -5.5403 5.4951 36 1 4.7288 -6.7898 5.2832 37 1 7.0194 -7.1303 6.1167 38 1 8.9181 -7.3911 6.8394 39 1 11.2075 -4.5871 8.9722 40 1 7.0058 -3.1763 7.7433 41 1 4.7194 -2.8413 6.8965 42 1 2.3246 -3.3505 -1.6824 43 1 1.5429 -4.6178 -0.5937 44 1 -0.6578 -3.3606 -0.7106 45 1 0.1233 -2.0929 -1.7988 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430420108.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:24 Heat of formation + Delta-G solvation = 118.011288 kcal Electronic energy + Delta-G solvation = -27574.478926 eV Core-core repulsion = 23594.976686 eV Total energy + Delta-G solvation = -3979.502240 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.77151 -40.09044 -39.22177 -36.82566 -35.52332 -33.73845 -33.25866 -32.13028 -31.97245 -31.31453 -30.35529 -26.95756 -25.79023 -24.86879 -23.95442 -23.36461 -21.65986 -21.34907 -21.17702 -20.35851 -19.41000 -18.90516 -17.91407 -16.61105 -16.30196 -16.27426 -15.82260 -15.74280 -15.36824 -14.92526 -14.65307 -14.62562 -14.36530 -14.08123 -13.96323 -13.78199 -13.41384 -13.26211 -12.91711 -12.66808 -12.58220 -11.91163 -11.79138 -11.58138 -11.47383 -11.25757 -11.02224 -10.95761 -10.59458 -10.53724 -10.37180 -10.25109 -9.82473 -9.53639 -9.49202 -9.05600 -8.94029 -8.79512 -8.50379 -8.25642 -8.02402 -6.09096 -4.18718 0.17037 0.82564 1.47972 1.69452 2.42161 3.01396 3.23129 3.32492 3.33843 3.46818 3.72792 3.74974 3.90962 4.27341 4.32977 4.33435 4.38579 4.52333 4.80479 4.86053 4.93796 5.04819 5.18942 5.35971 5.36396 5.50169 5.57068 5.61506 5.71082 5.88652 5.89491 6.01870 6.14849 6.17952 6.33420 6.46262 6.52220 6.57184 6.64945 6.69414 6.82830 7.11055 7.27619 7.39805 7.42097 7.49821 7.58588 7.79692 8.32513 8.59836 8.82732 9.13495 9.48395 10.98100 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014461 B = 0.002006 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.763545 B =13954.652943 C =14813.618637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.072 3.928 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.498 4.498 8 H 0.060 0.940 9 C 0.023 3.977 10 C 0.182 3.818 11 N -0.720 5.720 12 C 0.698 3.302 13 O -0.603 6.603 14 N -0.752 5.752 15 C 0.181 3.819 16 C -0.101 4.101 17 C -0.073 4.073 18 C -0.134 4.134 19 C 0.148 3.852 20 N -0.328 5.328 21 C 0.261 3.739 22 N -0.539 5.539 23 C 0.205 3.795 24 N -0.313 5.313 25 C -0.112 4.112 26 C -0.075 4.075 27 C -0.211 4.211 28 C -0.142 4.142 29 H 0.261 0.739 30 H 0.065 0.935 31 H 0.038 0.962 32 H 0.397 0.603 33 H 0.395 0.605 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.140 0.860 37 H 0.134 0.866 38 H 0.223 0.777 39 H 0.223 0.777 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.580 -12.788 14.043 24.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.132 4.132 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.536 4.536 8 H 0.078 0.922 9 C 0.022 3.978 10 C 0.059 3.941 11 N -0.372 5.372 12 C 0.398 3.602 13 O -0.483 6.483 14 N -0.409 5.409 15 C 0.057 3.943 16 C -0.102 4.102 17 C -0.092 4.092 18 C -0.155 4.155 19 C 0.056 3.944 20 N -0.112 5.112 21 C -0.034 4.034 22 N -0.264 5.264 23 C -0.097 4.097 24 N -0.139 5.139 25 C -0.132 4.132 26 C -0.094 4.094 27 C -0.248 4.248 28 C -0.180 4.180 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.230 0.770 33 H 0.228 0.772 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.157 0.843 37 H 0.151 0.849 38 H 0.239 0.761 39 H 0.240 0.760 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 14.483 -12.336 14.821 24.116 hybrid contribution 1.181 1.018 -0.527 1.646 sum 15.665 -11.318 14.294 24.037 Atomic orbital electron populations 1.70000 1.05856 1.26753 1.48403 1.24996 0.94829 0.98968 0.94365 0.86579 0.80125 0.83886 0.77637 1.19764 1.21048 1.20959 1.20369 0.92594 0.88560 1.52049 0.92230 1.19073 0.99424 0.93316 0.86000 1.20860 0.83212 0.97729 0.92340 1.45170 1.11338 1.66557 1.14135 1.16031 0.83766 0.78785 0.81621 1.90878 1.27821 1.60626 1.68942 1.45116 1.07899 1.71189 1.16703 1.19925 0.91386 0.99873 0.83104 1.20127 0.96717 0.94197 0.99205 1.20979 0.93187 0.97318 0.97724 1.20791 0.96031 0.98230 1.00458 1.17623 0.81228 0.96507 0.99087 1.47786 1.12014 1.11207 1.40204 1.26227 0.86932 0.93112 0.97143 1.70645 1.20547 1.17992 1.17262 1.26205 0.95922 0.89411 0.98161 1.78163 1.05388 1.14748 1.15574 1.20950 0.95105 0.96001 1.01107 1.21124 0.93525 0.99159 0.95624 1.23010 1.00697 0.95588 1.05487 1.22467 0.90806 1.01304 1.03403 0.92919 0.91696 0.94358 0.76951 0.77159 0.90684 0.90712 0.84253 0.84862 0.76059 0.76043 0.84259 0.84363 0.90458 0.91727 0.91778 0.89520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.02 12.65 55.43 0.70 -23.32 16 2 C 0.07 1.90 5.43 -17.82 -0.10 1.80 16 3 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.50 -12.59 8.59 -34.44 -0.30 -12.89 16 8 H 0.06 1.48 7.82 -52.48 -0.41 1.07 16 9 C 0.02 0.52 1.47 -155.66 -0.23 0.29 16 10 C 0.18 4.07 5.50 -4.04 -0.02 4.04 16 11 N -0.72 -13.54 5.48 -65.23 -0.36 -13.89 16 12 C 0.70 12.60 8.57 -86.91 -0.74 11.86 16 13 O -0.60 -13.25 16.34 5.30 0.09 -13.17 16 14 N -0.75 -9.65 5.55 -66.42 -0.37 -10.02 16 15 C 0.18 1.93 5.80 -5.20 -0.03 1.90 16 16 C -0.10 -0.84 5.25 -104.59 -0.55 -1.38 16 17 C -0.07 -0.50 9.69 -39.61 -0.38 -0.88 16 18 C -0.13 -0.85 9.47 -39.40 -0.37 -1.22 16 19 C 0.15 1.24 6.70 -83.59 -0.56 0.68 16 20 N -0.33 -2.96 3.82 -11.81 -0.05 -3.00 16 21 C 0.26 1.91 11.98 -90.37 -1.08 0.83 16 22 N -0.54 -4.88 11.19 -15.75 -0.18 -5.06 16 23 C 0.21 1.72 13.03 -91.76 -1.20 0.53 16 24 N -0.31 -3.17 12.06 29.30 0.35 -2.82 16 25 C -0.11 -0.97 9.68 -39.40 -0.38 -1.35 16 26 C -0.08 -0.62 9.69 -39.61 -0.38 -1.00 16 27 C -0.21 -4.31 9.96 -26.69 -0.27 -4.57 16 28 C -0.14 -3.21 9.14 -26.69 -0.24 -3.45 16 29 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 30 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 31 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 32 H 0.40 6.79 8.35 -40.82 -0.34 6.45 16 33 H 0.39 4.24 8.48 -40.82 -0.35 3.89 16 34 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 35 H 0.07 0.80 8.08 -51.93 -0.42 0.39 16 36 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 37 H 0.13 0.46 6.81 -52.49 -0.36 0.10 16 38 H 0.22 0.63 7.10 -52.49 -0.37 0.26 16 39 H 0.22 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.14 1.24 7.74 -52.48 -0.41 0.83 16 41 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 42 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 45 H 0.09 2.11 8.14 -51.93 -0.42 1.68 16 LS Contribution 391.66 15.07 5.90 5.90 Total: -1.00 -33.34 391.66 -11.78 -45.12 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -6.01 Total: 9.71 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -6.84 Total: -4.81 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: 0.11 Total: -58.11 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.09 Total: -13.17 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.34 -11.78 -45.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430420108.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.128 kcal (2) G-P(sol) polarization free energy of solvation -33.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds