Wall clock time and date at job start Sat Apr 11 2020 06:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00265 * 2 1 4 4 H 1.48496 * 109.47245 * 270.00041 * 3 2 1 5 5 H 1.48501 * 109.47084 * 30.00000 * 3 2 1 6 6 H 1.48498 * 109.47415 * 149.99924 * 3 2 1 7 7 C 1.37875 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00100 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00264 * 180.02562 * 7 2 1 10 10 C 1.53037 * 109.46013 * 180.02562 * 9 7 2 11 11 C 1.53191 * 109.30955 * 181.37350 * 10 9 7 12 12 N 1.46925 * 108.89481 * 305.29162 * 11 10 9 13 13 C 1.34775 * 120.63054 * 233.67861 * 12 11 10 14 14 O 1.21594 * 120.00120 * 174.74180 * 13 12 11 15 15 N 1.34779 * 120.00159 * 354.73327 * 13 12 11 16 16 C 1.40012 * 120.00075 * 185.34926 * 15 13 12 17 17 C 1.38886 * 120.00648 * 214.48150 * 16 15 13 18 18 C 1.38029 * 119.99771 * 179.78940 * 17 16 15 19 19 C 1.38849 * 120.00120 * 0.46593 * 18 17 16 20 20 N 1.40319 * 119.99266 * 179.76317 * 19 18 17 21 21 C 1.36096 * 125.94377 * 0.02870 * 20 19 18 22 22 C 1.35386 * 106.05343 * 179.97438 * 21 20 19 23 23 N 1.33763 * 106.53632 * 359.97438 * 22 21 20 24 24 N 1.28616 * 109.05749 * 359.73584 * 23 22 21 25 25 C 1.38841 * 120.01110 * 359.79036 * 19 18 17 26 26 C 1.38030 * 120.00601 * 359.97438 * 25 19 18 27 27 C 1.47202 * 118.55420 * 53.53843 * 12 11 10 28 28 C 1.53042 * 109.44675 * 300.06650 * 9 7 2 29 29 H 0.96998 * 119.99841 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.45574 * 60.03052 * 9 7 2 31 31 H 1.08999 * 109.50031 * 61.41879 * 10 9 7 32 32 H 1.09000 * 109.52318 * 301.33457 * 10 9 7 33 33 H 1.09004 * 109.58802 * 65.15289 * 11 10 9 34 34 H 1.08998 * 109.58732 * 185.43228 * 11 10 9 35 35 H 0.97001 * 119.99716 * 5.35691 * 15 13 12 36 36 H 1.08004 * 119.99938 * 0.02645 * 17 16 15 37 37 H 1.08001 * 120.00092 * 180.23514 * 18 17 16 38 38 H 1.07997 * 126.97411 * 0.02562 * 21 20 19 39 39 H 1.07999 * 126.73671 * 179.97438 * 22 21 20 40 40 H 1.08000 * 119.99875 * 179.97438 * 25 19 18 41 41 H 1.07996 * 120.00515 * 179.97438 * 26 25 19 42 42 H 1.08997 * 109.53526 * 186.67441 * 27 12 11 43 43 H 1.09001 * 109.67603 * 66.37259 * 27 12 11 44 44 H 1.08997 * 109.49626 * 298.56469 * 28 9 7 45 45 H 1.08995 * 109.49925 * 58.66382 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0213 -2.6371 0.0010 11 6 5.5528 -2.6333 0.0362 12 7 6.0524 -1.8198 -1.0805 13 6 6.9463 -2.3261 -1.9530 14 8 7.2799 -1.6784 -2.9264 15 7 7.4705 -3.5505 -1.7463 16 6 8.4805 -4.0308 -2.5887 17 6 8.5428 -5.3836 -2.8970 18 6 9.5360 -5.8563 -3.7309 19 6 10.4784 -4.9809 -4.2538 20 7 11.4909 -5.4625 -5.0976 21 6 11.6624 -6.7568 -5.4817 22 6 12.7500 -6.7671 -6.2879 23 7 13.1838 -5.5037 -6.3582 24 7 12.4150 -4.7556 -5.6485 25 6 10.4195 -3.6294 -3.9415 26 6 9.4236 -3.1555 -3.1115 27 6 5.5531 -0.4427 -1.2264 28 6 4.0216 -0.4714 -1.2478 29 1 -0.4850 0.8400 -0.0004 30 1 3.8743 -0.6806 0.8914 31 1 3.6794 -3.1437 -0.9015 32 1 3.6386 -3.1587 0.8782 33 1 5.8956 -2.2086 0.9798 34 1 5.9231 -3.6539 -0.0609 35 1 7.1480 -4.0989 -1.0141 36 1 7.8119 -6.0651 -2.4873 37 1 9.5822 -6.9076 -3.9737 38 1 11.0539 -7.6037 -5.2010 39 1 13.1826 -7.6267 -6.7781 40 1 11.1529 -2.9488 -4.3480 41 1 9.3780 -2.1043 -2.8683 42 1 5.9236 -0.0176 -2.1592 43 1 5.8959 0.1628 -0.3874 44 1 3.6798 -0.9988 -2.1383 45 1 3.6390 0.5491 -1.2594 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541973499.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:47 Heat of formation + Delta-G solvation = 99.743153 kcal Electronic energy + Delta-G solvation = -28517.112002 eV Core-core repulsion = 24536.817597 eV Total energy + Delta-G solvation = -3980.294406 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.40488 -42.00670 -40.30254 -38.72825 -36.58817 -35.49068 -34.58465 -33.31044 -32.68987 -32.03083 -31.68166 -29.96627 -28.15739 -25.43111 -24.88252 -24.62278 -24.01649 -22.89768 -22.38221 -21.70368 -20.51496 -19.70765 -19.49482 -18.83306 -18.37855 -17.48868 -17.08399 -16.68211 -16.42344 -16.22174 -15.94871 -15.52317 -15.33224 -15.18487 -14.98160 -14.87631 -14.61474 -14.43531 -14.17238 -14.02983 -13.92237 -13.70423 -13.47715 -12.95162 -12.84936 -12.55935 -12.30347 -12.19865 -12.13010 -12.02193 -11.77756 -11.47545 -11.46710 -11.13248 -11.07121 -10.94650 -10.65672 -10.45264 -10.15853 -9.70205 -9.03812 -8.29056 -6.32413 -0.45678 0.20667 0.92386 1.27276 1.32139 1.35839 1.42869 1.49094 1.55790 1.93631 2.32632 2.64799 2.70603 3.06959 3.40535 3.60894 3.75341 3.91494 3.96200 4.04864 4.12245 4.20226 4.22056 4.23779 4.29702 4.37211 4.44624 4.54192 4.57567 4.72938 4.74922 4.80348 4.88214 4.96378 5.00545 5.05739 5.13973 5.17450 5.27966 5.31995 5.39069 5.56639 5.59954 5.67910 5.73876 5.86535 5.90102 6.31639 6.75307 6.75883 7.33357 7.33900 7.41519 8.87546 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.033731 B = 0.001993 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.888066 B =14047.151908 C =14462.116791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.008 3.992 3 Si 0.944 3.056 4 H -0.274 1.274 5 H -0.303 1.303 6 H -0.234 1.234 7 C -0.515 4.515 8 H 0.035 0.965 9 C 0.012 3.988 10 C -0.110 4.110 11 C 0.112 3.888 12 N -0.615 5.615 13 C 0.704 3.296 14 O -0.614 6.614 15 N -0.672 5.672 16 C 0.175 3.825 17 C -0.115 4.115 18 C -0.076 4.076 19 C 0.078 3.922 20 N -0.239 5.239 21 C -0.036 4.036 22 C -0.055 4.055 23 N -0.306 5.306 24 N -0.131 5.131 25 C -0.090 4.090 26 C -0.119 4.119 27 C 0.132 3.868 28 C -0.131 4.131 29 H 0.263 0.737 30 H 0.035 0.965 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.426 0.574 36 H 0.179 0.821 37 H 0.182 0.818 38 H 0.243 0.757 39 H 0.228 0.772 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.046 0.954 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.646 -17.940 -2.930 29.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.189 4.189 3 Si 0.772 3.228 4 H -0.201 1.201 5 H -0.231 1.231 6 H -0.157 1.157 7 C -0.553 4.553 8 H 0.053 0.947 9 C -0.007 4.007 10 C -0.148 4.148 11 C -0.010 4.010 12 N -0.350 5.350 13 C 0.406 3.594 14 O -0.494 6.494 15 N -0.323 5.323 16 C 0.078 3.922 17 C -0.136 4.136 18 C -0.096 4.096 19 C -0.014 4.014 20 N -0.027 5.027 21 C -0.184 4.184 22 C -0.211 4.211 23 N -0.171 5.171 24 N -0.108 5.108 25 C -0.110 4.110 26 C -0.140 4.140 27 C 0.009 3.991 28 C -0.169 4.169 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.126 0.874 35 H 0.268 0.732 36 H 0.196 0.804 37 H 0.199 0.801 38 H 0.259 0.741 39 H 0.245 0.755 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.065 0.935 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 23.336 -15.914 -3.737 28.491 hybrid contribution -1.214 0.235 0.182 1.250 sum 22.122 -15.678 -3.555 27.346 Atomic orbital electron populations 1.70055 1.08306 1.27857 1.53028 1.25918 0.95387 1.03099 0.94481 0.85911 0.79733 0.78839 0.78359 1.20071 1.23122 1.15735 1.21419 0.91750 0.92764 1.49370 0.94716 1.19129 0.93296 0.94747 0.93527 1.21734 0.94246 0.96906 1.01914 1.21979 0.93990 0.95755 0.89238 1.47420 1.43542 1.15049 1.29005 1.15918 0.79624 0.81624 0.82232 1.90919 1.66274 1.61354 1.30882 1.42680 1.38663 1.16904 1.34067 1.17879 0.87607 0.93615 0.93088 1.21105 1.00172 0.93289 0.99073 1.21049 0.91852 1.00844 0.95895 1.17856 0.91303 0.94340 0.97872 1.44919 1.19568 1.07473 1.30704 1.24684 1.02930 0.88469 1.02361 1.24377 0.97187 0.96581 1.02997 1.75068 1.21544 1.04202 1.16275 1.78374 0.99354 1.21835 1.11280 1.20751 0.98796 0.93748 0.97744 1.20983 0.93182 1.00722 0.99124 1.21557 0.93290 0.81489 1.02786 1.22229 0.94300 0.99792 1.00566 0.92781 0.94646 0.93457 0.90252 0.89107 0.87352 0.73213 0.80389 0.80102 0.74061 0.75533 0.85251 0.85652 0.90285 0.90062 0.93520 0.93719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.38 13.96 21.45 0.30 -58.08 16 2 C 0.01 0.44 5.45 84.65 0.46 0.90 16 3 Si 0.94 43.15 24.38 68.60 1.67 44.83 16 4 H -0.27 -12.27 6.86 99.48 0.68 -11.59 16 5 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.23 -9.43 6.53 99.48 0.65 -8.78 16 7 C -0.51 -27.49 9.14 25.60 0.23 -27.25 16 8 H 0.03 2.06 7.99 -2.91 -0.02 2.03 16 9 C 0.01 0.48 1.66 -11.51 -0.02 0.46 16 10 C -0.11 -3.37 5.30 30.67 0.16 -3.21 16 11 C 0.11 2.36 6.38 86.36 0.55 2.91 16 12 N -0.61 -16.53 2.98 -836.19 -2.50 -19.02 16 13 C 0.70 19.21 8.03 179.05 1.44 20.65 16 14 O -0.61 -21.68 13.56 -4.01 -0.05 -21.73 16 15 N -0.67 -12.19 5.25 -317.08 -1.67 -13.85 16 16 C 0.17 3.14 6.25 38.15 0.24 3.38 16 17 C -0.12 -1.20 9.96 22.38 0.22 -0.97 16 18 C -0.08 -0.73 9.45 22.37 0.21 -0.52 16 19 C 0.08 1.35 6.68 38.07 0.25 1.61 16 20 N -0.24 -4.52 3.56 -186.96 -0.67 -5.19 16 21 C -0.04 -0.39 10.92 83.37 0.91 0.52 16 22 C -0.05 -0.77 12.05 83.74 1.01 0.24 16 23 N -0.31 -7.42 12.39 -58.24 -0.72 -8.14 16 24 N -0.13 -3.38 12.41 37.02 0.46 -2.93 16 25 C -0.09 -1.94 9.61 22.36 0.21 -1.72 16 26 C -0.12 -2.69 8.64 22.38 0.19 -2.50 16 27 C 0.13 4.17 6.45 86.31 0.56 4.73 16 28 C -0.13 -5.09 4.85 30.67 0.15 -4.94 16 29 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 30 H 0.04 1.41 7.20 -2.39 -0.02 1.40 16 31 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.09 1.64 8.14 -2.39 -0.02 1.63 16 34 H 0.11 1.33 5.64 -2.39 -0.01 1.32 16 35 H 0.43 4.58 6.31 -92.71 -0.58 4.00 16 36 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16 37 H 0.18 0.14 6.76 -2.91 -0.02 0.12 16 38 H 0.24 -0.16 7.10 -2.91 -0.02 -0.18 16 39 H 0.23 1.18 8.06 -2.91 -0.02 1.16 16 40 H 0.13 3.04 7.69 -2.91 -0.02 3.02 16 41 H 0.13 3.40 6.52 -2.91 -0.02 3.38 16 42 H 0.08 2.63 7.01 -2.39 -0.02 2.61 16 43 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.04 1.87 3.24 -2.39 -0.01 1.86 16 Total: -1.00 -82.13 360.40 4.00 -78.13 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 0.38 Total: 11.71 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: 6.79 Total: -5.73 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -4.79 Total: -107.21 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.05 Total: -21.73 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.67 Total: 44.83 kcal Total: -82.13 4.00 -78.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541973499.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.876 kcal (2) G-P(sol) polarization free energy of solvation -82.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds