Wall clock time and date at job start Sat Apr 11 2020 06:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00083 * 2 1 4 4 H 1.48507 * 109.46644 * 269.99817 * 3 2 1 5 5 H 1.48496 * 109.47023 * 29.99545 * 3 2 1 6 6 H 1.48490 * 109.47229 * 149.99791 * 3 2 1 7 7 C 1.37880 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99700 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99642 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46638 * 175.03763 * 9 7 2 11 11 C 1.46505 * 119.99869 * 95.17847 * 10 9 7 12 12 C 1.50706 * 109.46768 * 270.00143 * 11 10 9 13 13 C 1.38224 * 119.62277 * 95.00199 * 12 11 10 14 14 C 1.38624 * 119.16379 * 180.02562 * 13 12 11 15 15 C 1.38673 * 118.41961 * 0.02562 * 14 13 12 16 16 C 1.38188 * 119.16567 * 359.97438 * 15 14 13 17 17 N 1.31858 * 119.61403 * 275.01532 * 12 11 10 18 18 C 1.34769 * 120.00264 * 275.17466 * 10 9 7 19 19 O 1.21283 * 120.00305 * 174.68752 * 18 10 9 20 20 C 1.50705 * 120.00320 * 354.68801 * 18 10 9 21 21 H 1.09005 * 109.68479 * 34.98420 * 20 18 10 22 22 C 1.53433 * 109.68884 * 274.44321 * 20 18 10 23 23 C 1.53114 * 109.55250 * 190.55985 * 22 20 18 24 24 C 1.53415 * 109.57746 * 70.05387 * 23 22 20 25 25 C 1.50600 * 108.33761 * 310.17244 * 24 23 22 26 26 N 1.32903 * 129.16609 * 196.56764 * 25 24 23 27 27 N 1.29014 * 108.63572 * 179.85889 * 26 25 24 28 28 N 1.29106 * 110.26041 * 0.02936 * 27 26 25 29 29 H 0.97001 * 126.00550 * 180.02562 * 28 27 26 30 30 C 1.34396 * 107.98224 * 0.06644 * 28 27 26 31 31 H 0.96999 * 119.99992 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.47428 * 55.04366 * 9 7 2 33 33 H 1.09001 * 109.47642 * 295.03525 * 9 7 2 34 34 H 1.08994 * 109.47229 * 150.00001 * 11 10 9 35 35 H 1.09003 * 109.47165 * 29.99504 * 11 10 9 36 36 H 1.08002 * 120.41168 * 359.97438 * 13 12 11 37 37 H 1.08000 * 120.79272 * 180.02562 * 14 13 12 38 38 H 1.07997 * 120.41873 * 180.02562 * 15 14 13 39 39 H 1.07993 * 119.61766 * 179.72320 * 16 15 14 40 40 H 1.08998 * 109.45902 * 310.58348 * 22 20 18 41 41 H 1.08999 * 109.46122 * 70.55513 * 22 20 18 42 42 H 1.09003 * 109.45138 * 190.08870 * 23 22 20 43 43 H 1.09000 * 109.45076 * 310.01893 * 23 22 20 44 44 H 1.09003 * 109.69173 * 69.88762 * 24 23 22 45 45 H 1.09004 * 109.69111 * 190.42596 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6526 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.1985 -3.6101 -0.1183 11 6 2.6795 -4.2945 1.0844 12 6 3.9280 -3.6141 1.5840 13 6 3.8328 -2.6490 2.5689 14 6 4.9872 -2.0289 3.0210 15 6 6.1999 -2.4041 2.4627 16 6 6.2172 -3.3770 1.4815 17 7 5.0987 -3.9463 1.0762 18 6 2.6276 -4.0027 -1.3341 19 8 3.4837 -4.8566 -1.4284 20 6 2.0438 -3.3806 -2.5764 21 1 1.8205 -2.3300 -2.3908 22 6 0.7588 -4.1207 -2.9702 23 6 0.3125 -3.6672 -4.3629 24 6 1.2921 -4.2012 -5.4158 25 6 2.6921 -3.8650 -4.9742 26 7 3.8167 -3.8575 -5.6826 27 7 4.7882 -3.5059 -4.9099 28 7 4.3510 -3.2806 -3.7162 29 1 4.8858 -3.0033 -2.9559 30 6 3.0249 -3.4986 -3.7120 31 1 -0.4850 0.8400 -0.0004 32 1 0.5596 -2.5195 -0.8420 33 1 0.6922 -2.5962 0.9314 34 1 2.9029 -5.3343 0.8460 35 1 1.9110 -4.2557 1.8565 36 1 2.8709 -2.3809 2.9804 37 1 4.9433 -1.2717 3.7898 38 1 7.1192 -1.9423 2.7911 39 1 7.1570 -3.6715 1.0385 40 1 0.9468 -5.1943 -2.9809 41 1 -0.0254 -3.8966 -2.2471 42 1 -0.6863 -4.0528 -4.5675 43 1 0.2958 -2.5780 -4.4019 44 1 1.1842 -5.2824 -5.5031 45 1 1.0877 -3.7329 -6.3787 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597147031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:27 Heat of formation + Delta-G solvation = 68.371037 kcal Electronic energy + Delta-G solvation = -30796.267677 eV Core-core repulsion = 26814.612874 eV Total energy + Delta-G solvation = -3981.654803 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.50081 -41.37354 -40.51093 -37.73802 -36.86716 -34.90067 -34.59824 -33.34749 -32.81065 -31.35664 -31.11200 -29.41667 -27.66034 -25.60454 -24.80713 -24.29443 -24.12338 -23.60850 -22.96381 -20.74815 -20.30611 -18.94428 -18.56510 -18.27194 -17.71902 -17.20384 -17.07860 -16.77042 -16.51610 -16.19027 -15.81408 -15.66048 -15.03137 -14.86794 -14.64641 -14.56620 -14.34712 -14.11814 -14.02991 -13.87949 -13.46377 -13.17281 -13.07894 -12.83807 -12.71359 -12.59167 -12.52915 -12.44651 -12.25951 -12.03629 -11.92793 -11.73596 -11.53196 -11.30676 -10.78444 -10.69507 -10.54650 -10.33492 -9.93434 -9.84045 -9.47316 -8.19627 -6.29640 0.20122 0.45294 0.53013 1.34185 1.40921 1.44742 1.45405 1.64407 1.75233 2.24192 2.40183 3.03317 3.12367 3.20947 3.44062 3.56832 3.63917 3.85391 3.90300 3.96658 4.03720 4.19733 4.26655 4.30530 4.34920 4.45342 4.48157 4.51857 4.60746 4.70557 4.81084 4.88656 4.90826 4.96148 5.03085 5.11987 5.18147 5.26463 5.26991 5.33088 5.37117 5.44265 5.67019 5.79874 5.82809 5.86045 6.08827 6.50343 6.82483 7.17610 7.26624 7.37224 7.42359 8.85317 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009094 B = 0.005279 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3078.303773 B = 5302.625217 C = 6619.027196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.038 3.962 3 Si 0.930 3.070 4 H -0.284 1.284 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.039 0.961 9 C 0.247 3.753 10 N -0.585 5.585 11 C 0.167 3.833 12 C 0.101 3.899 13 C -0.147 4.147 14 C -0.087 4.087 15 C -0.171 4.171 16 C 0.071 3.929 17 N -0.494 5.494 18 C 0.520 3.480 19 O -0.570 6.570 20 C -0.033 4.033 21 H 0.115 0.885 22 C -0.098 4.098 23 C -0.109 4.109 24 C -0.030 4.030 25 C -0.025 4.025 26 N -0.284 5.284 27 N -0.118 5.118 28 N -0.366 5.366 29 H 0.449 0.551 30 C 0.017 3.983 31 H 0.267 0.733 32 H 0.045 0.955 33 H 0.033 0.967 34 H 0.081 0.919 35 H 0.110 0.890 36 H 0.139 0.861 37 H 0.156 0.844 38 H 0.162 0.838 39 H 0.167 0.833 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.114 0.886 43 H 0.066 0.934 44 H 0.097 0.903 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.821 -4.564 2.130 5.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.163 4.163 3 Si 0.758 3.242 4 H -0.211 1.211 5 H -0.206 1.206 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.058 0.942 9 C 0.126 3.874 10 N -0.315 5.315 11 C 0.043 3.957 12 C -0.037 4.037 13 C -0.167 4.167 14 C -0.113 4.113 15 C -0.190 4.190 16 C -0.086 4.086 17 N -0.204 5.204 18 C 0.308 3.692 19 O -0.450 6.450 20 C -0.056 4.056 21 H 0.133 0.867 22 C -0.137 4.137 23 C -0.147 4.147 24 C -0.069 4.069 25 C -0.166 4.166 26 N -0.150 5.150 27 N -0.096 5.096 28 N -0.084 5.084 29 H 0.295 0.705 30 C -0.121 4.121 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.099 0.901 35 H 0.128 0.872 36 H 0.156 0.844 37 H 0.173 0.827 38 H 0.179 0.821 39 H 0.184 0.816 40 H 0.091 0.909 41 H 0.110 0.890 42 H 0.132 0.868 43 H 0.084 0.916 44 H 0.115 0.885 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.329 -5.593 0.396 6.072 hybrid contribution 0.329 2.206 2.091 3.058 sum 2.658 -3.387 2.487 4.972 Atomic orbital electron populations 1.69937 1.06444 1.27842 1.50301 1.25296 0.95269 1.00866 0.94903 0.85986 0.79027 0.81319 0.77916 1.21058 1.20563 1.20158 1.21422 0.92460 0.91417 1.51408 0.94237 1.19325 0.87400 0.82112 0.98524 1.48121 1.44906 1.34180 1.04308 1.20291 0.91954 0.95638 0.87772 1.21652 0.93653 0.95344 0.93088 1.22112 1.00460 0.96322 0.97839 1.21913 0.92179 0.98170 0.99074 1.22424 0.99902 0.98682 0.98038 1.23127 0.96670 0.93838 0.94938 1.67539 0.99033 1.27608 1.26208 1.20454 0.81620 0.81967 0.85201 1.90683 1.32603 1.34426 1.87273 1.20065 0.94217 1.03638 0.87690 0.86705 1.21575 0.93144 0.99604 0.99336 1.21639 0.99901 1.01611 0.91570 1.20172 0.83954 1.02716 1.00024 1.22299 0.98101 1.06170 0.90007 1.74681 0.97407 1.16722 1.26165 1.78413 1.21832 1.20655 0.88737 1.44633 1.07744 1.44618 1.11375 0.70502 1.21659 0.85200 1.06333 0.98863 0.92362 0.93681 0.94889 0.90110 0.87194 0.84356 0.82680 0.82062 0.81613 0.90930 0.89000 0.86801 0.91550 0.88491 0.88206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.51 13.29 21.45 0.28 -44.22 16 2 C 0.04 1.81 5.46 84.66 0.46 2.28 16 3 Si 0.93 39.29 29.54 68.60 2.03 41.32 16 4 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 6 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.53 -24.15 8.71 25.60 0.22 -23.93 16 8 H 0.04 1.94 7.81 -2.91 -0.02 1.92 16 9 C 0.25 9.95 4.84 85.63 0.41 10.36 16 10 N -0.59 -21.61 2.45 -830.47 -2.04 -23.65 16 11 C 0.17 5.63 5.72 85.63 0.49 6.12 16 12 C 0.10 3.50 6.36 42.55 0.27 3.77 16 13 C -0.15 -4.58 9.72 22.36 0.22 -4.36 16 14 C -0.09 -2.32 10.18 22.47 0.23 -2.09 16 15 C -0.17 -4.24 10.11 22.36 0.23 -4.01 16 16 C 0.07 2.09 11.18 84.67 0.95 3.04 16 17 N -0.49 -17.78 10.27 -183.88 -1.89 -19.67 16 18 C 0.52 19.72 6.70 87.66 0.59 20.31 16 19 O -0.57 -24.29 15.68 -3.04 -0.05 -24.34 16 20 C -0.03 -1.12 2.03 -12.19 -0.02 -1.15 16 21 H 0.12 4.37 6.28 -2.38 -0.01 4.36 16 22 C -0.10 -2.63 5.09 30.78 0.16 -2.48 16 23 C -0.11 -2.37 5.90 30.77 0.18 -2.19 16 24 C -0.03 -0.70 6.30 29.96 0.19 -0.51 16 25 C -0.02 -0.83 7.11 41.75 0.30 -0.53 16 26 N -0.28 -10.71 12.40 -48.99 -0.61 -11.32 16 27 N -0.12 -4.54 13.40 37.02 0.50 -4.05 16 28 N -0.37 -13.44 6.65 -48.28 -0.32 -13.77 16 29 H 0.45 15.72 8.96 -219.68 -1.97 13.75 16 30 C 0.02 0.60 5.94 41.50 0.25 0.85 16 31 H 0.27 12.69 8.31 -92.71 -0.77 11.92 16 32 H 0.05 1.85 5.55 -2.39 -0.01 1.84 16 33 H 0.03 1.37 7.83 -2.39 -0.02 1.35 16 34 H 0.08 2.82 7.50 -2.39 -0.02 2.80 16 35 H 0.11 3.12 7.76 -2.39 -0.02 3.10 16 36 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 37 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 38 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 39 H 0.17 3.97 8.06 -2.91 -0.02 3.95 16 40 H 0.07 1.92 8.08 -2.39 -0.02 1.90 16 41 H 0.09 2.37 7.07 -2.39 -0.02 2.36 16 42 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.07 1.56 8.12 -2.39 -0.02 1.54 16 44 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -63.23 376.29 2.08 -61.15 By element: Atomic # 1 Polarization: 33.99 SS G_CDS: -0.93 Total: 33.05 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 5.11 Total: 5.49 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -4.07 Total: -116.67 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.05 Total: -24.34 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Total: -63.23 2.08 -61.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597147031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.521 kcal (2) G-P(sol) polarization free energy of solvation -63.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds