Wall clock time and date at job start Sat Apr 11 2020 06:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00083 * 2 1 4 4 H 1.48507 * 109.46644 * 269.99817 * 3 2 1 5 5 H 1.48496 * 109.47023 * 29.99545 * 3 2 1 6 6 H 1.48490 * 109.47229 * 149.99791 * 3 2 1 7 7 C 1.37880 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99700 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99642 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46638 * 175.03763 * 9 7 2 11 11 C 1.46505 * 119.99869 * 95.17847 * 10 9 7 12 12 C 1.50706 * 109.46768 * 270.00143 * 11 10 9 13 13 C 1.38224 * 119.62277 * 95.00199 * 12 11 10 14 14 C 1.38624 * 119.16379 * 180.02562 * 13 12 11 15 15 C 1.38673 * 118.41961 * 0.02562 * 14 13 12 16 16 C 1.38188 * 119.16567 * 359.97438 * 15 14 13 17 17 N 1.31858 * 119.61403 * 275.01532 * 12 11 10 18 18 C 1.34769 * 120.00264 * 275.17466 * 10 9 7 19 19 O 1.21283 * 120.00305 * 174.68752 * 18 10 9 20 20 C 1.50705 * 120.00320 * 354.68801 * 18 10 9 21 21 H 1.09005 * 109.68479 * 34.98420 * 20 18 10 22 22 C 1.53433 * 109.68884 * 274.44321 * 20 18 10 23 23 C 1.53114 * 109.55250 * 190.55985 * 22 20 18 24 24 C 1.53415 * 109.57746 * 70.05387 * 23 22 20 25 25 C 1.50600 * 108.33761 * 310.17244 * 24 23 22 26 26 N 1.32903 * 129.16609 * 196.56764 * 25 24 23 27 27 N 1.29014 * 108.63572 * 179.85889 * 26 25 24 28 28 N 1.29106 * 110.26041 * 0.02936 * 27 26 25 29 29 H 0.97001 * 126.00550 * 180.02562 * 28 27 26 30 30 C 1.34396 * 107.98224 * 0.06644 * 28 27 26 31 31 H 0.96999 * 119.99992 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.47428 * 55.04366 * 9 7 2 33 33 H 1.09001 * 109.47642 * 295.03525 * 9 7 2 34 34 H 1.08994 * 109.47229 * 150.00001 * 11 10 9 35 35 H 1.09003 * 109.47165 * 29.99504 * 11 10 9 36 36 H 1.08002 * 120.41168 * 359.97438 * 13 12 11 37 37 H 1.08000 * 120.79272 * 180.02562 * 14 13 12 38 38 H 1.07997 * 120.41873 * 180.02562 * 15 14 13 39 39 H 1.07993 * 119.61766 * 179.72320 * 16 15 14 40 40 H 1.08998 * 109.45902 * 310.58348 * 22 20 18 41 41 H 1.08999 * 109.46122 * 70.55513 * 22 20 18 42 42 H 1.09003 * 109.45138 * 190.08870 * 23 22 20 43 43 H 1.09000 * 109.45076 * 310.01893 * 23 22 20 44 44 H 1.09003 * 109.69173 * 69.88762 * 24 23 22 45 45 H 1.09004 * 109.69111 * 190.42596 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6526 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.1985 -3.6101 -0.1183 11 6 2.6795 -4.2945 1.0844 12 6 3.9280 -3.6141 1.5840 13 6 3.8328 -2.6490 2.5689 14 6 4.9872 -2.0289 3.0210 15 6 6.1999 -2.4041 2.4627 16 6 6.2172 -3.3770 1.4815 17 7 5.0987 -3.9463 1.0762 18 6 2.6276 -4.0027 -1.3341 19 8 3.4837 -4.8566 -1.4284 20 6 2.0438 -3.3806 -2.5764 21 1 1.8205 -2.3300 -2.3908 22 6 0.7588 -4.1207 -2.9702 23 6 0.3125 -3.6672 -4.3629 24 6 1.2921 -4.2012 -5.4158 25 6 2.6921 -3.8650 -4.9742 26 7 3.8167 -3.8575 -5.6826 27 7 4.7882 -3.5059 -4.9099 28 7 4.3510 -3.2806 -3.7162 29 1 4.8858 -3.0033 -2.9559 30 6 3.0249 -3.4986 -3.7120 31 1 -0.4850 0.8400 -0.0004 32 1 0.5596 -2.5195 -0.8420 33 1 0.6922 -2.5962 0.9314 34 1 2.9029 -5.3343 0.8460 35 1 1.9110 -4.2557 1.8565 36 1 2.8709 -2.3809 2.9804 37 1 4.9433 -1.2717 3.7898 38 1 7.1192 -1.9423 2.7911 39 1 7.1570 -3.6715 1.0385 40 1 0.9468 -5.1943 -2.9809 41 1 -0.0254 -3.8966 -2.2471 42 1 -0.6863 -4.0528 -4.5675 43 1 0.2958 -2.5780 -4.4019 44 1 1.1842 -5.2824 -5.5031 45 1 1.0877 -3.7329 -6.3787 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597147031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:28 Heat of formation + Delta-G solvation = 85.840011 kcal Electronic energy + Delta-G solvation = -30795.510165 eV Core-core repulsion = 26814.612874 eV Total energy + Delta-G solvation = -3980.897291 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.10544 -40.06528 -39.15638 -36.52941 -35.31551 -33.47187 -32.91651 -32.12107 -31.51183 -30.12266 -29.81951 -27.79026 -26.29035 -24.28125 -23.29610 -22.98555 -22.73743 -22.35435 -21.71848 -19.48131 -18.92634 -17.46434 -16.99373 -16.72704 -16.47048 -15.93084 -15.66858 -15.32866 -15.20478 -14.62623 -14.51854 -14.32326 -13.77515 -13.65066 -13.41350 -13.29650 -13.01581 -12.81279 -12.64499 -12.42260 -11.94855 -11.79504 -11.59240 -11.50299 -11.29497 -11.16090 -11.14990 -11.00341 -10.87415 -10.79331 -10.32617 -10.31361 -9.98475 -9.94631 -9.55744 -9.23093 -9.09558 -8.77330 -8.66375 -8.48261 -7.94425 -6.35549 -4.43021 1.38252 1.62062 1.94853 2.82708 3.08330 3.09391 3.14140 3.18274 3.22182 3.65646 4.16793 4.27716 4.50256 4.61437 4.81489 4.95343 5.00803 5.03705 5.07851 5.11970 5.15782 5.32930 5.37864 5.47414 5.53207 5.63912 5.71695 5.73098 5.81615 5.89860 6.02871 6.03696 6.07875 6.15013 6.22776 6.25080 6.41884 6.44164 6.48217 6.51186 6.52490 6.97400 7.00540 7.19718 7.32404 7.59292 7.86683 8.06866 8.37522 8.61264 8.78626 8.80770 9.25879 10.70643 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009094 B = 0.005279 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3078.303773 B = 5302.625217 C = 6619.027196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.071 3.929 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.057 0.943 9 C 0.233 3.767 10 N -0.588 5.588 11 C 0.170 3.830 12 C 0.122 3.878 13 C -0.134 4.134 14 C -0.082 4.082 15 C -0.180 4.180 16 C 0.086 3.914 17 N -0.460 5.460 18 C 0.521 3.479 19 O -0.546 6.546 20 C -0.040 4.040 21 H 0.134 0.866 22 C -0.101 4.101 23 C -0.117 4.117 24 C -0.030 4.030 25 C -0.027 4.027 26 N -0.266 5.266 27 N -0.100 5.100 28 N -0.366 5.366 29 H 0.448 0.552 30 C 0.032 3.968 31 H 0.267 0.733 32 H 0.046 0.954 33 H 0.037 0.963 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.136 0.864 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.147 0.853 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.194 -4.883 1.903 5.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.133 4.133 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.576 4.576 8 H 0.075 0.925 9 C 0.113 3.887 10 N -0.319 5.319 11 C 0.046 3.954 12 C -0.017 4.017 13 C -0.155 4.155 14 C -0.109 4.109 15 C -0.200 4.200 16 C -0.071 4.071 17 N -0.169 5.169 18 C 0.307 3.693 19 O -0.424 6.424 20 C -0.063 4.063 21 H 0.152 0.848 22 C -0.139 4.139 23 C -0.155 4.155 24 C -0.069 4.069 25 C -0.167 4.167 26 N -0.132 5.132 27 N -0.079 5.079 28 N -0.083 5.083 29 H 0.294 0.706 30 C -0.105 4.105 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.154 0.846 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.164 0.836 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.697 -5.913 0.160 6.501 hybrid contribution 0.124 2.322 2.114 3.143 sum 2.821 -3.590 2.275 5.101 Atomic orbital electron populations 1.69890 1.05819 1.27459 1.49123 1.24869 0.94779 0.99013 0.94624 0.86645 0.79979 0.83372 0.78487 1.20458 1.20884 1.19888 1.21396 0.93354 0.90296 1.52550 0.92460 1.19598 0.87560 0.82589 0.98935 1.48181 1.45308 1.34730 1.03673 1.20151 0.91078 0.96274 0.87909 1.21633 0.93716 0.94300 0.92046 1.21988 0.99481 0.96219 0.97800 1.21510 0.92529 0.98059 0.98761 1.22053 0.98683 0.99862 0.99422 1.22666 0.96644 0.93452 0.94358 1.67582 0.98098 1.26223 1.25023 1.20174 0.82091 0.82329 0.84683 1.90699 1.31560 1.33168 1.86952 1.20096 0.93027 1.04619 0.88546 0.84818 1.21516 0.94743 0.99894 0.97763 1.21637 0.98486 1.02006 0.93404 1.19935 0.86477 1.01410 0.99061 1.21570 0.96861 1.07747 0.90565 1.74702 0.96730 1.16009 1.25712 1.78453 1.21335 1.19782 0.88353 1.44577 1.07353 1.44850 1.11513 0.70618 1.21375 0.85260 1.05720 0.98179 0.92354 0.93572 0.94527 0.89327 0.89264 0.84613 0.85369 0.85591 0.83571 0.91171 0.89486 0.90322 0.90803 0.90218 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.00 13.29 55.43 0.74 -21.26 16 2 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 19.37 29.54 -169.99 -5.02 14.35 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 7 C -0.54 -12.32 8.71 -34.44 -0.30 -12.62 16 8 H 0.06 1.40 7.81 -52.49 -0.41 0.99 16 9 C 0.23 4.71 4.84 -5.19 -0.03 4.68 16 10 N -0.59 -10.80 2.45 -176.42 -0.43 -11.24 16 11 C 0.17 2.84 5.72 -5.19 -0.03 2.81 16 12 C 0.12 2.11 6.36 -82.58 -0.53 1.59 16 13 C -0.13 -2.14 9.72 -39.44 -0.38 -2.52 16 14 C -0.08 -1.17 10.18 -39.28 -0.40 -1.57 16 15 C -0.18 -2.43 10.11 -39.44 -0.40 -2.83 16 16 C 0.09 1.31 11.18 -17.55 -0.20 1.11 16 17 N -0.46 -8.25 10.27 -9.47 -0.10 -8.34 16 18 C 0.52 9.79 6.70 -10.99 -0.07 9.71 16 19 O -0.55 -11.44 15.68 5.56 0.09 -11.36 16 20 C -0.04 -0.68 2.03 -92.78 -0.19 -0.87 16 21 H 0.13 2.52 6.28 -51.93 -0.33 2.20 16 22 C -0.10 -1.42 5.09 -26.45 -0.13 -1.56 16 23 C -0.12 -1.42 5.90 -26.46 -0.16 -1.58 16 24 C -0.03 -0.39 6.30 -27.72 -0.17 -0.56 16 25 C -0.03 -0.46 7.11 -83.13 -0.59 -1.06 16 26 N -0.27 -5.05 12.40 33.16 0.41 -4.64 16 27 N -0.10 -1.91 13.40 60.35 0.81 -1.11 16 28 N -0.37 -6.61 6.65 33.39 0.22 -6.38 16 29 H 0.45 7.58 8.96 -190.07 -1.70 5.87 16 30 C 0.03 0.57 5.94 -82.50 -0.49 0.08 16 31 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 32 H 0.05 0.95 5.55 -51.93 -0.29 0.67 16 33 H 0.04 0.77 7.83 -51.93 -0.41 0.36 16 34 H 0.09 1.51 7.50 -51.93 -0.39 1.12 16 35 H 0.09 1.27 7.76 -51.93 -0.40 0.87 16 36 H 0.14 2.05 8.06 -52.49 -0.42 1.62 16 37 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 40 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 41 H 0.09 1.19 7.07 -51.93 -0.37 0.82 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.95 8.12 -51.93 -0.42 0.52 16 44 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 376.29 15.07 5.67 5.67 Total: -1.00 -29.59 376.29 -9.01 -38.60 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -7.23 Total: 9.27 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -4.16 Total: -3.57 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 1.65 Total: -52.97 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.59 -9.01 -38.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597147031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.437 kcal (2) G-P(sol) polarization free energy of solvation -29.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds