Wall clock time and date at job start Sat Apr 11 2020 06:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48502 * 109.47002 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47091 * 299.99648 * 3 2 1 6 6 H 1.48497 * 109.47138 * 60.00475 * 3 2 1 7 7 C 1.37882 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99751 * 175.14207 * 7 2 1 9 9 C 1.50694 * 120.00284 * 355.41947 * 7 2 1 10 10 C 1.53006 * 115.55031 * 274.93190 * 9 7 2 11 11 N 1.46498 * 109.46847 * 294.81434 * 10 9 7 12 12 C 1.34777 * 119.99966 * 184.79711 * 11 10 9 13 13 O 1.21578 * 120.00188 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99704 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99719 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47293 * 179.97438 * 15 14 12 17 17 C 1.38283 * 119.93177 * 269.72848 * 16 15 14 18 18 C 1.38123 * 120.06379 * 179.72385 * 17 16 15 19 19 C 1.38832 * 119.93239 * 0.56828 * 18 17 16 20 20 N 1.40198 * 120.06673 * 179.72666 * 19 18 17 21 21 C 1.34725 * 126.84119 * 359.69050 * 20 19 18 22 22 N 1.30846 * 108.03274 * 179.89609 * 21 20 19 23 23 C 1.33267 * 109.84240 * 0.37409 * 22 21 20 24 24 N 1.30745 * 109.00133 * 359.76891 * 23 22 21 25 25 C 1.38832 * 119.86743 * 359.70407 * 19 18 17 26 26 C 1.38124 * 119.93439 * 0.02562 * 25 19 18 27 27 C 1.53003 * 117.49968 * 129.25877 * 9 7 2 28 28 C 1.52998 * 117.49915 * 60.59573 * 9 7 2 29 29 H 0.97001 * 119.99858 * 4.99879 * 1 2 3 30 30 H 1.08993 * 109.46787 * 54.81179 * 10 9 7 31 31 H 1.09000 * 109.46942 * 174.81567 * 10 9 7 32 32 H 0.97009 * 120.00281 * 4.79101 * 11 10 9 33 33 H 0.96996 * 120.00344 * 359.97438 * 14 12 11 34 34 H 1.08996 * 109.47160 * 299.99923 * 15 14 12 35 35 H 1.09003 * 109.47395 * 59.99840 * 15 14 12 36 36 H 1.08003 * 119.96779 * 359.97438 * 17 16 15 37 37 H 1.07998 * 120.03318 * 180.28986 * 18 17 16 38 38 H 1.08002 * 125.98077 * 0.03461 * 21 20 19 39 39 H 1.07998 * 125.49758 * 179.74666 * 23 22 21 40 40 H 1.08007 * 120.03546 * 179.97438 * 25 19 18 41 41 H 1.07999 * 119.96399 * 179.97438 * 26 25 19 42 42 H 1.08997 * 117.49622 * 359.97438 * 27 9 7 43 43 H 1.09000 * 117.49928 * 145.02150 * 27 9 7 44 44 H 1.08996 * 117.50254 * 214.97905 * 28 9 7 45 45 H 1.09005 * 117.49689 * 359.97438 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0817 -1.1958 -0.0787 9 6 1.2547 -2.4970 0.1053 10 6 0.9188 -2.9527 1.5268 11 7 2.1580 -3.2462 2.2511 12 6 2.1054 -3.7588 3.4965 13 8 1.0296 -3.9780 4.0187 14 7 3.2454 -4.0284 4.1629 15 6 3.1882 -4.5851 5.5168 16 6 4.5883 -4.7930 6.0340 17 6 5.2309 -5.9987 5.8202 18 6 6.5163 -6.1902 6.2881 19 6 7.1587 -5.1750 6.9839 20 7 8.4612 -5.3685 7.4651 21 6 9.2130 -6.4791 7.3371 22 7 10.3641 -6.2583 7.9188 23 6 10.3824 -5.0292 8.4336 24 7 9.2400 -4.4452 8.1818 25 6 6.5088 -3.9677 7.2020 26 6 5.2255 -3.7801 6.7268 27 6 1.5731 -3.5804 -0.9271 28 6 0.2453 -2.8219 -0.9976 29 1 -0.4850 0.8369 -0.0732 30 1 0.3751 -2.1615 2.0429 31 1 0.3015 -3.8500 1.4844 32 1 3.0164 -3.0718 1.8343 33 1 4.1037 -3.8539 3.7462 34 1 2.6575 -3.8940 6.1716 35 1 2.6637 -5.5403 5.4951 36 1 4.7288 -6.7898 5.2832 37 1 7.0194 -7.1303 6.1167 38 1 8.9181 -7.3911 6.8394 39 1 11.2075 -4.5871 8.9722 40 1 7.0058 -3.1763 7.7433 41 1 4.7194 -2.8413 6.8965 42 1 2.3246 -3.3505 -1.6824 43 1 1.5429 -4.6178 -0.5937 44 1 -0.6578 -3.3606 -0.7106 45 1 0.1233 -2.0929 -1.7988 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430420108.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:23 Heat of formation + Delta-G solvation = 98.997698 kcal Electronic energy + Delta-G solvation = -27575.303417 eV Core-core repulsion = 23594.976686 eV Total energy + Delta-G solvation = -3980.326731 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.35373 -41.08288 -40.29350 -38.53337 -36.43499 -34.95900 -34.57244 -33.92520 -32.71932 -31.90925 -31.15294 -28.30357 -27.39477 -26.27093 -24.52374 -24.09485 -22.91878 -22.23000 -21.96796 -21.77307 -21.21743 -19.48091 -19.30456 -18.16992 -17.23701 -16.92489 -16.89835 -16.68307 -16.49007 -16.35701 -15.98566 -15.67596 -15.26264 -15.16106 -15.03655 -14.72342 -14.52154 -14.36659 -14.02709 -13.95385 -13.51504 -13.38937 -13.21210 -12.90441 -12.85691 -12.63278 -12.32725 -12.07173 -11.99451 -11.90527 -11.44351 -11.24132 -11.20550 -11.00342 -10.92330 -10.43369 -10.27231 -10.09046 -10.01419 -9.56654 -9.42150 -8.08116 -6.21663 -0.42439 0.26725 0.87407 1.14665 1.40839 1.45089 1.53482 1.83202 1.92557 2.27775 2.42729 2.68718 3.20165 3.32657 3.36704 3.41769 3.61289 3.68878 3.76686 3.87688 3.98419 4.27429 4.28386 4.31641 4.51777 4.59121 4.65275 4.69114 4.74763 4.77840 4.94407 5.00265 5.02618 5.05939 5.08304 5.31223 5.32221 5.33331 5.51091 5.51708 5.59337 5.62268 5.66138 5.75555 5.80963 5.97445 6.17211 6.38916 6.86143 6.91864 7.25586 7.47762 7.70877 8.99021 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014461 B = 0.002006 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.763545 B =13954.652943 C =14813.618637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.022 3.978 3 Si 0.948 3.052 4 H -0.261 1.261 5 H -0.285 1.285 6 H -0.290 1.290 7 C -0.499 4.499 8 H 0.064 0.936 9 C 0.000 4.000 10 C 0.200 3.800 11 N -0.716 5.716 12 C 0.697 3.303 13 O -0.645 6.645 14 N -0.730 5.730 15 C 0.183 3.817 16 C -0.105 4.105 17 C -0.066 4.066 18 C -0.123 4.123 19 C 0.139 3.861 20 N -0.339 5.339 21 C 0.267 3.733 22 N -0.564 5.564 23 C 0.204 3.796 24 N -0.351 5.351 25 C -0.126 4.126 26 C -0.078 4.078 27 C -0.175 4.175 28 C -0.154 4.154 29 H 0.258 0.742 30 H 0.022 0.978 31 H 0.037 0.963 32 H 0.407 0.593 33 H 0.409 0.591 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.160 0.840 37 H 0.170 0.830 38 H 0.265 0.735 39 H 0.249 0.751 40 H 0.129 0.871 41 H 0.138 0.862 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.854 -14.811 13.917 27.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.178 4.178 3 Si 0.775 3.225 4 H -0.185 1.185 5 H -0.211 1.211 6 H -0.217 1.217 7 C -0.537 4.537 8 H 0.082 0.918 9 C 0.000 4.000 10 C 0.075 3.925 11 N -0.370 5.370 12 C 0.397 3.603 13 O -0.527 6.527 14 N -0.387 5.387 15 C 0.059 3.941 16 C -0.106 4.106 17 C -0.085 4.085 18 C -0.144 4.144 19 C 0.046 3.954 20 N -0.123 5.123 21 C -0.027 4.027 22 N -0.291 5.291 23 C -0.098 4.098 24 N -0.177 5.177 25 C -0.146 4.146 26 C -0.097 4.097 27 C -0.212 4.212 28 C -0.192 4.192 29 H 0.067 0.933 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.242 0.758 33 H 0.244 0.756 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.178 0.822 37 H 0.187 0.813 38 H 0.280 0.720 39 H 0.265 0.735 40 H 0.147 0.853 41 H 0.156 0.844 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.088 0.912 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 16.832 -14.368 14.702 26.569 hybrid contribution 0.536 1.576 -0.437 1.721 sum 17.368 -12.791 14.266 25.860 Atomic orbital electron populations 1.70121 1.07195 1.27147 1.50073 1.25704 0.95484 1.02031 0.94588 0.85660 0.79546 0.80296 0.77030 1.18502 1.21092 1.21657 1.20681 0.92908 0.89486 1.50638 0.91820 1.19105 1.00274 0.93988 0.86676 1.20385 0.84240 0.96054 0.91806 1.44935 1.10607 1.66880 1.14544 1.16164 0.84408 0.78432 0.81298 1.90851 1.29860 1.62276 1.69741 1.44973 1.06902 1.69726 1.17105 1.19990 0.93087 0.99495 0.81508 1.19891 0.95514 0.95145 1.00061 1.21209 0.93269 0.96938 0.97057 1.21122 0.95591 0.98878 0.98771 1.17881 0.81238 0.96895 0.99351 1.47861 1.12275 1.11588 1.40557 1.27094 0.86079 0.93629 0.95876 1.70679 1.21665 1.18388 1.18333 1.26810 0.96119 0.89300 0.97524 1.78119 1.06317 1.16227 1.17022 1.20914 0.95379 0.96449 1.01851 1.21110 0.93444 0.99381 0.95794 1.22989 0.98770 0.95939 1.03501 1.22391 0.92198 1.01833 1.02828 0.93282 0.95989 0.94499 0.75790 0.75558 0.91802 0.90352 0.82202 0.81306 0.71964 0.73491 0.85341 0.84417 0.89725 0.89277 0.91221 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.97 12.65 21.45 0.27 -50.70 16 2 C 0.02 1.18 5.43 84.66 0.46 1.64 16 3 Si 0.95 41.95 29.54 68.60 2.03 43.98 16 4 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 7 C -0.50 -25.01 8.59 25.60 0.22 -24.79 16 8 H 0.06 3.07 7.82 -2.91 -0.02 3.05 16 9 C 0.00 0.02 1.47 -52.93 -0.08 -0.06 16 10 C 0.20 9.00 5.50 86.38 0.48 9.47 16 11 N -0.72 -26.41 5.48 -478.54 -2.62 -29.04 16 12 C 0.70 24.71 8.57 179.05 1.53 26.24 16 13 O -0.64 -28.48 16.34 -3.96 -0.06 -28.54 16 14 N -0.73 -17.65 5.55 -482.31 -2.68 -20.33 16 15 C 0.18 3.66 5.80 85.63 0.50 4.15 16 16 C -0.10 -1.54 5.25 -19.85 -0.10 -1.64 16 17 C -0.07 -0.68 9.69 22.25 0.22 -0.46 16 18 C -0.12 -1.12 9.47 22.38 0.21 -0.91 16 19 C 0.14 2.06 6.70 38.09 0.26 2.31 16 20 N -0.34 -5.53 3.82 -191.27 -0.73 -6.26 16 21 C 0.27 3.21 11.98 180.26 2.16 5.37 16 22 N -0.56 -9.22 11.19 -203.73 -2.28 -11.50 16 23 C 0.20 3.22 13.03 180.75 2.35 5.58 16 24 N -0.35 -6.91 12.06 -61.21 -0.74 -7.65 16 25 C -0.13 -2.12 9.68 22.38 0.22 -1.90 16 26 C -0.08 -1.23 9.69 22.25 0.22 -1.01 16 27 C -0.17 -6.79 9.96 30.62 0.30 -6.48 16 28 C -0.15 -6.96 9.14 30.62 0.28 -6.68 16 29 H 0.26 13.98 8.32 -92.71 -0.77 13.21 16 30 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.04 1.65 8.09 -2.39 -0.02 1.63 16 32 H 0.41 13.26 8.35 -92.70 -0.77 12.49 16 33 H 0.41 7.85 8.48 -92.71 -0.79 7.07 16 34 H 0.06 1.45 8.08 -2.39 -0.02 1.43 16 35 H 0.08 1.56 8.08 -2.39 -0.02 1.54 16 36 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 37 H 0.17 0.27 6.81 -2.91 -0.02 0.25 16 38 H 0.26 0.34 7.10 -2.91 -0.02 0.32 16 39 H 0.25 1.97 8.06 -2.91 -0.02 1.94 16 40 H 0.13 2.38 7.74 -2.91 -0.02 2.36 16 41 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 42 H 0.08 3.17 8.14 -2.39 -0.02 3.16 16 43 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 44 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 45 H 0.06 3.16 8.14 -2.38 -0.02 3.14 16 Total: -1.00 -73.68 391.66 1.88 -71.80 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: -0.52 Total: 27.41 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 9.22 Total: 10.83 kcal Atomic # 7 Polarization: -116.69 SS G_CDS: -8.78 Total: -125.47 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.06 Total: -28.54 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -73.68 1.88 -71.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430420108.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.796 kcal (2) G-P(sol) polarization free energy of solvation -73.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds