Wall clock time and date at job start Sat Apr 11 2020 06:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86809 * 120.00210 * 2 1 4 4 H 1.48494 * 109.47054 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46883 * 300.00086 * 3 2 1 6 6 H 1.48493 * 109.46637 * 60.00237 * 3 2 1 7 7 C 1.39942 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00245 * 197.85790 * 7 2 1 9 9 C 1.41394 * 119.99871 * 17.85402 * 7 2 1 10 10 C 1.40711 * 120.24676 * 24.37867 * 9 7 2 11 11 C 1.37622 * 119.74842 * 180.02562 * 10 9 7 12 12 C 1.38628 * 120.24667 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.75184 * 179.97438 * 12 11 10 14 14 N 1.46503 * 109.47161 * 89.99575 * 13 12 11 15 15 C 1.34779 * 120.00064 * 179.97438 * 14 13 12 16 16 O 1.21587 * 120.00116 * 0.02562 * 15 14 13 17 17 N 1.34769 * 119.99860 * 180.02562 * 15 14 13 18 18 C 1.47025 * 125.64994 * 0.02951 * 17 15 14 19 19 C 1.54324 * 107.26916 * 178.89172 * 18 17 15 20 20 C 1.55152 * 102.94823 * 337.80669 * 19 18 17 21 21 H 1.09004 * 111.00672 * 277.43071 * 20 19 18 22 22 C 1.50701 * 111.00913 * 153.60992 * 20 19 18 23 23 N 1.33243 * 125.52534 * 119.99849 * 22 20 19 24 24 C 1.30827 * 109.82997 * 180.02562 * 23 22 20 25 25 N 1.34432 * 108.07764 * 0.02562 * 24 23 22 26 26 H 0.96998 * 126.82252 * 179.97438 * 25 24 23 27 27 N 1.30713 * 125.52642 * 299.70217 * 22 20 19 28 28 C 1.47430 * 125.64659 * 179.97438 * 17 15 14 29 29 C 1.38637 * 120.50219 * 0.25357 * 12 11 10 30 30 C 1.37616 * 120.24810 * 359.44387 * 29 12 11 31 31 H 0.97000 * 119.99494 * 359.97438 * 1 2 3 32 32 H 1.08004 * 120.12806 * 0.04402 * 10 9 7 33 33 H 1.07995 * 119.87514 * 179.97438 * 11 10 9 34 34 H 1.09002 * 109.47007 * 330.00444 * 13 12 11 35 35 H 1.09000 * 109.47923 * 210.00359 * 13 12 11 36 36 H 0.96997 * 119.99990 * 0.02562 * 14 13 12 37 37 H 1.08999 * 109.87871 * 59.47930 * 18 17 15 38 38 H 1.08994 * 109.87994 * 298.30780 * 18 17 15 39 39 H 1.09004 * 110.72055 * 96.17584 * 19 18 17 40 40 H 1.09005 * 110.71760 * 219.26505 * 19 18 17 41 41 H 1.08001 * 125.96582 * 179.97438 * 24 23 22 42 42 H 1.08998 * 110.36553 * 85.33800 * 28 17 15 43 43 H 1.09000 * 110.36573 * 323.01538 * 28 17 15 44 44 H 1.08006 * 119.87868 * 179.70605 * 29 12 11 45 45 H 1.08005 * 120.12837 * 180.27600 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8836 2.3963 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0489 -1.2346 0.2863 9 6 1.3520 -2.4068 -0.3765 10 6 0.2207 -2.3616 -1.2120 11 6 -0.4102 -3.5308 -1.5711 12 6 0.0647 -4.7498 -1.1125 13 6 -0.6350 -6.0232 -1.5122 14 7 -0.0460 -6.5357 -2.7519 15 6 -0.5154 -7.6735 -3.3011 16 8 -1.4281 -8.2744 -2.7679 17 7 0.0268 -8.1451 -4.4412 18 6 1.1299 -7.5221 -5.1872 19 6 1.4290 -8.4254 -6.4022 20 6 0.8579 -9.7994 -5.9628 21 1 1.5702 -10.3364 -5.3364 22 6 0.4625 -10.6274 -7.1583 23 7 0.9635 -11.8213 -7.4730 24 6 0.4037 -12.2623 -8.5701 25 7 -0.4824 -11.3408 -8.9858 26 1 -1.0477 -11.3912 -9.7724 27 7 -0.4314 -10.2934 -8.0515 28 6 -0.3873 -9.3718 -5.1463 29 6 1.1751 -4.8059 -0.2842 30 6 1.8254 -3.6499 0.0827 31 1 -0.4849 0.8401 0.0004 32 1 -0.1511 -1.4130 -1.5703 33 1 -1.2789 -3.4985 -2.2119 34 1 -1.6945 -5.8215 -1.6698 35 1 -0.5199 -6.7647 -0.7216 36 1 0.6823 -6.0565 -3.1771 37 1 2.0129 -7.4505 -4.5522 38 1 0.8336 -6.5297 -5.5270 39 1 0.9139 -8.0598 -7.2906 40 1 2.5026 -8.4899 -6.5797 41 1 0.6169 -13.2023 -9.0574 42 1 -1.2242 -9.1623 -5.8125 43 1 -0.6565 -10.1484 -4.4303 44 1 1.5336 -5.7608 0.0710 45 1 2.6928 -3.6962 0.7244 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576939027.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:11 Heat of formation + Delta-G solvation = 56.886971 kcal Electronic energy + Delta-G solvation = -27766.432058 eV Core-core repulsion = 23784.279269 eV Total energy + Delta-G solvation = -3982.152789 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.11258 -41.29811 -39.59460 -38.67991 -36.29915 -35.11345 -34.23244 -32.94674 -32.05291 -31.36206 -31.13482 -29.92538 -28.45037 -25.86867 -24.65478 -23.86314 -22.90367 -22.87706 -21.82144 -20.98505 -20.81087 -19.39097 -19.22999 -19.14999 -17.51231 -17.15393 -16.97686 -16.36007 -16.29220 -16.03831 -15.89957 -15.60461 -15.34254 -15.06463 -14.57954 -14.37959 -14.24842 -14.04981 -13.82300 -13.81219 -13.42083 -13.27482 -13.10988 -12.92468 -12.74055 -12.73306 -12.54355 -12.37739 -12.13096 -11.85373 -11.49721 -11.38755 -11.27470 -11.07500 -11.05157 -11.02143 -10.63807 -10.19549 -9.52216 -9.38670 -9.28281 -8.66259 -6.35922 0.64833 0.81626 1.15025 1.39303 1.42742 1.54659 1.66625 1.83202 1.88586 2.11777 2.20676 2.68096 3.06600 3.16328 3.44799 3.61621 3.76344 3.85795 4.01886 4.17777 4.23535 4.24425 4.33481 4.40533 4.53902 4.61010 4.68087 4.73588 4.78535 4.85099 4.94720 5.05874 5.13149 5.15888 5.20682 5.27239 5.34126 5.36558 5.44062 5.53865 5.69795 5.90450 6.05496 6.09823 6.22125 6.27349 6.36924 6.68954 6.92665 6.97508 7.02406 7.10512 7.53036 8.30565 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023833 B = 0.001794 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.576623 B =15603.844178 C =16083.208125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.035 3.965 3 Si 0.982 3.018 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.267 1.267 7 C -0.495 4.495 8 H 0.078 0.922 9 C 0.086 3.914 10 C -0.191 4.191 11 C -0.081 4.081 12 C -0.227 4.227 13 C 0.213 3.787 14 N -0.724 5.724 15 C 0.716 3.284 16 O -0.639 6.639 17 N -0.637 5.637 18 C 0.095 3.905 19 C -0.104 4.104 20 C -0.003 4.003 21 H 0.118 0.882 22 C 0.230 3.770 23 N -0.577 5.577 24 C 0.278 3.722 25 N -0.475 5.475 26 H 0.458 0.542 27 N -0.338 5.338 28 C 0.142 3.858 29 C -0.066 4.066 30 C -0.241 4.241 31 H 0.289 0.711 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.405 0.595 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.112 0.888 41 H 0.273 0.727 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.116 0.884 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.235 -18.878 -19.951 27.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.180 1.180 5 H -0.189 1.189 6 H -0.192 1.192 7 C -0.524 4.524 8 H 0.096 0.904 9 C 0.083 3.917 10 C -0.211 4.211 11 C -0.100 4.100 12 C -0.228 4.228 13 C 0.089 3.911 14 N -0.378 5.378 15 C 0.418 3.582 16 O -0.521 6.521 17 N -0.375 5.375 18 C -0.027 4.027 19 C -0.143 4.143 20 C -0.024 4.024 21 H 0.136 0.864 22 C -0.053 4.053 23 N -0.305 5.305 24 C -0.020 4.020 25 N -0.195 5.195 26 H 0.307 0.693 27 N -0.168 5.168 28 C 0.017 3.983 29 C -0.084 4.084 30 C -0.261 4.261 31 H 0.100 0.900 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.241 0.759 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.130 0.870 41 H 0.289 0.711 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.134 0.866 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.184 -18.626 -19.234 26.864 hybrid contribution -0.116 0.856 -0.518 1.007 sum 2.068 -17.770 -19.753 26.650 Atomic orbital electron populations 1.69882 1.09079 1.30640 1.35088 1.26784 0.95455 1.04626 0.91167 0.85162 0.79522 0.76167 0.78899 1.17999 1.18910 1.19193 1.19920 0.98484 0.92484 1.41470 0.90392 1.18021 0.91654 0.93158 0.88842 1.21254 1.00322 0.96972 1.02546 1.20739 0.98203 0.92413 0.98644 1.19167 1.01861 0.92927 1.08884 1.19584 0.95190 0.91903 0.84381 1.45393 1.40081 1.24734 1.27633 1.15636 0.81556 0.81227 0.79804 1.90863 1.34124 1.61940 1.65170 1.47489 1.38516 1.27427 1.24059 1.22257 0.89484 0.97505 0.93475 1.22643 1.03539 0.91138 0.96935 1.20556 0.97032 0.94589 0.90268 0.86375 1.23753 0.92906 0.92141 0.96517 1.70405 1.31330 1.11876 1.16930 1.27064 0.86760 0.97177 0.91036 1.48118 1.33924 1.13979 1.23465 0.69298 1.77937 1.23353 1.11830 1.03727 1.21938 0.96244 0.85810 0.94304 1.20680 0.94445 0.97014 0.96309 1.21149 1.04458 0.92941 1.07529 0.90044 0.88138 0.87968 0.93089 0.92357 0.75914 0.89627 0.90494 0.90105 0.86989 0.71140 0.91943 0.91569 0.86609 0.88231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.38 10.95 21.83 0.24 -42.14 16 2 C 0.04 1.74 5.14 85.26 0.44 2.18 16 3 Si 0.98 37.31 29.60 68.60 2.03 39.34 16 4 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 5 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 6 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 7 C -0.49 -26.03 9.05 23.46 0.21 -25.82 16 8 H 0.08 3.95 7.91 -2.91 -0.02 3.93 16 9 C 0.09 4.51 5.58 -21.29 -0.12 4.39 16 10 C -0.19 -9.81 8.70 22.73 0.20 -9.61 16 11 C -0.08 -3.64 9.67 22.22 0.21 -3.43 16 12 C -0.23 -9.27 5.27 -19.68 -0.10 -9.37 16 13 C 0.21 7.76 5.79 85.63 0.50 8.25 16 14 N -0.72 -23.41 5.51 -482.30 -2.66 -26.07 16 15 C 0.72 24.43 8.49 179.06 1.52 25.95 16 16 O -0.64 -27.03 16.60 -3.99 -0.07 -27.09 16 17 N -0.64 -16.75 3.33 -829.74 -2.76 -19.51 16 18 C 0.09 1.74 6.15 86.73 0.53 2.27 16 19 C -0.10 -1.54 6.41 31.78 0.20 -1.34 16 20 C 0.00 -0.05 3.57 -10.15 -0.04 -0.09 16 21 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 22 C 0.23 4.39 6.83 138.63 0.95 5.34 16 23 N -0.58 -9.83 11.19 -191.80 -2.15 -11.98 16 24 C 0.28 2.20 13.13 180.36 2.37 4.56 16 25 N -0.48 -4.42 7.45 -60.49 -0.45 -4.87 16 26 H 0.46 0.79 8.96 -213.10 -1.91 -1.13 16 27 N -0.34 -6.28 12.44 -51.33 -0.64 -6.91 16 28 C 0.14 3.42 6.37 86.86 0.55 3.97 16 29 C -0.07 -2.75 9.67 22.22 0.21 -2.53 16 30 C -0.24 -11.40 9.80 22.73 0.22 -11.18 16 31 H 0.29 13.43 8.30 -92.71 -0.77 12.66 16 32 H 0.10 5.43 6.16 -2.91 -0.02 5.41 16 33 H 0.10 4.22 8.06 -2.91 -0.02 4.20 16 34 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 35 H 0.06 2.14 8.08 -2.39 -0.02 2.12 16 36 H 0.41 11.70 7.45 -92.71 -0.69 11.01 16 37 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.08 1.28 7.98 -2.38 -0.02 1.26 16 40 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.27 -1.10 8.06 -2.91 -0.02 -1.13 16 42 H 0.06 1.62 7.78 -2.39 -0.02 1.60 16 43 H 0.07 1.79 8.04 -2.39 -0.02 1.77 16 44 H 0.12 4.19 8.06 -2.91 -0.02 4.16 16 45 H 0.10 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -74.25 381.50 -0.14 -74.39 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: -1.56 Total: 31.29 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 7.86 Total: -6.44 kcal Atomic # 7 Polarization: -103.07 SS G_CDS: -8.41 Total: -111.49 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.07 Total: -27.09 kcal Atomic # 14 Polarization: 37.31 SS G_CDS: 2.03 Total: 39.34 kcal Total: -74.25 -0.14 -74.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576939027.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.281 kcal (2) G-P(sol) polarization free energy of solvation -74.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds