Wall clock time and date at job start Sat Apr 11 2020 06:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86798 * 119.99975 * 2 1 4 4 H 1.48495 * 109.47135 * 274.66023 * 3 2 1 5 5 H 1.48501 * 109.46933 * 34.65911 * 3 2 1 6 6 H 1.48500 * 109.47240 * 154.65964 * 3 2 1 7 7 C 1.39946 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99714 * 162.23608 * 7 2 1 9 9 C 1.41395 * 120.00058 * 342.24141 * 7 2 1 10 10 C 1.40713 * 120.24785 * 155.28545 * 9 7 2 11 11 C 1.37612 * 119.74906 * 180.02562 * 10 9 7 12 12 C 1.38637 * 120.24670 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.75201 * 179.97438 * 12 11 10 14 14 N 1.46501 * 109.47155 * 89.99787 * 13 12 11 15 15 C 1.34773 * 119.99817 * 180.02562 * 14 13 12 16 16 O 1.21582 * 120.00210 * 0.02562 * 15 14 13 17 17 N 1.34781 * 119.99648 * 180.02562 * 15 14 13 18 18 C 1.47024 * 125.64842 * 0.02773 * 17 15 14 19 19 C 1.54321 * 107.40148 * 181.10342 * 18 17 15 20 20 C 1.55161 * 102.94537 * 22.11073 * 19 18 17 21 21 H 1.09004 * 111.00058 * 82.56940 * 20 19 18 22 22 C 1.50696 * 111.00794 * 206.42631 * 20 19 18 23 23 N 1.33243 * 125.52660 * 240.00339 * 22 20 19 24 24 C 1.30830 * 109.82694 * 180.02562 * 23 22 20 25 25 N 1.34431 * 108.07680 * 359.97438 * 24 23 22 26 26 H 0.96999 * 126.81753 * 180.02562 * 25 24 23 27 27 N 1.30712 * 125.52256 * 59.69210 * 22 20 19 28 28 C 1.47746 * 125.82377 * 179.97438 * 17 15 14 29 29 C 1.38641 * 120.50033 * 0.25518 * 12 11 10 30 30 C 1.37613 * 120.24772 * 359.44255 * 29 12 11 31 31 H 0.97001 * 120.00113 * 0.02562 * 1 2 3 32 32 H 1.08000 * 120.12385 * 0.04545 * 10 9 7 33 33 H 1.07996 * 119.87913 * 179.97438 * 11 10 9 34 34 H 1.09008 * 109.46597 * 330.00390 * 13 12 11 35 35 H 1.08994 * 109.47586 * 210.00765 * 13 12 11 36 36 H 0.97003 * 119.99638 * 0.02562 * 14 13 12 37 37 H 1.08993 * 109.88622 * 61.60356 * 18 17 15 38 38 H 1.09003 * 109.87747 * 300.59233 * 18 17 15 39 39 H 1.08998 * 110.72418 * 140.47610 * 19 18 17 40 40 H 1.09008 * 110.71854 * 263.57376 * 19 18 17 41 41 H 1.08005 * 125.96047 * 180.02562 * 24 23 22 42 42 H 1.09007 * 110.28767 * 37.02134 * 28 17 15 43 43 H 1.09002 * 110.43076 * 274.70954 * 28 17 15 44 44 H 1.07994 * 119.87145 * 179.70170 * 29 12 11 45 45 H 1.07997 * 120.12876 * 180.27478 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3912 2.1033 -1.3954 5 1 1.4924 2.6222 0.7962 6 1 3.5856 1.4138 0.5992 7 6 2.0080 -1.2119 0.0005 8 1 3.0494 -1.2343 -0.2848 9 6 1.3516 -2.4072 0.3746 10 6 1.8218 -3.6493 -0.0901 11 6 1.1748 -4.8061 0.2799 12 6 0.0634 -4.7508 1.1068 13 6 -0.6370 -6.0245 1.5045 14 7 -0.0452 -6.5416 2.7409 15 6 -0.5147 -7.6804 3.2878 16 8 -1.4290 -8.2789 2.7549 17 7 0.0295 -8.1558 4.4255 18 6 1.1341 -7.5354 5.1716 19 6 1.4376 -8.4403 6.3842 20 6 0.8647 -9.8138 5.9451 21 1 1.5747 -10.3500 5.3153 22 6 0.4729 -10.6430 7.1408 23 7 0.9746 -11.8373 7.4527 24 6 0.4173 -12.2798 8.5506 25 7 -0.4677 -11.3588 8.9696 26 1 -1.0312 -11.4103 9.7574 27 7 -0.4100 -10.3046 8.0434 28 6 -0.3828 -9.3855 5.1333 29 6 -0.4121 -3.5321 1.5658 30 6 0.2228 -2.3631 1.2136 31 1 -0.4850 0.8400 -0.0004 32 1 2.6874 -3.6947 -0.7343 33 1 1.5337 -5.7606 -0.0758 34 1 -0.5249 -6.7637 0.7112 35 1 -1.6958 -5.8220 1.6654 36 1 0.6846 -6.0643 3.1659 37 1 0.8392 -6.5435 5.5138 38 1 2.0156 -7.4609 4.5348 39 1 2.5119 -8.5077 6.5558 40 1 0.9283 -8.0742 7.2757 41 1 0.6316 -13.2205 9.0360 42 1 -0.6541 -10.1610 4.4169 43 1 -1.2175 -9.1774 5.8027 44 1 -1.2816 -3.5004 2.2056 45 1 -0.1467 -1.4151 1.5759 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576939028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:15 Heat of formation + Delta-G solvation = 77.034374 kcal Electronic energy + Delta-G solvation = -27762.321747 eV Core-core repulsion = 23781.042615 eV Total energy + Delta-G solvation = -3981.279132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.55617 -40.05942 -38.02042 -37.36639 -34.64553 -33.63985 -33.26190 -32.22352 -30.84641 -30.09330 -29.34048 -29.01298 -26.81892 -24.56910 -23.50791 -22.93803 -22.24409 -21.04990 -20.13097 -20.03948 -19.71940 -18.84722 -17.99900 -17.37073 -16.47364 -15.81353 -15.69071 -15.46604 -15.39492 -14.76230 -14.61047 -13.98377 -13.78607 -13.75381 -13.52064 -13.38672 -12.91289 -12.78354 -12.54981 -12.51622 -12.06179 -12.01381 -11.82164 -11.71526 -11.56789 -11.16759 -11.12314 -11.07961 -10.59730 -10.53494 -10.49637 -10.45139 -10.03948 -9.93997 -9.66992 -9.46649 -9.20696 -8.80689 -8.32679 -7.54715 -7.43156 -6.85083 -4.44506 1.16909 2.21336 2.40191 2.50963 2.85034 3.00632 3.03055 3.06737 3.16358 3.46347 3.67856 3.86602 4.13951 4.18313 4.44673 4.47480 4.52567 4.67381 4.85822 5.06876 5.13048 5.46331 5.52762 5.62122 5.65549 5.75250 5.76371 5.82909 5.86015 5.97904 5.99536 6.20338 6.29123 6.36300 6.40591 6.57541 6.89076 6.96352 6.99676 7.19512 7.25257 7.29446 7.53644 7.64498 7.76601 7.97487 8.04614 8.21368 8.28609 8.55779 8.80626 8.88031 8.89013 10.09077 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023817 B = 0.001793 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.358334 B =15608.969121 C =16089.652465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.459 4.459 8 H 0.079 0.921 9 C 0.116 3.884 10 C -0.229 4.229 11 C -0.069 4.069 12 C -0.244 4.244 13 C 0.202 3.798 14 N -0.731 5.731 15 C 0.719 3.281 16 O -0.597 6.597 17 N -0.641 5.641 18 C 0.100 3.900 19 C -0.116 4.116 20 C -0.012 4.012 21 H 0.114 0.886 22 C 0.242 3.758 23 N -0.539 5.539 24 C 0.262 3.738 25 N -0.485 5.485 26 H 0.443 0.557 27 N -0.305 5.305 28 C 0.141 3.859 29 C -0.080 4.080 30 C -0.170 4.170 31 H 0.282 0.718 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.396 0.604 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.224 0.776 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.063 -17.744 18.169 25.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.488 4.488 8 H 0.097 0.903 9 C 0.114 3.886 10 C -0.249 4.249 11 C -0.088 4.088 12 C -0.245 4.245 13 C 0.080 3.920 14 N -0.385 5.385 15 C 0.421 3.579 16 O -0.476 6.476 17 N -0.381 5.381 18 C -0.023 4.023 19 C -0.155 4.155 20 C -0.034 4.034 21 H 0.132 0.868 22 C -0.041 4.041 23 N -0.267 5.267 24 C -0.038 4.038 25 N -0.203 5.203 26 H 0.288 0.712 27 N -0.134 5.134 28 C 0.016 3.984 29 C -0.099 4.099 30 C -0.189 4.189 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.230 0.770 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.240 0.760 42 H 0.100 0.900 43 H 0.090 0.910 44 H 0.106 0.894 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.997 -17.467 17.395 24.671 hybrid contribution 0.336 0.708 0.938 1.222 sum 1.333 -16.759 18.333 24.874 Atomic orbital electron populations 1.69827 1.07646 1.29425 1.34293 1.25951 0.94736 1.01461 0.92153 0.86303 0.80765 0.80582 0.79145 1.19496 1.19976 1.18363 1.19646 0.98175 0.91288 1.39681 0.90301 1.17674 0.90882 0.92059 0.88017 1.20963 1.03993 0.92845 1.07104 1.20415 0.94877 0.96510 0.96972 1.19003 1.02530 0.92615 1.10392 1.19818 0.95686 0.92958 0.83541 1.45718 1.39752 1.24584 1.28432 1.15560 0.81849 0.81459 0.79039 1.90893 1.32113 1.60992 1.63569 1.47565 1.38158 1.27045 1.25312 1.21989 0.90284 0.97111 0.92959 1.22686 1.02219 0.92546 0.98097 1.20675 0.98508 0.93830 0.90384 0.86762 1.23782 0.92572 0.91505 0.96198 1.70432 1.29505 1.11862 1.14911 1.26137 0.88562 0.96568 0.92489 1.48169 1.33831 1.14438 1.23835 0.71187 1.78037 1.23130 1.09383 1.02870 1.21983 0.94981 0.86709 0.94741 1.20567 0.98014 0.92591 0.98735 1.21304 0.99462 0.96762 1.01382 0.90707 0.88913 0.89341 0.92563 0.92526 0.76990 0.91045 0.91028 0.89333 0.89833 0.76026 0.90021 0.91045 0.89387 0.86449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.85 10.97 55.55 0.61 -19.24 16 2 C 0.08 1.84 5.14 -17.34 -0.09 1.76 16 3 Si 0.91 18.08 29.59 -169.99 -5.03 13.05 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.46 -11.78 9.05 -37.74 -0.34 -12.12 16 8 H 0.08 1.94 7.91 -52.49 -0.41 1.53 16 9 C 0.12 3.00 5.57 -106.82 -0.60 2.40 16 10 C -0.23 -5.42 9.80 -38.88 -0.38 -5.80 16 11 C -0.07 -1.48 9.67 -39.66 -0.38 -1.86 16 12 C -0.24 -5.10 5.27 -104.33 -0.55 -5.65 16 13 C 0.20 3.81 5.79 -5.19 -0.03 3.78 16 14 N -0.73 -12.27 5.51 -66.41 -0.37 -12.63 16 15 C 0.72 12.47 8.49 -86.92 -0.74 11.73 16 16 O -0.60 -12.57 16.62 5.29 0.09 -12.48 16 17 N -0.64 -8.67 3.34 -176.00 -0.59 -9.26 16 18 C 0.10 1.01 6.14 -3.06 -0.02 0.99 16 19 C -0.12 -0.97 6.41 -24.90 -0.16 -1.13 16 20 C -0.01 -0.12 3.57 -89.64 -0.32 -0.44 16 21 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 22 C 0.24 2.44 6.83 -156.85 -1.07 1.37 16 23 N -0.54 -5.06 11.19 -11.98 -0.13 -5.20 16 24 C 0.26 1.39 13.13 -90.65 -1.19 0.20 16 25 N -0.48 -2.75 7.45 29.53 0.22 -2.53 16 26 H 0.44 0.87 8.96 -182.34 -1.63 -0.77 16 27 N -0.31 -2.99 12.44 32.42 0.40 -2.58 16 28 C 0.14 1.70 6.38 -2.37 -0.02 1.68 16 29 C -0.08 -1.80 9.67 -39.66 -0.38 -2.18 16 30 C -0.17 -4.25 8.70 -38.87 -0.34 -4.59 16 31 H 0.28 6.45 8.30 -40.82 -0.34 6.12 16 32 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 33 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.06 1.07 8.08 -51.92 -0.42 0.65 16 35 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 36 H 0.40 6.05 7.45 -40.82 -0.30 5.75 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.73 7.98 -51.92 -0.41 0.31 16 41 H 0.22 0.02 8.06 -52.48 -0.42 -0.40 16 42 H 0.08 1.07 8.05 -51.92 -0.42 0.65 16 43 H 0.07 0.91 7.79 -51.93 -0.40 0.50 16 44 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 45 H 0.12 3.05 6.17 -52.49 -0.32 2.73 16 LS Contribution 381.58 15.07 5.75 5.75 Total: -1.00 -33.26 381.58 -12.92 -46.18 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -7.27 Total: 8.82 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -6.60 Total: -9.87 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: 0.15 Total: -51.44 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.09 Total: -12.48 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.26 -12.92 -46.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576939028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.213 kcal (2) G-P(sol) polarization free energy of solvation -33.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds