Wall clock time and date at job start Sat Apr 11 2020 06:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00011 * 2 1 4 4 H 1.48495 * 109.47118 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47119 * 299.99781 * 3 2 1 6 6 H 1.48501 * 109.47171 * 59.99348 * 3 2 1 7 7 C 1.37882 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99279 * 174.27136 * 7 2 1 9 9 C 1.50697 * 120.00064 * 354.27403 * 7 2 1 10 10 C 1.52997 * 115.54779 * 300.81525 * 9 7 2 11 11 N 1.46498 * 109.47613 * 277.68891 * 10 9 7 12 12 C 1.35205 * 125.75544 * 124.36282 * 11 10 9 13 13 C 1.36482 * 106.04976 * 180.02562 * 12 11 10 14 14 C 1.48446 * 126.90742 * 180.02562 * 13 12 11 15 15 C 1.39377 * 120.08588 * 4.99561 * 14 13 12 16 16 C 1.38047 * 120.02135 * 179.97438 * 15 14 13 17 17 C 1.38211 * 120.19629 * 359.96108 * 16 15 14 18 18 C 1.38930 * 120.16534 * 0.02562 * 17 16 15 19 19 N 1.39941 * 120.00876 * 180.02562 * 18 17 16 20 20 C 1.34775 * 119.99801 * 212.39483 * 19 18 17 21 21 O 1.21288 * 120.00076 * 5.17161 * 20 19 18 22 22 C 1.50704 * 120.00137 * 185.16981 * 20 19 18 23 23 N 1.46893 * 109.47302 * 179.97438 * 22 20 19 24 24 C 1.38690 * 119.98055 * 359.77396 * 18 17 16 25 25 N 1.34500 * 106.18906 * 359.97438 * 13 12 11 26 26 N 1.28615 * 108.78269 * 0.02562 * 25 13 12 27 27 C 1.52995 * 117.52063 * 86.51910 * 9 7 2 28 28 C 1.52998 * 60.00152 * 107.47588 * 27 9 7 29 29 H 0.96994 * 119.99826 * 5.01890 * 1 2 3 30 30 H 1.08998 * 109.46953 * 157.68921 * 10 9 7 31 31 H 1.09004 * 109.47437 * 37.68987 * 10 9 7 32 32 H 1.07996 * 126.97596 * 0.02562 * 12 11 10 33 33 H 1.08000 * 119.98648 * 359.97438 * 15 14 13 34 34 H 1.08004 * 119.89881 * 179.97438 * 16 15 14 35 35 H 1.07998 * 119.91887 * 180.02562 * 17 16 15 36 36 H 0.96995 * 120.00374 * 32.38922 * 19 18 17 37 37 H 1.09000 * 109.47132 * 300.00165 * 22 20 19 38 38 H 1.09005 * 109.46886 * 59.99727 * 22 20 19 39 39 H 1.00905 * 111.00082 * 56.04252 * 23 22 20 40 40 H 1.00893 * 111.00335 * 180.02562 * 23 22 20 41 41 H 1.07992 * 120.10259 * 180.25272 * 24 18 17 42 42 H 1.08993 * 117.50309 * 214.97027 * 27 9 7 43 43 H 1.09004 * 117.49685 * 359.97438 * 27 9 7 44 44 H 1.08995 * 117.50328 * 252.51174 * 28 27 9 45 45 H 1.09003 * 117.49242 * 107.48715 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0805 -1.1964 -0.0928 9 6 1.2566 -2.4959 0.1313 10 6 0.4208 -2.6517 1.4033 11 7 1.2833 -3.0875 2.5043 12 6 1.4247 -2.4595 3.6933 13 6 2.3175 -3.2034 4.4090 14 6 2.8061 -2.9298 5.7838 15 6 2.2711 -1.8727 6.5180 16 6 2.7260 -1.6198 7.7966 17 6 3.7116 -2.4129 8.3533 18 6 4.2502 -3.4688 7.6288 19 7 5.2475 -4.2701 8.1959 20 6 6.2014 -4.8131 7.4139 21 8 6.2514 -4.5327 6.2349 22 6 7.2060 -5.7688 8.0043 23 7 8.1309 -6.2172 6.9548 24 6 3.7955 -3.7319 6.3452 25 7 2.6649 -4.2349 3.6188 26 7 2.0342 -4.1322 2.5027 27 6 0.7176 -3.1334 -1.1508 28 6 1.9206 -3.7521 -0.4361 29 1 -0.4849 0.8368 -0.0735 30 1 -0.3591 -3.3947 1.2367 31 1 -0.0368 -1.6954 1.6569 32 1 0.9314 -1.5533 4.0120 33 1 1.5004 -1.2513 6.0864 34 1 2.3104 -0.7999 8.3635 35 1 4.0638 -2.2112 9.3541 36 1 5.2524 -4.4345 9.1518 37 1 7.7664 -5.2659 8.7923 38 1 6.6856 -6.6308 8.4219 39 1 8.5783 -5.4312 6.5071 40 1 8.8146 -6.8598 7.3256 41 1 4.2099 -4.5547 5.7818 42 1 -0.2325 -3.6638 -1.0882 43 1 0.9035 -2.6110 -2.0892 44 1 2.8982 -3.6369 -0.9042 45 1 1.7618 -4.6896 0.0968 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594653091.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:05 Heat of formation + Delta-G solvation = 120.160743 kcal Electronic energy + Delta-G solvation = -28656.319919 eV Core-core repulsion = 24676.910886 eV Total energy + Delta-G solvation = -3979.409033 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.48597 -40.57529 -38.51633 -36.93501 -35.07428 -34.35188 -33.28145 -32.22996 -31.86554 -30.11102 -28.91104 -27.06392 -26.36714 -25.54173 -23.55501 -22.84397 -21.32642 -21.13003 -20.75032 -20.26164 -19.32924 -17.94552 -17.52810 -16.52470 -16.21029 -16.10219 -15.85534 -15.39862 -15.35508 -14.83376 -14.71780 -14.42290 -14.24612 -13.89429 -13.73918 -13.50501 -13.22267 -13.18051 -12.91196 -12.53788 -11.96361 -11.84631 -11.67715 -11.48747 -11.13421 -11.06104 -10.90328 -10.67007 -10.53210 -10.29800 -10.23595 -10.00334 -9.92177 -9.51337 -9.20329 -9.09290 -8.97427 -8.72610 -8.34783 -8.22530 -7.85335 -6.25813 -4.29629 1.10893 1.42334 2.36622 2.48848 2.76168 3.17181 3.17839 3.21384 3.27001 3.33903 4.09433 4.23262 4.26309 4.37800 4.64488 4.78342 4.88937 4.93578 4.95939 5.10625 5.24224 5.33557 5.37470 5.49450 5.57672 5.68294 5.79925 5.84032 5.98448 6.16978 6.24862 6.29067 6.37427 6.40155 6.44669 6.60583 6.61678 6.75441 6.78615 6.84836 6.97417 7.03313 7.08089 7.17087 7.21741 7.33551 7.42974 7.71638 7.97380 8.20714 8.71614 9.22869 9.35279 10.82008 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012495 B = 0.002813 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.372877 B = 9950.017503 C =10587.652330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.069 3.931 3 Si 0.892 3.108 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.488 4.488 8 H 0.062 0.938 9 C 0.026 3.974 10 C 0.146 3.854 11 N -0.252 5.252 12 C -0.024 4.024 13 C -0.012 4.012 14 C 0.036 3.964 15 C -0.125 4.125 16 C -0.098 4.098 17 C -0.154 4.154 18 C 0.143 3.857 19 N -0.676 5.676 20 C 0.502 3.498 21 O -0.491 6.491 22 C 0.049 3.951 23 N -0.833 5.833 24 C -0.099 4.099 25 N -0.271 5.271 26 N -0.075 5.075 27 C -0.170 4.170 28 C -0.187 4.187 29 H 0.264 0.736 30 H 0.072 0.928 31 H 0.126 0.874 32 H 0.184 0.816 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.408 0.592 37 H 0.057 0.943 38 H 0.105 0.895 39 H 0.353 0.647 40 H 0.349 0.651 41 H 0.145 0.855 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.380 -5.857 20.902 22.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.133 4.133 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.525 4.525 8 H 0.080 0.920 9 C 0.025 3.975 10 C 0.027 3.973 11 N -0.042 5.042 12 C -0.178 4.178 13 C -0.149 4.149 14 C 0.033 3.967 15 C -0.145 4.145 16 C -0.117 4.117 17 C -0.174 4.174 18 C 0.049 3.951 19 N -0.323 5.323 20 C 0.288 3.712 21 O -0.362 6.362 22 C -0.086 4.086 23 N -0.366 5.366 24 C -0.120 4.120 25 N -0.137 5.137 26 N -0.054 5.054 27 C -0.208 4.208 28 C -0.225 4.225 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.144 0.856 32 H 0.201 0.799 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.243 0.757 37 H 0.075 0.925 38 H 0.123 0.877 39 H 0.167 0.833 40 H 0.163 0.837 41 H 0.163 0.837 42 H 0.085 0.915 43 H 0.102 0.898 44 H 0.096 0.904 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.113 -7.126 18.845 21.054 hybrid contribution 0.640 2.453 1.458 2.925 sum 6.753 -4.672 20.303 21.901 Atomic orbital electron populations 1.69872 1.05833 1.27287 1.49405 1.24984 0.94938 0.99144 0.94264 0.86503 0.80469 0.83224 0.77834 1.19577 1.20762 1.20665 1.20580 0.93178 0.88470 1.50269 0.91953 1.18957 0.97583 0.92572 0.88428 1.22106 0.89719 1.01018 0.84479 1.47604 1.28385 1.15851 1.12372 1.23433 1.04452 1.02268 0.87622 1.20157 1.02004 0.96648 0.96123 1.17566 0.94801 0.94779 0.89554 1.21121 1.01085 0.97739 0.94555 1.20754 0.96780 0.99080 0.95062 1.20801 1.00591 0.95378 1.00668 1.17569 0.90897 0.92431 0.94202 1.43465 1.27035 1.50282 1.11494 1.20841 0.81846 0.81314 0.87224 1.90833 1.71606 1.58209 1.15537 1.21587 0.94895 0.98284 0.93796 1.58241 1.24768 1.22231 1.31388 1.21209 0.95716 1.00738 0.94336 1.75231 1.19515 1.20805 0.98150 1.78146 1.04911 1.06490 1.15886 1.22862 0.95610 1.03974 0.98376 1.22909 0.96647 0.97518 1.05381 0.92564 0.90976 0.85644 0.79917 0.85555 0.85485 0.86028 0.75677 0.92485 0.87737 0.83257 0.83698 0.83700 0.91465 0.89834 0.90414 0.89868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.96 11.95 55.43 0.66 -22.29 16 2 C 0.07 1.79 5.25 -17.82 -0.09 1.70 16 3 Si 0.89 20.51 29.54 -169.99 -5.02 15.48 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.49 -12.95 8.88 -34.44 -0.31 -13.25 16 8 H 0.06 1.74 7.82 -52.49 -0.41 1.33 16 9 C 0.03 0.62 1.59 -155.67 -0.25 0.37 16 10 C 0.15 3.16 6.25 -4.04 -0.03 3.14 16 11 N -0.25 -5.38 3.43 -60.99 -0.21 -5.59 16 12 C -0.02 -0.46 10.96 -16.70 -0.18 -0.65 16 13 C -0.01 -0.23 6.98 -83.13 -0.58 -0.81 16 14 C 0.04 0.60 5.87 -104.91 -0.62 -0.02 16 15 C -0.13 -1.68 9.58 -39.23 -0.38 -2.05 16 16 C -0.10 -1.07 10.03 -39.66 -0.40 -1.47 16 17 C -0.15 -1.61 9.95 -39.34 -0.39 -2.00 16 18 C 0.14 1.81 6.29 -83.73 -0.53 1.29 16 19 N -0.68 -6.43 5.34 -9.89 -0.05 -6.48 16 20 C 0.50 5.75 7.61 -10.98 -0.08 5.66 16 21 O -0.49 -8.30 13.84 5.55 0.08 -8.22 16 22 C 0.05 0.34 7.27 -4.98 -0.04 0.30 16 23 N -0.83 -7.05 9.25 -11.41 -0.11 -7.15 16 24 C -0.10 -1.63 8.31 -39.06 -0.32 -1.96 16 25 N -0.27 -6.07 12.17 33.06 0.40 -5.67 16 26 N -0.07 -1.70 11.38 60.35 0.69 -1.01 16 27 C -0.17 -3.76 9.88 -26.73 -0.26 -4.03 16 28 C -0.19 -4.19 9.13 -26.73 -0.24 -4.43 16 29 H 0.26 6.55 8.32 -40.82 -0.34 6.21 16 30 H 0.07 1.43 7.93 -51.93 -0.41 1.02 16 31 H 0.13 2.81 6.54 -51.93 -0.34 2.47 16 32 H 0.18 2.87 7.42 -52.49 -0.39 2.48 16 33 H 0.13 1.48 7.13 -52.49 -0.37 1.11 16 34 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.41 2.09 8.81 -40.82 -0.36 1.73 16 37 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.35 3.18 8.69 -39.29 -0.34 2.84 16 40 H 0.35 1.86 9.08 -39.30 -0.36 1.51 16 41 H 0.15 2.79 6.20 -52.49 -0.33 2.46 16 42 H 0.07 1.36 8.07 -51.93 -0.42 0.94 16 43 H 0.08 1.91 8.14 -51.93 -0.42 1.48 16 44 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16 45 H 0.08 1.81 7.35 -51.93 -0.38 1.42 16 LS Contribution 384.10 15.07 5.79 5.79 Total: -1.00 -33.71 384.10 -8.25 -41.96 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -5.78 Total: 11.40 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -4.70 Total: -18.21 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 1.38 Total: -48.20 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.08 Total: -8.22 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.71 -8.25 -41.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594653091.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.119 kcal (2) G-P(sol) polarization free energy of solvation -33.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds