Wall clock time and date at job start Sat Apr 11 2020 06:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31527 * 1 3 3 Si 1.86796 * 119.99876 * 2 1 4 4 H 1.48497 * 109.47212 * 270.00258 * 3 2 1 5 5 H 1.48503 * 109.47089 * 30.00340 * 3 2 1 6 6 H 1.48499 * 109.47315 * 149.99894 * 3 2 1 7 7 C 1.37874 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00077 * 155.32571 * 7 2 1 9 9 C 1.50704 * 119.99985 * 335.32328 * 7 2 1 10 10 C 1.53004 * 115.54790 * 323.81055 * 9 7 2 11 11 N 1.46497 * 109.47153 * 275.95635 * 10 9 7 12 12 C 1.35309 * 125.86899 * 120.92714 * 11 10 9 13 13 C 1.35348 * 106.17949 * 180.02562 * 12 11 10 14 14 C 1.50697 * 126.75504 * 180.02562 * 13 12 11 15 15 N 1.46502 * 109.47527 * 94.99969 * 14 13 12 16 16 C 1.34772 * 120.00149 * 179.97438 * 15 14 13 17 17 O 1.21601 * 119.99932 * 0.02562 * 16 15 14 18 18 C 1.47437 * 120.00156 * 179.97438 * 16 15 14 19 19 C 1.39733 * 120.20203 * 353.52809 * 18 16 15 20 20 C 1.37751 * 119.92319 * 180.02562 * 19 18 16 21 21 C 1.38612 * 120.35227 * 359.97438 * 20 19 18 22 22 C 1.37950 * 120.42269 * 359.97438 * 21 20 19 23 23 C 1.38963 * 120.06496 * 0.02562 * 22 21 20 24 24 N 1.38880 * 120.17497 * 180.02562 * 23 22 21 25 25 N 1.33773 * 106.49296 * 0.25891 * 13 12 11 26 26 N 1.28630 * 108.88482 * 359.56576 * 25 13 12 27 27 C 1.52992 * 117.52030 * 109.51538 * 9 7 2 28 28 C 1.52999 * 60.00297 * 107.48210 * 27 9 7 29 29 H 0.97000 * 119.99694 * 5.02867 * 1 2 3 30 30 H 1.09003 * 109.46928 * 155.95554 * 10 9 7 31 31 H 1.09003 * 109.47015 * 35.95705 * 10 9 7 32 32 H 1.08006 * 126.91422 * 0.05022 * 12 11 10 33 33 H 1.08997 * 109.47285 * 334.99348 * 14 13 12 34 34 H 1.09004 * 109.47335 * 214.99839 * 14 13 12 35 35 H 0.96999 * 119.99663 * 0.02562 * 15 14 13 36 36 H 1.07992 * 120.04266 * 359.97438 * 19 18 16 37 37 H 1.07998 * 119.82741 * 179.72048 * 20 19 18 38 38 H 1.07998 * 119.79089 * 180.02562 * 21 20 19 39 39 H 1.08008 * 119.97262 * 179.97438 * 22 21 20 40 40 H 0.96996 * 119.99598 * 190.47009 * 24 23 22 41 41 H 0.96995 * 119.99742 * 10.46717 * 24 23 22 42 42 H 1.09001 * 117.50066 * 214.97477 * 27 9 7 43 43 H 1.09000 * 117.50263 * 359.97438 * 27 9 7 44 44 H 1.09001 * 117.49348 * 252.51639 * 28 27 9 45 45 H 1.08994 * 117.49864 * 107.49013 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0107 -1.2366 -0.3910 9 6 1.3543 -2.4398 0.5438 10 6 0.4435 -2.2331 1.7557 11 7 1.2518 -2.2195 2.9774 12 6 1.3286 -1.2020 3.8660 13 6 2.1822 -1.6101 4.8338 14 6 2.6009 -0.8312 6.0541 15 7 1.7523 -1.2062 7.1879 16 6 1.9454 -0.6336 8.3925 17 8 2.8236 0.1947 8.5382 18 6 1.0910 -1.0106 9.5334 19 6 -0.0039 -1.8574 9.3421 20 6 -0.7986 -2.2055 10.4120 21 6 -0.5182 -1.7206 11.6799 22 6 0.5597 -0.8845 11.8854 23 6 1.3730 -0.5221 10.8185 24 7 2.4590 0.3190 11.0228 25 7 2.5850 -2.8390 4.4915 26 7 2.0114 -3.1733 3.3898 27 6 0.9615 -3.5276 -0.4578 28 6 2.1547 -3.7420 0.4756 29 1 -0.4850 0.8368 -0.0736 30 1 -0.2811 -3.0457 1.8084 31 1 -0.0822 -1.2833 1.6573 32 1 0.8124 -0.2548 3.8137 33 1 2.4949 0.2357 5.8581 34 1 3.6414 -1.0557 6.2891 35 1 1.0520 -1.8673 7.0717 36 1 -0.2273 -2.2379 8.3564 37 1 -1.6471 -2.8565 10.2616 38 1 -1.1470 -1.9997 12.5123 39 1 0.7713 -0.5105 12.8763 40 1 2.9330 0.6923 10.2633 41 1 2.7435 0.5332 11.9251 42 1 0.0541 -4.0959 -0.2535 43 1 1.1730 -3.3422 -1.5109 44 1 3.1514 -3.6977 0.0366 45 1 2.0323 -4.4514 1.2940 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594651068.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:58 Heat of formation + Delta-G solvation = 119.977533 kcal Electronic energy + Delta-G solvation = -28508.692197 eV Core-core repulsion = 24529.275220 eV Total energy + Delta-G solvation = -3979.416977 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.70113 -40.46438 -38.42023 -37.09097 -35.53688 -34.34011 -33.11696 -32.49745 -31.82888 -30.55349 -28.89458 -27.28883 -26.39029 -25.66556 -23.77945 -22.28467 -21.70452 -21.24540 -20.94033 -20.75325 -19.41144 -18.17579 -17.04880 -16.98246 -16.63551 -16.29787 -15.86859 -15.41325 -15.32582 -15.08808 -14.84567 -14.33442 -14.24418 -14.01449 -13.89438 -13.60192 -13.33478 -13.26015 -12.90406 -12.47568 -12.20679 -12.07639 -11.78650 -11.51727 -11.22844 -11.14907 -10.99902 -10.88337 -10.62938 -10.41263 -10.33928 -10.17846 -9.94838 -9.45359 -9.31715 -9.17848 -9.04052 -8.93105 -8.77560 -8.35091 -7.75801 -6.43739 -4.33529 0.76787 1.39358 2.16205 2.69510 2.79337 3.08903 3.10921 3.19740 3.27915 3.49535 3.76328 3.79062 4.15459 4.53461 4.59724 4.64577 4.71142 4.85213 5.09186 5.17386 5.19796 5.31600 5.43813 5.48059 5.58154 5.65094 5.72208 5.74621 5.90073 5.94228 6.12489 6.14711 6.21767 6.31676 6.33162 6.36794 6.50153 6.60197 6.64011 6.66073 6.88727 7.03610 7.22265 7.30675 7.32127 7.42658 7.62262 7.73893 8.10920 8.20588 8.58105 9.08621 9.20942 10.61118 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015778 B = 0.002472 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.224933 B =11326.395035 C =12093.804593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.073 3.927 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.493 4.493 8 H 0.066 0.934 9 C 0.029 3.971 10 C 0.135 3.865 11 N -0.251 5.251 12 C -0.018 4.018 13 C -0.071 4.071 14 C 0.217 3.783 15 N -0.714 5.714 16 C 0.573 3.427 17 O -0.557 6.557 18 C -0.227 4.227 19 C -0.033 4.033 20 C -0.193 4.193 21 C -0.043 4.043 22 C -0.215 4.215 23 C 0.279 3.721 24 N -0.858 5.858 25 N -0.275 5.275 26 N -0.077 5.077 27 C -0.188 4.188 28 C -0.191 4.191 29 H 0.268 0.732 30 H 0.072 0.928 31 H 0.143 0.857 32 H 0.182 0.818 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.402 0.598 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.418 0.582 41 H 0.392 0.608 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.708 -0.806 19.782 20.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.530 4.530 8 H 0.084 0.916 9 C 0.027 3.973 10 C 0.016 3.984 11 N -0.041 5.041 12 C -0.173 4.173 13 C -0.210 4.210 14 C 0.092 3.908 15 N -0.365 5.365 16 C 0.363 3.637 17 O -0.437 6.437 18 C -0.236 4.236 19 C -0.052 4.052 20 C -0.214 4.214 21 C -0.062 4.062 22 C -0.238 4.238 23 C 0.167 3.833 24 N -0.404 5.404 25 N -0.142 5.142 26 N -0.057 5.057 27 C -0.227 4.227 28 C -0.228 4.228 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.160 0.840 32 H 0.199 0.801 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.238 0.762 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.260 0.740 41 H 0.219 0.781 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.693 -1.492 19.489 19.731 hybrid contribution -0.215 1.849 -0.206 1.872 sum -2.909 0.357 19.283 19.505 Atomic orbital electron populations 1.69901 1.06177 1.27694 1.47276 1.24959 0.94662 0.99376 0.94060 0.86716 0.80749 0.82884 0.78784 1.20299 1.20593 1.19381 1.20475 1.00460 0.90692 1.41328 0.91614 1.19028 0.96608 0.89364 0.92272 1.22283 0.91231 1.06582 0.78311 1.47721 1.28773 1.09682 1.17962 1.23357 1.04605 0.97125 0.92171 1.21581 1.03606 0.95689 1.00128 1.19273 0.94664 0.96995 0.79862 1.45918 1.37218 1.44161 1.09215 1.18053 0.82923 0.80411 0.82343 1.90399 1.35209 1.34878 1.83250 1.19295 1.02482 1.09063 0.92741 1.21100 0.92102 0.92966 0.99042 1.20809 1.02434 1.05371 0.92737 1.21056 0.94875 0.93304 0.97010 1.20648 0.98793 1.06385 0.97983 1.17734 0.86540 0.87005 0.91989 1.43422 1.32881 1.51652 1.12471 1.74996 1.20052 1.12223 1.06906 1.78209 1.05448 1.14623 1.07405 1.23044 0.97145 1.05405 0.97111 1.22931 0.95568 1.02104 1.02233 0.92191 0.90969 0.84008 0.80067 0.89740 0.89746 0.76200 0.85819 0.85836 0.85844 0.85742 0.73959 0.78099 0.91428 0.89865 0.90542 0.89718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.47 11.38 55.43 0.63 -20.84 16 2 C 0.07 1.80 4.93 -17.82 -0.09 1.71 16 3 Si 0.88 19.43 29.61 -169.99 -5.03 14.39 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.49 -12.48 8.95 -34.44 -0.31 -12.79 16 8 H 0.07 1.73 7.93 -52.49 -0.42 1.31 16 9 C 0.03 0.65 1.94 -155.66 -0.30 0.35 16 10 C 0.14 2.77 6.20 -4.04 -0.03 2.74 16 11 N -0.25 -4.93 3.41 -61.26 -0.21 -5.14 16 12 C -0.02 -0.31 11.50 -17.05 -0.20 -0.51 16 13 C -0.07 -1.19 6.62 -82.78 -0.55 -1.73 16 14 C 0.22 3.07 6.23 -5.19 -0.03 3.04 16 15 N -0.71 -9.02 5.50 -62.56 -0.34 -9.36 16 16 C 0.57 7.68 7.74 -12.52 -0.10 7.58 16 17 O -0.56 -8.55 13.66 5.28 0.07 -8.47 16 18 C -0.23 -2.66 5.89 -104.80 -0.62 -3.28 16 19 C -0.03 -0.32 9.52 -39.20 -0.37 -0.70 16 20 C -0.19 -1.65 10.02 -39.62 -0.40 -2.05 16 21 C -0.04 -0.34 10.03 -39.55 -0.40 -0.74 16 22 C -0.22 -1.88 9.89 -39.42 -0.39 -2.27 16 23 C 0.28 3.02 6.76 -83.61 -0.57 2.46 16 24 N -0.86 -8.49 8.89 32.55 0.29 -8.20 16 25 N -0.28 -5.36 12.41 33.29 0.41 -4.94 16 26 N -0.08 -1.58 11.39 60.35 0.69 -0.89 16 27 C -0.19 -3.96 9.88 -26.74 -0.26 -4.22 16 28 C -0.19 -4.04 9.19 -26.73 -0.25 -4.28 16 29 H 0.27 6.27 8.32 -40.82 -0.34 5.93 16 30 H 0.07 1.36 7.91 -51.93 -0.41 0.94 16 31 H 0.14 3.06 5.46 -51.93 -0.28 2.78 16 32 H 0.18 2.72 8.06 -52.48 -0.42 2.30 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.40 4.54 6.54 -40.82 -0.27 4.28 16 36 H 0.12 1.03 6.46 -52.49 -0.34 0.69 16 37 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 39 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 40 H 0.42 4.91 5.41 -40.86 -0.22 4.69 16 41 H 0.39 2.72 8.85 -40.82 -0.36 2.35 16 42 H 0.07 1.29 8.06 -51.93 -0.42 0.87 16 43 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 44 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 45 H 0.08 1.74 7.21 -51.93 -0.37 1.36 16 LS Contribution 379.79 15.07 5.72 5.72 Total: -1.00 -28.62 379.79 -8.22 -36.84 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -5.61 Total: 15.58 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -4.84 Total: -14.69 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 1.47 Total: -49.37 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.07 Total: -8.47 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.39 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.62 -8.22 -36.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594651068.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.818 kcal (2) G-P(sol) polarization free energy of solvation -28.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds