Wall clock time and date at job start Sat Apr 11 2020 06:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00265 * 2 1 4 4 H 1.48496 * 109.47245 * 270.00041 * 3 2 1 5 5 H 1.48501 * 109.47084 * 30.00000 * 3 2 1 6 6 H 1.48498 * 109.47415 * 149.99924 * 3 2 1 7 7 C 1.37875 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00100 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00264 * 180.02562 * 7 2 1 10 10 C 1.53037 * 109.46013 * 180.02562 * 9 7 2 11 11 C 1.53191 * 109.30955 * 181.37350 * 10 9 7 12 12 N 1.46925 * 108.89481 * 305.29162 * 11 10 9 13 13 C 1.34775 * 120.63054 * 233.67861 * 12 11 10 14 14 O 1.21594 * 120.00120 * 174.74180 * 13 12 11 15 15 N 1.34779 * 120.00159 * 354.73327 * 13 12 11 16 16 C 1.40012 * 120.00075 * 185.34926 * 15 13 12 17 17 C 1.38886 * 120.00648 * 214.48150 * 16 15 13 18 18 C 1.38029 * 119.99771 * 179.78940 * 17 16 15 19 19 C 1.38849 * 120.00120 * 0.46593 * 18 17 16 20 20 N 1.40319 * 119.99266 * 179.76317 * 19 18 17 21 21 C 1.36096 * 125.94377 * 0.02870 * 20 19 18 22 22 C 1.35386 * 106.05343 * 179.97438 * 21 20 19 23 23 N 1.33763 * 106.53632 * 359.97438 * 22 21 20 24 24 N 1.28616 * 109.05749 * 359.73584 * 23 22 21 25 25 C 1.38841 * 120.01110 * 359.79036 * 19 18 17 26 26 C 1.38030 * 120.00601 * 359.97438 * 25 19 18 27 27 C 1.47202 * 118.55420 * 53.53843 * 12 11 10 28 28 C 1.53042 * 109.44675 * 300.06650 * 9 7 2 29 29 H 0.96998 * 119.99841 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.45574 * 60.03052 * 9 7 2 31 31 H 1.08999 * 109.50031 * 61.41879 * 10 9 7 32 32 H 1.09000 * 109.52318 * 301.33457 * 10 9 7 33 33 H 1.09004 * 109.58802 * 65.15289 * 11 10 9 34 34 H 1.08998 * 109.58732 * 185.43228 * 11 10 9 35 35 H 0.97001 * 119.99716 * 5.35691 * 15 13 12 36 36 H 1.08004 * 119.99938 * 0.02645 * 17 16 15 37 37 H 1.08001 * 120.00092 * 180.23514 * 18 17 16 38 38 H 1.07997 * 126.97411 * 0.02562 * 21 20 19 39 39 H 1.07999 * 126.73671 * 179.97438 * 22 21 20 40 40 H 1.08000 * 119.99875 * 179.97438 * 25 19 18 41 41 H 1.07996 * 120.00515 * 179.97438 * 26 25 19 42 42 H 1.08997 * 109.53526 * 186.67441 * 27 12 11 43 43 H 1.09001 * 109.67603 * 66.37259 * 27 12 11 44 44 H 1.08997 * 109.49626 * 298.56469 * 28 9 7 45 45 H 1.08995 * 109.49925 * 58.66382 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0213 -2.6371 0.0010 11 6 5.5528 -2.6333 0.0362 12 7 6.0524 -1.8198 -1.0805 13 6 6.9463 -2.3261 -1.9530 14 8 7.2799 -1.6784 -2.9264 15 7 7.4705 -3.5505 -1.7463 16 6 8.4805 -4.0308 -2.5887 17 6 8.5428 -5.3836 -2.8970 18 6 9.5360 -5.8563 -3.7309 19 6 10.4784 -4.9809 -4.2538 20 7 11.4909 -5.4625 -5.0976 21 6 11.6624 -6.7568 -5.4817 22 6 12.7500 -6.7671 -6.2879 23 7 13.1838 -5.5037 -6.3582 24 7 12.4150 -4.7556 -5.6485 25 6 10.4195 -3.6294 -3.9415 26 6 9.4236 -3.1555 -3.1115 27 6 5.5531 -0.4427 -1.2264 28 6 4.0216 -0.4714 -1.2478 29 1 -0.4850 0.8400 -0.0004 30 1 3.8743 -0.6806 0.8914 31 1 3.6794 -3.1437 -0.9015 32 1 3.6386 -3.1587 0.8782 33 1 5.8956 -2.2086 0.9798 34 1 5.9231 -3.6539 -0.0609 35 1 7.1480 -4.0989 -1.0141 36 1 7.8119 -6.0651 -2.4873 37 1 9.5822 -6.9076 -3.9737 38 1 11.0539 -7.6037 -5.2010 39 1 13.1826 -7.6267 -6.7781 40 1 11.1529 -2.9488 -4.3480 41 1 9.3780 -2.1043 -2.8683 42 1 5.9236 -0.0176 -2.1592 43 1 5.8959 0.1628 -0.3874 44 1 3.6798 -0.9988 -2.1383 45 1 3.6390 0.5491 -1.2594 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541973499.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:48 Heat of formation + Delta-G solvation = 123.000653 kcal Electronic energy + Delta-G solvation = -28516.103481 eV Core-core repulsion = 24536.817597 eV Total energy + Delta-G solvation = -3979.285885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.72035 -41.02089 -39.42580 -37.47289 -35.68467 -34.12738 -33.42359 -32.03391 -31.57347 -31.03649 -30.74945 -29.10931 -26.59888 -24.50212 -24.17819 -23.26456 -22.76301 -22.12013 -21.54449 -20.48367 -19.35323 -19.03933 -18.42792 -17.45515 -16.81502 -16.77852 -16.01822 -15.73354 -15.43188 -15.12967 -14.82724 -14.66967 -14.31870 -14.18458 -13.93456 -13.66794 -13.52232 -13.22907 -13.13118 -12.86840 -12.54609 -12.36832 -12.25183 -12.02218 -11.79327 -11.45864 -11.32755 -11.10688 -10.90517 -10.34340 -10.29128 -10.19792 -10.11158 -9.85343 -9.81282 -9.49536 -9.44374 -9.19126 -8.63737 -8.52367 -8.19394 -6.16964 -4.17225 0.24520 0.86704 1.61023 1.92462 2.21368 2.42070 2.95400 3.19318 3.27984 3.32112 3.39848 3.66165 3.98104 4.16606 4.31050 4.37294 4.56288 4.73180 4.76039 4.84863 4.93714 5.04688 5.12809 5.25297 5.35428 5.38653 5.42381 5.50798 5.63607 5.68594 5.70781 5.83669 5.86459 5.98390 6.02706 6.08380 6.12097 6.31616 6.37362 6.50853 6.52778 6.61509 6.71998 6.90779 7.03735 7.36475 7.63989 7.73684 8.11754 8.39167 8.40278 8.85994 9.44757 10.96155 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.033731 B = 0.001993 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.888066 B =14047.151908 C =14462.116791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.885 3.115 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.265 1.265 7 C -0.516 4.516 8 H 0.073 0.927 9 C 0.015 3.985 10 C -0.114 4.114 11 C 0.106 3.894 12 N -0.611 5.611 13 C 0.705 3.295 14 O -0.577 6.577 15 N -0.690 5.690 16 C 0.193 3.807 17 C -0.133 4.133 18 C -0.091 4.091 19 C 0.087 3.913 20 N -0.232 5.232 21 C -0.052 4.052 22 C -0.047 4.047 23 N -0.269 5.269 24 N -0.080 5.080 25 C -0.074 4.074 26 C -0.103 4.103 27 C 0.124 3.876 28 C -0.136 4.136 29 H 0.264 0.736 30 H 0.029 0.971 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.410 0.590 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.193 0.807 39 H 0.194 0.806 40 H 0.145 0.855 41 H 0.150 0.850 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.642 -14.753 -3.702 25.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.554 4.554 8 H 0.091 0.909 9 C -0.004 4.004 10 C -0.152 4.152 11 C -0.017 4.017 12 N -0.347 5.347 13 C 0.407 3.593 14 O -0.454 6.454 15 N -0.339 5.339 16 C 0.096 3.904 17 C -0.154 4.154 18 C -0.112 4.112 19 C -0.005 4.005 20 N -0.020 5.020 21 C -0.201 4.201 22 C -0.203 4.203 23 N -0.134 5.134 24 N -0.059 5.059 25 C -0.095 4.095 26 C -0.124 4.124 27 C 0.001 3.999 28 C -0.174 4.174 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.249 0.751 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.210 0.790 39 H 0.211 0.789 40 H 0.162 0.838 41 H 0.168 0.832 42 H 0.104 0.896 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 21.282 -12.688 -4.531 25.188 hybrid contribution -0.563 -0.559 0.482 0.929 sum 20.718 -13.247 -4.049 24.923 Atomic orbital electron populations 1.69891 1.06316 1.27056 1.50393 1.25041 0.94718 0.99117 0.94382 0.86877 0.79929 0.83628 0.77997 1.20427 1.22405 1.18986 1.20999 0.88612 0.94492 1.51309 0.90859 1.19122 0.96949 0.91294 0.92991 1.21840 0.91032 1.00222 1.02126 1.21882 0.97310 0.93325 0.89153 1.47454 1.43330 1.15556 1.28331 1.15789 0.79769 0.80786 0.82909 1.90932 1.65140 1.60018 1.29311 1.42972 1.39125 1.18243 1.33608 1.17681 0.87860 0.92474 0.92393 1.20721 1.00002 0.94376 1.00323 1.20579 0.93722 0.99282 0.97650 1.17603 0.90743 0.94379 0.97747 1.44753 1.19924 1.06435 1.30848 1.23830 1.03353 0.88644 1.04254 1.23652 0.96853 0.96983 1.02820 1.75129 1.20582 1.02192 1.15521 1.78387 0.97694 1.20554 1.09254 1.20851 0.98804 0.92743 0.97076 1.21163 0.91902 1.01435 0.97908 1.21791 0.96072 0.79736 1.02253 1.22394 0.91655 1.01254 1.02076 0.92570 0.95290 0.92116 0.91042 0.91137 0.91801 0.75111 0.84095 0.84457 0.78985 0.78914 0.83753 0.83204 0.89606 0.91833 0.91583 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.53 13.96 55.43 0.77 -25.76 16 2 C 0.07 1.90 5.45 -17.82 -0.10 1.81 16 3 Si 0.89 20.79 24.38 -169.99 -4.14 16.65 16 4 H -0.28 -6.40 6.86 56.52 0.39 -6.01 16 5 H -0.30 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.26 -5.80 6.53 56.52 0.37 -5.43 16 7 C -0.52 -13.49 9.14 -34.44 -0.31 -13.80 16 8 H 0.07 2.08 7.99 -52.48 -0.42 1.66 16 9 C 0.02 0.32 1.66 -91.73 -0.15 0.17 16 10 C -0.11 -1.87 5.30 -26.61 -0.14 -2.01 16 11 C 0.11 1.32 6.38 -3.71 -0.02 1.30 16 12 N -0.61 -8.99 2.98 -178.27 -0.53 -9.52 16 13 C 0.71 10.29 8.03 -86.92 -0.70 9.59 16 14 O -0.58 -10.23 13.56 5.28 0.07 -10.16 16 15 N -0.69 -7.34 5.25 -14.20 -0.07 -7.41 16 16 C 0.19 1.98 6.25 -83.64 -0.52 1.46 16 17 C -0.13 -1.00 9.96 -39.42 -0.39 -1.40 16 18 C -0.09 -0.66 9.45 -39.43 -0.37 -1.03 16 19 C 0.09 0.84 6.68 -83.52 -0.56 0.28 16 20 N -0.23 -2.40 3.56 -10.45 -0.04 -2.44 16 21 C -0.05 -0.39 10.92 -16.68 -0.18 -0.57 16 22 C -0.05 -0.39 12.05 -17.73 -0.21 -0.60 16 23 N -0.27 -3.29 12.39 30.24 0.37 -2.92 16 24 N -0.08 -1.03 12.41 60.35 0.75 -0.28 16 25 C -0.07 -0.79 9.61 -39.43 -0.38 -1.17 16 26 C -0.10 -1.16 8.64 -39.42 -0.34 -1.51 16 27 C 0.12 2.06 6.45 -3.56 -0.02 2.04 16 28 C -0.14 -2.70 4.85 -26.61 -0.13 -2.83 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.03 0.61 7.20 -51.93 -0.37 0.24 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.57 5.64 -51.93 -0.29 0.27 16 35 H 0.41 3.19 6.31 -40.82 -0.26 2.93 16 36 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 37 H 0.14 0.56 6.76 -52.49 -0.35 0.20 16 38 H 0.19 0.57 7.10 -52.49 -0.37 0.20 16 39 H 0.19 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.14 1.51 7.69 -52.49 -0.40 1.11 16 41 H 0.15 1.90 6.52 -52.49 -0.34 1.56 16 42 H 0.09 1.46 7.01 -51.93 -0.36 1.09 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.06 1.27 3.24 -51.93 -0.17 1.10 16 LS Contribution 360.40 15.07 5.43 5.43 Total: -1.00 -34.03 360.40 -7.42 -41.44 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.49 Total: 3.21 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -4.54 Total: -8.25 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: 1.25 Total: -48.32 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.07 Total: -10.16 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.14 Total: 16.65 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.03 -7.42 -41.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541973499.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.445 kcal (2) G-P(sol) polarization free energy of solvation -34.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds