Wall clock time and date at job start Sat Apr 11 2020 06:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 120.00148 * 2 1 4 4 H 1.48497 * 109.47116 * 271.59157 * 3 2 1 5 5 H 1.48503 * 109.47166 * 31.59225 * 3 2 1 6 6 H 1.48499 * 109.47152 * 151.59217 * 3 2 1 7 7 C 1.37877 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00202 * 359.27531 * 7 2 1 9 9 C 1.50700 * 119.99963 * 179.27876 * 7 2 1 10 10 C 1.53001 * 115.54897 * 87.76291 * 9 7 2 11 11 N 1.46505 * 109.47367 * 67.37099 * 10 9 7 12 12 C 1.34769 * 120.00028 * 175.39630 * 11 10 9 13 13 O 1.21580 * 120.00348 * 5.53985 * 12 11 10 14 14 N 1.34781 * 119.99730 * 185.54071 * 12 11 10 15 15 C 1.39945 * 119.99953 * 183.55412 * 14 12 11 16 16 C 1.38890 * 120.07139 * 333.58595 * 15 14 12 17 17 C 1.38088 * 119.92902 * 179.71935 * 16 15 14 18 18 C 1.38299 * 120.07070 * 0.30336 * 17 16 15 19 19 C 1.38256 * 120.14225 * 359.95013 * 18 17 16 20 20 C 1.38136 * 120.06841 * 0.02588 * 19 18 17 21 21 C 1.50698 * 120.03587 * 180.02562 * 20 19 18 22 22 N 1.46503 * 109.47294 * 265.00062 * 21 20 19 23 23 C 1.34425 * 126.82342 * 124.70529 * 22 21 20 24 24 N 1.30834 * 108.07621 * 179.89655 * 23 22 21 25 25 C 1.33246 * 109.82732 * 0.38241 * 24 23 22 26 26 N 1.30711 * 108.94880 * 359.76320 * 25 24 23 27 27 C 1.53002 * 117.49864 * 233.43089 * 9 7 2 28 28 C 1.52998 * 117.49953 * 302.09344 * 9 7 2 29 29 H 0.96998 * 119.99245 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.47484 * 307.37166 * 10 9 7 31 31 H 1.08999 * 109.47339 * 187.36662 * 10 9 7 32 32 H 0.97002 * 119.99817 * 355.39067 * 11 10 9 33 33 H 0.97000 * 119.99963 * 3.56114 * 14 12 11 34 34 H 1.07998 * 120.03117 * 359.97438 * 16 15 14 35 35 H 1.08006 * 119.96412 * 180.27488 * 17 16 15 36 36 H 1.08010 * 119.92964 * 179.97438 * 18 17 16 37 37 H 1.07999 * 119.96654 * 180.02562 * 19 18 17 38 38 H 1.09001 * 109.47329 * 25.00010 * 21 20 19 39 39 H 1.08997 * 109.47513 * 145.00021 * 21 20 19 40 40 H 1.08000 * 125.96393 * 0.04651 * 23 22 21 41 41 H 1.08001 * 125.52925 * 179.73081 * 25 24 23 42 42 H 1.08995 * 117.49771 * 215.00503 * 27 9 7 43 43 H 1.08996 * 117.49476 * 0.02562 * 27 9 7 44 44 H 1.09003 * 117.49646 * 359.97438 * 28 9 7 45 45 H 1.08995 * 117.50018 * 144.97081 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4631 2.0658 -1.3995 5 1 1.4640 2.6427 0.7335 6 1 3.5632 1.4306 0.6661 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0128 9 6 3.5115 -1.1942 -0.0159 10 6 4.1863 -1.1310 1.3558 11 7 3.9254 -2.3739 2.0862 12 6 4.5005 -2.5834 3.2868 13 8 5.1541 -1.7018 3.8100 14 7 4.3511 -3.7704 3.9077 15 6 4.8852 -3.9631 5.1868 16 6 5.9835 -3.2210 5.6015 17 6 6.5045 -3.4094 6.8663 18 6 5.9377 -4.3403 7.7176 19 6 4.8476 -5.0844 7.3060 20 6 4.3214 -4.9003 6.0421 21 6 3.1328 -5.7113 5.5944 22 7 3.5951 -6.8853 4.8498 23 6 3.3017 -8.1712 5.1098 24 7 3.9049 -8.9136 4.2172 25 6 4.5963 -8.1416 3.3798 26 7 4.4380 -6.8913 3.7264 27 6 4.2060 -2.0101 -1.1080 28 6 4.2054 -0.4810 -1.1781 29 1 -0.4849 0.8401 -0.0004 30 1 3.7865 -0.2878 1.9191 31 1 5.2612 -1.0046 1.2264 32 1 3.3385 -3.0460 1.7056 33 1 3.8735 -4.4910 3.4679 34 1 6.4270 -2.4944 4.9368 35 1 7.3558 -2.8294 7.1910 36 1 6.3473 -4.4862 8.7063 37 1 4.4070 -5.8104 7.9733 38 1 2.5644 -6.0348 6.4664 39 1 2.4975 -5.1011 4.9525 40 1 2.6752 -8.5288 5.9136 41 1 5.1916 -8.4921 2.5496 42 1 5.1437 -2.5019 -0.8493 43 1 3.5730 -2.5465 -1.8149 44 1 3.5719 -0.0120 -1.9310 45 1 5.1424 0.0336 -0.9654 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431193201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:26 Heat of formation + Delta-G solvation = 108.465457 kcal Electronic energy + Delta-G solvation = -29214.974490 eV Core-core repulsion = 25235.058312 eV Total energy + Delta-G solvation = -3979.916178 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.96219 -41.80440 -39.97774 -38.78877 -36.02467 -35.32268 -35.14882 -34.23375 -32.17347 -31.92291 -30.67316 -28.40647 -27.56131 -26.93619 -24.11573 -23.48178 -23.31934 -22.77892 -21.98408 -21.71351 -21.09420 -19.47501 -18.91491 -18.19463 -18.03695 -17.27221 -16.96710 -16.71347 -16.46038 -16.27362 -15.90285 -15.69125 -15.39352 -15.07980 -14.95323 -14.85929 -14.73904 -14.33312 -14.24465 -13.97883 -13.76497 -13.56945 -13.10990 -12.80372 -12.72177 -12.62433 -12.28443 -12.20687 -11.99492 -11.62016 -11.58007 -11.07119 -11.01396 -10.96970 -10.74961 -10.70735 -10.60199 -10.39951 -10.04304 -9.83245 -8.99521 -8.32169 -6.39052 0.17420 0.45550 0.78414 1.32671 1.38901 1.48487 1.55548 1.57742 2.00603 2.08272 2.34934 2.88330 2.99842 3.04135 3.36428 3.42610 3.59213 3.69432 3.97004 4.02055 4.17940 4.18683 4.25525 4.33115 4.38506 4.45836 4.47651 4.48384 4.62976 4.68487 4.74354 4.83966 5.04708 5.06577 5.21644 5.26634 5.33157 5.39041 5.44877 5.49656 5.51546 5.54691 5.66907 5.67276 5.93946 5.97935 6.09881 6.25361 6.68800 6.91752 7.18506 7.31679 7.40727 8.82455 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012144 B = 0.003161 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.193343 B = 8856.657264 C = 9903.720588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.027 3.973 3 Si 0.930 3.070 4 H -0.266 1.266 5 H -0.302 1.302 6 H -0.241 1.241 7 C -0.480 4.480 8 H 0.043 0.957 9 C -0.039 4.039 10 C 0.185 3.815 11 N -0.712 5.712 12 C 0.697 3.303 13 O -0.613 6.613 14 N -0.669 5.669 15 C 0.185 3.815 16 C -0.170 4.170 17 C -0.095 4.095 18 C -0.149 4.149 19 C -0.072 4.072 20 C -0.157 4.157 21 C 0.169 3.831 22 N -0.379 5.379 23 C 0.265 3.735 24 N -0.578 5.578 25 C 0.191 3.809 26 N -0.353 5.353 27 C -0.153 4.153 28 C -0.189 4.189 29 H 0.265 0.735 30 H 0.037 0.963 31 H 0.058 0.942 32 H 0.406 0.594 33 H 0.415 0.585 34 H 0.125 0.875 35 H 0.137 0.863 36 H 0.153 0.847 37 H 0.165 0.835 38 H 0.164 0.836 39 H 0.084 0.916 40 H 0.265 0.735 41 H 0.230 0.770 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.588 -15.416 15.732 24.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.171 4.171 3 Si 0.756 3.244 4 H -0.191 1.191 5 H -0.230 1.230 6 H -0.164 1.164 7 C -0.517 4.517 8 H 0.061 0.939 9 C -0.040 4.040 10 C 0.061 3.939 11 N -0.365 5.365 12 C 0.398 3.602 13 O -0.494 6.494 14 N -0.316 5.316 15 C 0.088 3.912 16 C -0.191 4.191 17 C -0.114 4.114 18 C -0.168 4.168 19 C -0.091 4.091 20 C -0.161 4.161 21 C 0.048 3.952 22 N -0.169 5.169 23 C -0.031 4.031 24 N -0.306 5.306 25 C -0.112 4.112 26 N -0.181 5.181 27 C -0.190 4.190 28 C -0.226 4.226 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.241 0.759 33 H 0.254 0.746 34 H 0.143 0.857 35 H 0.155 0.845 36 H 0.171 0.829 37 H 0.182 0.818 38 H 0.182 0.818 39 H 0.103 0.897 40 H 0.280 0.720 41 H 0.246 0.754 42 H 0.118 0.882 43 H 0.104 0.896 44 H 0.099 0.901 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 10.243 -14.152 15.704 23.491 hybrid contribution -0.718 0.703 -0.784 1.274 sum 9.524 -13.449 14.920 22.231 Atomic orbital electron populations 1.70018 1.08087 1.27939 1.52273 1.25706 0.95111 1.02480 0.93786 0.86016 0.80134 0.79322 0.78947 1.19137 1.22972 1.16405 1.20330 0.88443 0.92872 1.50101 0.93853 1.19436 0.92985 1.04387 0.87220 1.20803 0.97484 0.84382 0.91277 1.44975 1.50537 1.22418 1.18561 1.16123 0.80359 0.82524 0.81240 1.90796 1.46869 1.45081 1.66642 1.42608 1.58521 1.13498 1.16951 1.17689 0.92844 0.96843 0.83829 1.21627 0.96363 1.02108 0.99010 1.21377 0.99651 0.97706 0.92657 1.21432 0.97453 0.96863 1.01006 1.21227 0.95345 0.98628 0.93877 1.19644 1.00416 1.00851 0.95183 1.20859 0.93359 0.83632 0.97332 1.50775 1.36077 1.08088 1.21986 1.26979 0.97096 0.80027 0.98967 1.70560 1.16241 1.35567 1.08212 1.26387 0.98424 0.86418 0.99937 1.77935 1.14237 1.22867 1.03100 1.22858 1.01443 0.92632 1.02060 1.23029 1.01820 0.95980 1.01808 0.92627 0.94508 0.92412 0.75899 0.74639 0.85725 0.84496 0.82915 0.81752 0.81824 0.89735 0.71997 0.75426 0.88173 0.89611 0.90134 0.88199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.11 13.96 21.45 0.30 -56.82 16 2 C 0.03 1.53 5.47 84.65 0.46 1.99 16 3 Si 0.93 43.92 24.81 68.60 1.70 45.62 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 6 H -0.24 -10.66 5.85 99.48 0.58 -10.08 16 7 C -0.48 -25.39 9.29 25.60 0.24 -25.16 16 8 H 0.04 2.53 8.06 -2.91 -0.02 2.50 16 9 C -0.04 -1.67 0.81 -52.93 -0.04 -1.71 16 10 C 0.19 7.66 5.10 86.38 0.44 8.10 16 11 N -0.71 -26.78 5.50 -478.53 -2.63 -29.42 16 12 C 0.70 26.05 8.44 179.06 1.51 27.56 16 13 O -0.61 -26.47 13.32 -3.97 -0.05 -26.52 16 14 N -0.67 -20.28 4.97 -317.18 -1.58 -21.86 16 15 C 0.18 5.17 6.42 38.15 0.24 5.42 16 16 C -0.17 -5.11 8.78 22.39 0.20 -4.91 16 17 C -0.10 -2.14 10.04 22.25 0.22 -1.92 16 18 C -0.15 -2.47 10.04 22.29 0.22 -2.25 16 19 C -0.07 -1.07 9.68 22.25 0.22 -0.85 16 20 C -0.16 -3.08 5.36 -19.74 -0.11 -3.18 16 21 C 0.17 2.33 6.01 85.63 0.51 2.84 16 22 N -0.38 -6.40 3.68 -355.80 -1.31 -7.71 16 23 C 0.26 3.55 12.63 180.36 2.28 5.83 16 24 N -0.58 -11.51 11.19 -204.00 -2.28 -13.79 16 25 C 0.19 4.01 13.03 180.76 2.36 6.36 16 26 N -0.35 -8.19 11.43 -61.24 -0.70 -8.89 16 27 C -0.15 -5.50 9.96 30.62 0.30 -5.20 16 28 C -0.19 -7.24 7.50 30.62 0.23 -7.01 16 29 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 30 H 0.04 1.71 6.94 -2.38 -0.02 1.69 16 31 H 0.06 2.25 8.08 -2.39 -0.02 2.23 16 32 H 0.41 14.45 8.43 -92.71 -0.78 13.67 16 33 H 0.42 11.47 6.43 -92.71 -0.60 10.87 16 34 H 0.13 4.51 5.60 -2.91 -0.02 4.50 16 35 H 0.14 2.55 8.06 -2.91 -0.02 2.52 16 36 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 37 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 38 H 0.16 0.59 8.00 -2.39 -0.02 0.57 16 39 H 0.08 1.40 7.27 -2.39 -0.02 1.38 16 40 H 0.26 0.50 8.06 -2.91 -0.02 0.48 16 41 H 0.23 3.56 8.06 -2.91 -0.02 3.53 16 42 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 43 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 44 H 0.08 3.28 7.15 -2.39 -0.02 3.26 16 45 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 Total: -1.00 -77.18 376.44 2.28 -74.91 By element: Atomic # 1 Polarization: 39.01 SS G_CDS: -0.46 Total: 38.55 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 9.29 Total: 5.91 kcal Atomic # 7 Polarization: -130.28 SS G_CDS: -8.20 Total: -138.48 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.05 Total: -26.52 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.70 Total: 45.62 kcal Total: -77.18 2.28 -74.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431193201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.373 kcal (2) G-P(sol) polarization free energy of solvation -77.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds