Wall clock time and date at job start Sat Apr 11 2020 06:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 120.00148 * 2 1 4 4 H 1.48497 * 109.47116 * 271.59157 * 3 2 1 5 5 H 1.48503 * 109.47166 * 31.59225 * 3 2 1 6 6 H 1.48499 * 109.47152 * 151.59217 * 3 2 1 7 7 C 1.37877 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00202 * 359.27531 * 7 2 1 9 9 C 1.50700 * 119.99963 * 179.27876 * 7 2 1 10 10 C 1.53001 * 115.54897 * 87.76291 * 9 7 2 11 11 N 1.46505 * 109.47367 * 67.37099 * 10 9 7 12 12 C 1.34769 * 120.00028 * 175.39630 * 11 10 9 13 13 O 1.21580 * 120.00348 * 5.53985 * 12 11 10 14 14 N 1.34781 * 119.99730 * 185.54071 * 12 11 10 15 15 C 1.39945 * 119.99953 * 183.55412 * 14 12 11 16 16 C 1.38890 * 120.07139 * 333.58595 * 15 14 12 17 17 C 1.38088 * 119.92902 * 179.71935 * 16 15 14 18 18 C 1.38299 * 120.07070 * 0.30336 * 17 16 15 19 19 C 1.38256 * 120.14225 * 359.95013 * 18 17 16 20 20 C 1.38136 * 120.06841 * 0.02588 * 19 18 17 21 21 C 1.50698 * 120.03587 * 180.02562 * 20 19 18 22 22 N 1.46503 * 109.47294 * 265.00062 * 21 20 19 23 23 C 1.34425 * 126.82342 * 124.70529 * 22 21 20 24 24 N 1.30834 * 108.07621 * 179.89655 * 23 22 21 25 25 C 1.33246 * 109.82732 * 0.38241 * 24 23 22 26 26 N 1.30711 * 108.94880 * 359.76320 * 25 24 23 27 27 C 1.53002 * 117.49864 * 233.43089 * 9 7 2 28 28 C 1.52998 * 117.49953 * 302.09344 * 9 7 2 29 29 H 0.96998 * 119.99245 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.47484 * 307.37166 * 10 9 7 31 31 H 1.08999 * 109.47339 * 187.36662 * 10 9 7 32 32 H 0.97002 * 119.99817 * 355.39067 * 11 10 9 33 33 H 0.97000 * 119.99963 * 3.56114 * 14 12 11 34 34 H 1.07998 * 120.03117 * 359.97438 * 16 15 14 35 35 H 1.08006 * 119.96412 * 180.27488 * 17 16 15 36 36 H 1.08010 * 119.92964 * 179.97438 * 18 17 16 37 37 H 1.07999 * 119.96654 * 180.02562 * 19 18 17 38 38 H 1.09001 * 109.47329 * 25.00010 * 21 20 19 39 39 H 1.08997 * 109.47513 * 145.00021 * 21 20 19 40 40 H 1.08000 * 125.96393 * 0.04651 * 23 22 21 41 41 H 1.08001 * 125.52925 * 179.73081 * 25 24 23 42 42 H 1.08995 * 117.49771 * 215.00503 * 27 9 7 43 43 H 1.08996 * 117.49476 * 0.02562 * 27 9 7 44 44 H 1.09003 * 117.49646 * 359.97438 * 28 9 7 45 45 H 1.08995 * 117.50018 * 144.97081 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4631 2.0658 -1.3995 5 1 1.4640 2.6427 0.7335 6 1 3.5632 1.4306 0.6661 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0128 9 6 3.5115 -1.1942 -0.0159 10 6 4.1863 -1.1310 1.3558 11 7 3.9254 -2.3739 2.0862 12 6 4.5005 -2.5834 3.2868 13 8 5.1541 -1.7018 3.8100 14 7 4.3511 -3.7704 3.9077 15 6 4.8852 -3.9631 5.1868 16 6 5.9835 -3.2210 5.6015 17 6 6.5045 -3.4094 6.8663 18 6 5.9377 -4.3403 7.7176 19 6 4.8476 -5.0844 7.3060 20 6 4.3214 -4.9003 6.0421 21 6 3.1328 -5.7113 5.5944 22 7 3.5951 -6.8853 4.8498 23 6 3.3017 -8.1712 5.1098 24 7 3.9049 -8.9136 4.2172 25 6 4.5963 -8.1416 3.3798 26 7 4.4380 -6.8913 3.7264 27 6 4.2060 -2.0101 -1.1080 28 6 4.2054 -0.4810 -1.1781 29 1 -0.4849 0.8401 -0.0004 30 1 3.7865 -0.2878 1.9191 31 1 5.2612 -1.0046 1.2264 32 1 3.3385 -3.0460 1.7056 33 1 3.8735 -4.4910 3.4679 34 1 6.4270 -2.4944 4.9368 35 1 7.3558 -2.8294 7.1910 36 1 6.3473 -4.4862 8.7063 37 1 4.4070 -5.8104 7.9733 38 1 2.5644 -6.0348 6.4664 39 1 2.4975 -5.1011 4.9525 40 1 2.6752 -8.5288 5.9136 41 1 5.1916 -8.4921 2.5496 42 1 5.1437 -2.5019 -0.8493 43 1 3.5730 -2.5465 -1.8149 44 1 3.5719 -0.0120 -1.9310 45 1 5.1424 0.0336 -0.9654 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431193201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:27 Heat of formation + Delta-G solvation = 128.750677 kcal Electronic energy + Delta-G solvation = -29214.094857 eV Core-core repulsion = 25235.058312 eV Total energy + Delta-G solvation = -3979.036545 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.25062 -40.61485 -38.83062 -37.18874 -35.08479 -34.32633 -33.64182 -32.17449 -31.42456 -31.13008 -29.65184 -26.98817 -26.46635 -25.18675 -23.11805 -22.59684 -22.08697 -21.78941 -21.10275 -20.45646 -19.35576 -18.25915 -17.63146 -17.38860 -16.46005 -16.24319 -15.78629 -15.45816 -15.08926 -15.05555 -14.93583 -14.41095 -14.29247 -14.17352 -13.95162 -13.48138 -13.33710 -13.14531 -12.86808 -12.76146 -12.46957 -12.16790 -12.04712 -11.78230 -11.43683 -11.19917 -10.87897 -10.56043 -10.45925 -10.25158 -10.21306 -9.99120 -9.89721 -9.76666 -9.60298 -9.24365 -8.96311 -8.72670 -8.64101 -8.49913 -7.94514 -6.20632 -4.25796 1.01896 1.36664 1.46437 2.22768 2.79546 2.84167 3.25138 3.34300 3.35949 3.41200 3.81291 4.07264 4.12860 4.35715 4.38741 4.41383 4.68480 4.81263 4.87192 4.91328 5.03699 5.08241 5.09346 5.29988 5.49712 5.58841 5.61745 5.87759 5.97408 6.01001 6.01675 6.17258 6.17970 6.24137 6.29930 6.38326 6.41294 6.45223 6.55285 6.56154 6.65673 6.93256 7.00188 7.04183 7.06007 7.22192 7.62583 7.88848 8.27192 8.35639 8.78828 8.80522 9.42314 10.90609 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012144 B = 0.003161 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.193343 B = 8856.657264 C = 9903.720588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.080 3.920 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.257 1.257 7 C -0.492 4.492 8 H 0.077 0.923 9 C -0.017 4.017 10 C 0.174 3.826 11 N -0.711 5.711 12 C 0.699 3.301 13 O -0.583 6.583 14 N -0.682 5.682 15 C 0.220 3.780 16 C -0.140 4.140 17 C -0.086 4.086 18 C -0.155 4.155 19 C -0.079 4.079 20 C -0.161 4.161 21 C 0.171 3.829 22 N -0.375 5.375 23 C 0.253 3.747 24 N -0.549 5.549 25 C 0.199 3.801 26 N -0.315 5.315 27 C -0.178 4.178 28 C -0.191 4.191 29 H 0.266 0.734 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.402 0.598 33 H 0.410 0.590 34 H 0.158 0.842 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.114 0.886 39 H 0.097 0.903 40 H 0.217 0.783 41 H 0.215 0.785 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.512 -13.700 13.607 21.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.123 4.123 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.181 1.181 7 C -0.529 4.529 8 H 0.095 0.905 9 C -0.018 4.018 10 C 0.050 3.950 11 N -0.364 5.364 12 C 0.399 3.601 13 O -0.462 6.462 14 N -0.328 5.328 15 C 0.121 3.879 16 C -0.161 4.161 17 C -0.105 4.105 18 C -0.174 4.174 19 C -0.098 4.098 20 C -0.166 4.166 21 C 0.050 3.950 22 N -0.166 5.166 23 C -0.044 4.044 24 N -0.276 5.276 25 C -0.104 4.104 26 N -0.143 5.143 27 C -0.215 4.215 28 C -0.229 4.229 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.237 0.763 33 H 0.247 0.753 34 H 0.176 0.824 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.133 0.867 39 H 0.115 0.885 40 H 0.233 0.767 41 H 0.232 0.768 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.109 0.891 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.144 -12.395 13.565 20.524 hybrid contribution -0.380 0.329 -0.238 0.556 sum 8.764 -12.066 13.327 20.000 Atomic orbital electron populations 1.69888 1.06406 1.27313 1.49523 1.24974 0.94595 0.99187 0.93533 0.86837 0.80765 0.83221 0.78425 1.20404 1.22026 1.18073 1.20172 0.86017 0.94488 1.52218 0.90481 1.19617 0.95312 1.00968 0.85902 1.21100 0.97280 0.84370 0.92225 1.45085 1.50125 1.22909 1.18231 1.16010 0.80747 0.81844 0.81487 1.90805 1.45676 1.43753 1.65972 1.42831 1.58788 1.14680 1.16487 1.17371 0.91899 0.94905 0.83725 1.21766 0.95024 1.01405 0.97872 1.21162 0.99073 0.96821 0.93441 1.21004 0.97864 0.98347 1.00204 1.20703 0.96104 0.98736 0.94243 1.19327 1.00086 1.02013 0.95147 1.20620 0.94378 0.84056 0.95970 1.50774 1.36155 1.07297 1.22370 1.26056 0.98257 0.80944 0.99099 1.70542 1.15161 1.34691 1.07192 1.25987 0.98399 0.86508 0.99479 1.77989 1.12657 1.22110 1.01500 1.22844 1.01089 0.93072 1.04479 1.22956 1.01395 0.94940 1.03584 0.92444 0.91748 0.93580 0.76314 0.75254 0.82440 0.85803 0.86124 0.85982 0.86740 0.88525 0.76657 0.76838 0.90861 0.89387 0.89099 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.96 55.43 0.77 -25.38 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.13 24.81 -169.99 -4.22 16.92 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.26 -5.90 5.85 56.52 0.33 -5.57 16 7 C -0.49 -12.71 9.29 -34.44 -0.32 -13.03 16 8 H 0.08 2.15 8.06 -52.48 -0.42 1.73 16 9 C -0.02 -0.36 0.81 -155.66 -0.13 -0.49 16 10 C 0.17 3.60 5.10 -4.04 -0.02 3.58 16 11 N -0.71 -13.09 5.50 -65.22 -0.36 -13.45 16 12 C 0.70 12.62 8.44 -86.92 -0.73 11.89 16 13 O -0.58 -12.07 13.32 5.29 0.07 -12.00 16 14 N -0.68 -10.06 4.97 -14.23 -0.07 -10.13 16 15 C 0.22 3.07 6.42 -83.69 -0.54 2.53 16 16 C -0.14 -2.04 8.78 -39.40 -0.35 -2.39 16 17 C -0.09 -1.00 10.04 -39.61 -0.40 -1.40 16 18 C -0.16 -1.54 10.04 -39.55 -0.40 -1.94 16 19 C -0.08 -0.74 9.68 -39.61 -0.38 -1.13 16 20 C -0.16 -1.76 5.36 -104.44 -0.56 -2.32 16 21 C 0.17 1.43 6.01 -5.19 -0.03 1.39 16 22 N -0.38 -3.61 3.68 -63.81 -0.23 -3.85 16 23 C 0.25 2.11 12.63 -90.66 -1.14 0.97 16 24 N -0.55 -5.98 11.19 -15.83 -0.18 -6.15 16 25 C 0.20 2.16 13.03 -91.81 -1.20 0.97 16 26 N -0.31 -3.77 11.43 29.29 0.33 -3.43 16 27 C -0.18 -3.36 9.96 -26.69 -0.27 -3.62 16 28 C -0.19 -3.85 7.50 -26.69 -0.20 -4.05 16 29 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.06 1.48 6.94 -51.93 -0.36 1.12 16 31 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 32 H 0.40 6.96 8.43 -40.82 -0.34 6.62 16 33 H 0.41 5.53 6.43 -40.82 -0.26 5.27 16 34 H 0.16 2.65 5.60 -52.49 -0.29 2.35 16 35 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 36 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 37 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.11 0.51 8.00 -51.93 -0.42 0.10 16 39 H 0.10 0.87 7.27 -51.93 -0.38 0.49 16 40 H 0.22 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.22 1.69 8.06 -52.49 -0.42 1.26 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 44 H 0.09 1.92 7.15 -51.93 -0.37 1.55 16 45 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 376.44 15.07 5.67 5.67 Total: -1.00 -33.40 376.44 -10.82 -44.22 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -5.86 Total: 14.52 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -6.76 Total: -6.94 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: 0.27 Total: -62.40 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.07 Total: -12.00 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.22 Total: 16.92 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.40 -10.82 -44.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431193201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.971 kcal (2) G-P(sol) polarization free energy of solvation -33.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds