Wall clock time and date at job start Sat Apr 11 2020 06:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 119.99901 * 2 1 4 4 H 1.48498 * 109.47136 * 239.99915 * 3 2 1 5 5 H 1.48504 * 109.47221 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46794 * 119.99771 * 3 2 1 7 7 C 1.38807 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00212 * 198.33634 * 7 2 1 9 9 N 1.36940 * 119.99975 * 18.33824 * 7 2 1 10 10 C 1.46965 * 120.59085 * 213.33918 * 9 7 2 11 11 C 1.53370 * 108.63623 * 235.24595 * 10 9 7 12 12 N 1.46968 * 108.63341 * 310.58100 * 11 10 9 13 13 C 1.34775 * 120.59126 * 235.19646 * 12 11 10 14 14 O 1.21555 * 119.99957 * 5.94182 * 13 12 11 15 15 C 1.47841 * 120.00159 * 185.93386 * 13 12 11 16 16 C 1.39597 * 120.14254 * 42.90186 * 15 13 12 17 17 C 1.37939 * 119.85515 * 179.97438 * 16 15 13 18 18 C 1.38381 * 120.14255 * 359.97438 * 17 16 15 19 19 C 1.38337 * 120.29231 * 359.71990 * 18 17 16 20 20 C 1.50707 * 119.92776 * 180.28079 * 19 18 17 21 21 N 1.46499 * 109.47132 * 270.27964 * 20 19 18 22 22 C 1.34434 * 126.82045 * 124.99609 * 21 20 19 23 23 N 1.30837 * 108.07312 * 179.97438 * 22 21 20 24 24 C 1.33239 * 109.82872 * 0.02562 * 23 22 21 25 25 N 1.30712 * 108.94922 * 359.75195 * 24 23 22 26 26 C 1.37979 * 120.14351 * 0.56516 * 19 18 17 27 27 C 1.46965 * 118.81471 * 55.47957 * 12 11 10 28 28 C 1.46962 * 120.59607 * 33.36172 * 9 7 2 29 29 H 0.96995 * 119.99787 * 0.02562 * 1 2 3 30 30 H 1.09010 * 109.60861 * 115.50467 * 10 9 7 31 31 H 1.08995 * 109.75129 * 355.07824 * 10 9 7 32 32 H 1.09001 * 109.61140 * 190.83289 * 11 10 9 33 33 H 1.09006 * 109.74962 * 70.40726 * 11 10 9 34 34 H 1.08006 * 120.07485 * 359.94900 * 16 15 13 35 35 H 1.08000 * 119.92974 * 179.97438 * 17 16 15 36 36 H 1.08002 * 119.85179 * 180.02562 * 18 17 16 37 37 H 1.08997 * 109.46765 * 30.27926 * 20 19 18 38 38 H 1.08992 * 109.46907 * 150.27944 * 20 19 18 39 39 H 1.07993 * 125.96452 * 0.02562 * 22 21 20 40 40 H 1.08005 * 125.52392 * 179.97438 * 24 23 22 41 41 H 1.08009 * 120.06910 * 179.71849 * 26 19 18 42 42 H 1.08997 * 109.61081 * 64.25789 * 27 12 11 43 43 H 1.08993 * 109.61119 * 184.77845 * 27 12 11 44 44 H 1.09000 * 109.61062 * 244.49604 * 28 9 7 45 45 H 1.09001 * 109.60991 * 5.00803 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0492 -1.2258 0.2948 9 7 1.3777 -2.3581 -0.3721 10 6 1.7349 -3.6403 0.2510 11 6 2.1161 -4.6329 -0.8543 12 7 1.0683 -4.6135 -1.8847 13 6 0.4464 -5.7514 -2.2521 14 8 0.6722 -6.7869 -1.6567 15 6 -0.5104 -5.7402 -3.3791 16 6 -0.2107 -5.0353 -4.5461 17 6 -1.1075 -5.0293 -5.5942 18 6 -2.3018 -5.7205 -5.4907 19 6 -2.6022 -6.4262 -4.3394 20 6 -3.9025 -7.1813 -4.2380 21 7 -4.9353 -6.3028 -3.6832 22 6 -6.1294 -6.0174 -4.2307 23 7 -6.7585 -5.1977 -3.4281 24 6 -6.0010 -4.9378 -2.3632 25 7 -4.8767 -5.5955 -2.4713 26 6 -1.7164 -6.4355 -3.2815 27 6 0.7152 -3.3322 -2.5118 28 6 0.3300 -2.3388 -1.4024 29 1 -0.4849 0.8400 -0.0004 30 1 0.8821 -4.0254 0.8103 31 1 2.5805 -3.4999 0.9241 32 1 2.1972 -5.6353 -0.4338 33 1 3.0695 -4.3435 -1.2965 34 1 0.7212 -4.4954 -4.6281 35 1 -0.8770 -4.4840 -6.4975 36 1 -3.0004 -5.7130 -6.3143 37 1 -4.2056 -7.5175 -5.2295 38 1 -3.7713 -8.0448 -3.5859 39 1 -6.5045 -6.3988 -5.1689 40 1 -6.2735 -4.2914 -1.5419 41 1 -1.9541 -6.9832 -2.3814 42 1 1.5705 -2.9493 -3.0685 43 1 -0.1291 -3.4752 -3.1861 44 1 -0.6227 -2.6311 -0.9609 45 1 0.2489 -1.3364 -1.8229 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599538828.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:36 Heat of formation + Delta-G solvation = 124.985001 kcal Electronic energy + Delta-G solvation = -29411.188606 eV Core-core repulsion = 25431.988769 eV Total energy + Delta-G solvation = -3979.199837 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.17264 -40.34676 -38.66099 -36.76171 -34.94122 -33.86363 -31.93870 -31.31843 -31.23520 -30.86636 -30.10145 -27.09412 -26.84127 -24.41957 -23.29188 -22.84412 -22.48226 -22.03257 -21.58445 -20.39007 -18.90032 -17.68063 -17.23405 -16.57599 -16.31503 -15.97953 -15.78797 -15.29096 -15.05425 -14.81434 -14.53154 -14.39140 -14.18647 -13.73530 -13.57752 -13.45973 -13.35587 -13.19811 -13.06028 -12.78375 -12.31025 -12.09544 -11.71360 -11.60165 -11.46268 -11.34393 -10.82801 -10.80136 -10.53008 -10.28776 -10.19991 -10.10685 -9.94330 -9.87821 -9.85552 -9.55605 -9.08455 -8.95088 -8.59174 -8.28954 -6.67310 -5.87864 -3.36389 0.78232 1.08523 1.51776 2.22148 2.86562 2.92719 3.30645 3.33256 3.39640 3.40688 3.70925 4.05931 4.15816 4.33123 4.42723 4.60351 4.69946 4.75960 4.82887 4.97367 5.07511 5.12210 5.26008 5.32467 5.34601 5.57931 5.75568 5.77654 5.82338 5.90222 6.05257 6.06602 6.12316 6.17797 6.20575 6.23860 6.31252 6.33142 6.40499 6.60056 6.67211 6.78920 6.89333 7.15281 7.35585 7.72567 7.82504 7.95289 8.37011 8.44453 9.09845 9.71737 10.32724 11.19607 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011519 B = 0.003186 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.128915 B = 8787.383044 C = 9975.436799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.011 3.989 3 Si 0.902 3.098 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.265 4.265 8 H 0.065 0.935 9 N -0.589 5.589 10 C 0.132 3.868 11 C 0.096 3.904 12 N -0.587 5.587 13 C 0.553 3.447 14 O -0.552 6.552 15 C -0.118 4.118 16 C -0.073 4.073 17 C -0.129 4.129 18 C -0.083 4.083 19 C -0.125 4.125 20 C 0.175 3.825 21 N -0.377 5.377 22 C 0.248 3.752 23 N -0.548 5.548 24 C 0.197 3.803 25 N -0.303 5.303 26 C -0.031 4.031 27 C 0.073 3.927 28 C 0.164 3.836 29 H 0.256 0.744 30 H 0.024 0.976 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.124 0.876 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.216 0.784 40 H 0.217 0.783 41 H 0.131 0.869 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.026 0.974 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.855 -13.430 -14.442 21.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.189 4.189 3 Si 0.731 3.269 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.394 4.394 8 H 0.082 0.918 9 N -0.311 5.311 10 C 0.005 3.995 11 C -0.028 4.028 12 N -0.318 5.318 13 C 0.341 3.659 14 O -0.432 6.432 15 C -0.121 4.121 16 C -0.091 4.091 17 C -0.147 4.147 18 C -0.101 4.101 19 C -0.126 4.126 20 C 0.053 3.947 21 N -0.168 5.168 22 C -0.049 4.049 23 N -0.275 5.275 24 C -0.106 4.106 25 N -0.130 5.130 26 C -0.050 4.050 27 C -0.051 4.051 28 C 0.037 3.963 29 H 0.066 0.934 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.142 0.858 37 H 0.129 0.871 38 H 0.117 0.883 39 H 0.233 0.767 40 H 0.233 0.767 41 H 0.149 0.851 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.044 0.956 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.538 -13.688 -13.624 20.732 hybrid contribution 0.385 0.990 -0.234 1.088 sum -7.153 -12.697 -13.859 20.111 Atomic orbital electron populations 1.70049 1.05410 1.25973 1.52371 1.25188 0.95192 0.98700 0.99827 0.86392 0.79024 0.83182 0.78272 1.20864 1.21566 1.20708 1.19082 0.92916 0.84779 1.42654 0.91764 1.43919 1.43649 1.02584 1.40997 1.21299 0.98587 0.86940 0.92690 1.22264 0.89241 1.01240 0.90075 1.47965 1.37620 1.07198 1.39050 1.18300 0.80722 0.83691 0.83227 1.90730 1.65240 1.31774 1.55490 1.19959 0.96187 1.00548 0.95400 1.21510 0.99815 0.95575 0.92241 1.21051 0.94251 1.00356 0.99060 1.21116 0.96762 0.95414 0.96856 1.19575 0.95674 1.02030 0.95296 1.20651 0.83559 0.90508 0.99947 1.50690 1.14333 1.36010 1.15811 1.26048 0.83877 0.95150 0.99838 1.70532 1.33315 1.18547 1.05124 1.26075 0.87994 0.98877 0.97685 1.78210 1.22638 1.12134 0.99994 1.21005 0.91301 0.95137 0.97598 1.23035 1.00024 0.84101 0.97944 1.21131 0.90650 0.97158 0.87381 0.93385 0.95814 0.91415 0.89902 0.91750 0.84871 0.85140 0.85804 0.87059 0.88287 0.76720 0.76700 0.85071 0.91674 0.90378 0.95568 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.53 11.66 55.49 0.65 -24.89 16 2 C 0.01 0.30 4.84 -17.43 -0.08 0.22 16 3 Si 0.90 21.07 29.59 -169.99 -5.03 16.04 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.26 -7.08 9.51 -15.06 -0.14 -7.22 16 8 H 0.06 1.68 7.89 -52.49 -0.41 1.27 16 9 N -0.59 -14.50 2.93 -171.76 -0.50 -15.00 16 10 C 0.13 2.82 6.67 -3.60 -0.02 2.80 16 11 C 0.10 1.78 6.60 -3.60 -0.02 1.76 16 12 N -0.59 -10.88 2.94 -173.32 -0.51 -11.39 16 13 C 0.55 10.09 7.29 -12.33 -0.09 10.00 16 14 O -0.55 -11.47 16.37 5.32 0.09 -11.38 16 15 C -0.12 -1.77 5.05 -104.97 -0.53 -2.30 16 16 C -0.07 -0.90 7.40 -39.18 -0.29 -1.19 16 17 C -0.13 -1.28 10.03 -39.64 -0.40 -1.68 16 18 C -0.08 -0.75 9.69 -39.49 -0.38 -1.13 16 19 C -0.12 -1.28 5.34 -104.68 -0.56 -1.84 16 20 C 0.17 1.28 6.67 -5.19 -0.03 1.25 16 21 N -0.38 -3.81 3.68 -63.81 -0.23 -4.04 16 22 C 0.25 2.16 12.63 -90.65 -1.14 1.01 16 23 N -0.55 -6.49 11.19 -15.83 -0.18 -6.67 16 24 C 0.20 2.45 13.03 -91.82 -1.20 1.25 16 25 N -0.30 -4.14 12.56 29.29 0.37 -3.78 16 26 C -0.03 -0.42 9.32 -39.19 -0.37 -0.78 16 27 C 0.07 1.32 5.22 -3.36 -0.02 1.31 16 28 C 0.16 3.78 5.51 -3.37 -0.02 3.76 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.02 0.54 8.14 -51.92 -0.42 0.12 16 31 H 0.07 1.38 7.94 -51.93 -0.41 0.96 16 32 H 0.08 1.51 6.99 -51.93 -0.36 1.15 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.13 1.56 6.84 -52.48 -0.36 1.21 16 35 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 37 H 0.11 0.35 8.03 -51.93 -0.42 -0.06 16 38 H 0.10 0.68 8.08 -51.93 -0.42 0.26 16 39 H 0.22 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.22 2.12 8.06 -52.48 -0.42 1.70 16 41 H 0.13 1.89 8.06 -52.48 -0.42 1.46 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.08 1.28 4.77 -51.93 -0.25 1.03 16 44 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.09 2.21 6.43 -51.93 -0.33 1.88 16 LS Contribution 375.18 15.07 5.65 5.65 Total: -1.00 -35.40 375.18 -10.91 -46.30 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.91 Total: 1.95 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: -5.30 Total: 7.20 kcal Atomic # 7 Polarization: -65.36 SS G_CDS: -0.41 Total: -65.77 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.40 -10.91 -46.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599538828.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.289 kcal (2) G-P(sol) polarization free energy of solvation -35.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds