Wall clock time and date at job start Sat Apr 11 2020 06:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 119.99901 * 2 1 4 4 H 1.48498 * 109.47136 * 239.99915 * 3 2 1 5 5 H 1.48504 * 109.47221 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46794 * 119.99771 * 3 2 1 7 7 C 1.38807 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00212 * 198.33634 * 7 2 1 9 9 N 1.36940 * 119.99975 * 18.33824 * 7 2 1 10 10 C 1.46965 * 120.59085 * 213.33918 * 9 7 2 11 11 C 1.53370 * 108.63623 * 235.24595 * 10 9 7 12 12 N 1.46968 * 108.63341 * 310.58100 * 11 10 9 13 13 C 1.34775 * 120.59126 * 235.19646 * 12 11 10 14 14 O 1.21555 * 119.99957 * 5.94182 * 13 12 11 15 15 C 1.47841 * 120.00159 * 185.93386 * 13 12 11 16 16 C 1.39597 * 120.14254 * 42.90186 * 15 13 12 17 17 C 1.37939 * 119.85515 * 179.97438 * 16 15 13 18 18 C 1.38381 * 120.14255 * 359.97438 * 17 16 15 19 19 C 1.38337 * 120.29231 * 359.71990 * 18 17 16 20 20 C 1.50707 * 119.92776 * 180.28079 * 19 18 17 21 21 N 1.46499 * 109.47132 * 270.27964 * 20 19 18 22 22 C 1.34434 * 126.82045 * 124.99609 * 21 20 19 23 23 N 1.30837 * 108.07312 * 179.97438 * 22 21 20 24 24 C 1.33239 * 109.82872 * 0.02562 * 23 22 21 25 25 N 1.30712 * 108.94922 * 359.75195 * 24 23 22 26 26 C 1.37979 * 120.14351 * 0.56516 * 19 18 17 27 27 C 1.46965 * 118.81471 * 55.47957 * 12 11 10 28 28 C 1.46962 * 120.59607 * 33.36172 * 9 7 2 29 29 H 0.96995 * 119.99787 * 0.02562 * 1 2 3 30 30 H 1.09010 * 109.60861 * 115.50467 * 10 9 7 31 31 H 1.08995 * 109.75129 * 355.07824 * 10 9 7 32 32 H 1.09001 * 109.61140 * 190.83289 * 11 10 9 33 33 H 1.09006 * 109.74962 * 70.40726 * 11 10 9 34 34 H 1.08006 * 120.07485 * 359.94900 * 16 15 13 35 35 H 1.08000 * 119.92974 * 179.97438 * 17 16 15 36 36 H 1.08002 * 119.85179 * 180.02562 * 18 17 16 37 37 H 1.08997 * 109.46765 * 30.27926 * 20 19 18 38 38 H 1.08992 * 109.46907 * 150.27944 * 20 19 18 39 39 H 1.07993 * 125.96452 * 0.02562 * 22 21 20 40 40 H 1.08005 * 125.52392 * 179.97438 * 24 23 22 41 41 H 1.08009 * 120.06910 * 179.71849 * 26 19 18 42 42 H 1.08997 * 109.61081 * 64.25789 * 27 12 11 43 43 H 1.08993 * 109.61119 * 184.77845 * 27 12 11 44 44 H 1.09000 * 109.61062 * 244.49604 * 28 9 7 45 45 H 1.09001 * 109.60991 * 5.00803 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0492 -1.2258 0.2948 9 7 1.3777 -2.3581 -0.3721 10 6 1.7349 -3.6403 0.2510 11 6 2.1161 -4.6329 -0.8543 12 7 1.0683 -4.6135 -1.8847 13 6 0.4464 -5.7514 -2.2521 14 8 0.6722 -6.7869 -1.6567 15 6 -0.5104 -5.7402 -3.3791 16 6 -0.2107 -5.0353 -4.5461 17 6 -1.1075 -5.0293 -5.5942 18 6 -2.3018 -5.7205 -5.4907 19 6 -2.6022 -6.4262 -4.3394 20 6 -3.9025 -7.1813 -4.2380 21 7 -4.9353 -6.3028 -3.6832 22 6 -6.1294 -6.0174 -4.2307 23 7 -6.7585 -5.1977 -3.4281 24 6 -6.0010 -4.9378 -2.3632 25 7 -4.8767 -5.5955 -2.4713 26 6 -1.7164 -6.4355 -3.2815 27 6 0.7152 -3.3322 -2.5118 28 6 0.3300 -2.3388 -1.4024 29 1 -0.4849 0.8400 -0.0004 30 1 0.8821 -4.0254 0.8103 31 1 2.5805 -3.4999 0.9241 32 1 2.1972 -5.6353 -0.4338 33 1 3.0695 -4.3435 -1.2965 34 1 0.7212 -4.4954 -4.6281 35 1 -0.8770 -4.4840 -6.4975 36 1 -3.0004 -5.7130 -6.3143 37 1 -4.2056 -7.5175 -5.2295 38 1 -3.7713 -8.0448 -3.5859 39 1 -6.5045 -6.3988 -5.1689 40 1 -6.2735 -4.2914 -1.5419 41 1 -1.9541 -6.9832 -2.3814 42 1 1.5705 -2.9493 -3.0685 43 1 -0.1291 -3.4752 -3.1861 44 1 -0.6227 -2.6311 -0.9609 45 1 0.2489 -1.3364 -1.8229 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599538828.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:35 Heat of formation + Delta-G solvation = 104.469026 kcal Electronic energy + Delta-G solvation = -29412.078245 eV Core-core repulsion = 25431.988769 eV Total energy + Delta-G solvation = -3980.089476 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.94111 -41.59532 -39.77964 -38.43909 -35.89776 -35.45354 -33.46900 -32.40150 -32.12404 -32.08615 -31.61276 -28.81024 -27.62014 -26.00304 -24.82285 -24.20966 -23.47142 -22.83261 -22.53306 -21.81709 -20.37972 -18.98419 -18.21704 -17.75196 -17.65474 -17.12287 -16.86913 -16.69388 -16.45300 -15.93287 -15.76922 -15.56495 -15.36615 -15.20630 -15.08106 -14.91702 -14.63930 -14.31270 -14.14814 -13.69593 -13.64006 -13.35092 -13.11125 -12.88690 -12.64400 -12.60115 -12.53454 -12.34043 -12.23149 -12.09980 -11.98980 -11.72090 -11.05535 -10.96053 -10.77244 -10.63055 -10.61130 -10.04501 -9.89300 -9.83328 -8.66739 -7.92898 -5.46504 -0.11965 0.19859 0.78136 1.47769 1.48701 1.49820 1.56982 1.65957 1.96918 2.05692 2.48677 2.75079 3.21570 3.36154 3.42700 3.53305 3.57095 3.73011 3.91452 4.06322 4.10982 4.16135 4.17218 4.26236 4.29399 4.32179 4.44808 4.48274 4.53694 4.58398 4.68988 4.73503 4.79632 4.92183 4.98557 5.11320 5.25501 5.30739 5.34639 5.39086 5.42115 5.47995 5.51143 5.61750 5.84768 6.01523 6.32902 6.34670 6.99564 7.06071 7.17505 7.71779 8.30315 9.12272 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011519 B = 0.003186 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.128915 B = 8787.383044 C = 9975.436799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.039 4.039 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.294 1.294 6 H -0.276 1.276 7 C -0.276 4.276 8 H 0.069 0.931 9 N -0.605 5.605 10 C 0.132 3.868 11 C 0.105 3.895 12 N -0.594 5.594 13 C 0.550 3.450 14 O -0.586 6.586 15 C -0.149 4.149 16 C -0.082 4.082 17 C -0.124 4.124 18 C -0.068 4.068 19 C -0.121 4.121 20 C 0.170 3.830 21 N -0.379 5.379 22 C 0.265 3.735 23 N -0.580 5.580 24 C 0.186 3.814 25 N -0.355 5.355 26 C -0.051 4.051 27 C 0.094 3.906 28 C 0.171 3.829 29 H 0.253 0.747 30 H 0.000 1.000 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.137 0.863 35 H 0.164 0.836 36 H 0.169 0.831 37 H 0.169 0.831 38 H 0.098 0.902 39 H 0.271 0.729 40 H 0.223 0.777 41 H 0.106 0.894 42 H 0.082 0.918 43 H 0.100 0.900 44 H -0.011 1.011 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.215 -13.852 -18.370 24.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.236 4.236 3 Si 0.797 3.203 4 H -0.197 1.197 5 H -0.221 1.221 6 H -0.202 1.202 7 C -0.406 4.406 8 H 0.087 0.913 9 N -0.328 5.328 10 C 0.006 3.994 11 C -0.018 4.018 12 N -0.325 5.325 13 C 0.341 3.659 14 O -0.469 6.469 15 C -0.152 4.152 16 C -0.101 4.101 17 C -0.141 4.141 18 C -0.087 4.087 19 C -0.122 4.122 20 C 0.050 3.950 21 N -0.170 5.170 22 C -0.031 4.031 23 N -0.308 5.308 24 C -0.117 4.117 25 N -0.183 5.183 26 C -0.071 4.071 27 C -0.029 4.029 28 C 0.045 3.955 29 H 0.062 0.938 30 H 0.018 0.982 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.155 0.845 35 H 0.182 0.818 36 H 0.187 0.813 37 H 0.186 0.814 38 H 0.116 0.884 39 H 0.287 0.713 40 H 0.239 0.761 41 H 0.124 0.876 42 H 0.100 0.900 43 H 0.117 0.883 44 H 0.008 0.992 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.873 -14.140 -17.566 23.885 hybrid contribution 0.418 1.021 0.976 1.473 sum -7.455 -13.118 -16.591 22.426 Atomic orbital electron populations 1.70209 1.07002 1.26407 1.53927 1.25969 0.95868 1.01887 0.99828 0.85318 0.77602 0.78740 0.78593 1.19716 1.22065 1.20193 1.19438 0.93278 0.85685 1.42155 0.91328 1.44186 1.43667 1.03129 1.41860 1.21357 0.97946 0.86422 0.93716 1.22088 0.90004 1.00308 0.89441 1.48028 1.37775 1.07512 1.39138 1.18917 0.80483 0.82856 0.83674 1.90690 1.66291 1.32839 1.57050 1.19807 0.96425 1.03576 0.95400 1.21619 1.00795 0.95549 0.92121 1.21487 0.93727 0.99775 0.99141 1.21654 0.96846 0.93027 0.97149 1.19871 0.96033 1.01797 0.94522 1.21039 0.81806 0.89380 1.02737 1.50776 1.15396 1.35968 1.14836 1.27067 0.82643 0.93014 1.00365 1.70531 1.34259 1.20316 1.05675 1.26328 0.88033 0.98966 0.98408 1.78137 1.23743 1.13782 1.02601 1.20992 0.92101 0.95739 0.98250 1.22781 1.01452 0.82596 0.96109 1.20933 0.89009 0.97291 0.88290 0.93831 0.98156 0.90508 0.89629 0.90100 0.84512 0.81819 0.81306 0.81358 0.88417 0.71339 0.76099 0.87558 0.90029 0.88258 0.99246 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.79 11.66 21.65 0.25 -54.53 16 2 C -0.04 -2.12 4.84 84.86 0.41 -1.71 16 3 Si 0.97 43.64 29.59 68.60 2.03 45.67 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 6 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.28 -14.95 9.51 84.03 0.80 -14.15 16 8 H 0.07 3.59 7.89 -2.91 -0.02 3.57 16 9 N -0.60 -30.68 2.93 -697.34 -2.05 -32.73 16 10 C 0.13 5.84 6.67 86.41 0.58 6.42 16 11 C 0.11 3.99 6.60 86.41 0.57 4.56 16 12 N -0.59 -22.44 2.94 -820.55 -2.41 -24.85 16 13 C 0.55 20.76 7.29 86.79 0.63 21.40 16 14 O -0.59 -25.48 16.37 -3.89 -0.06 -25.54 16 15 C -0.15 -4.49 5.05 -20.09 -0.10 -4.59 16 16 C -0.08 -1.89 7.40 22.53 0.17 -1.73 16 17 C -0.12 -1.97 10.03 22.23 0.22 -1.74 16 18 C -0.07 -0.92 9.69 22.33 0.22 -0.70 16 19 C -0.12 -2.18 5.34 -19.90 -0.11 -2.28 16 20 C 0.17 1.92 6.67 85.64 0.57 2.49 16 21 N -0.38 -6.74 3.68 -355.80 -1.31 -8.05 16 22 C 0.26 3.68 12.63 180.36 2.28 5.96 16 23 N -0.58 -12.90 11.19 -204.00 -2.28 -15.18 16 24 C 0.19 4.68 13.03 180.77 2.36 7.04 16 25 N -0.35 -9.78 12.56 -61.24 -0.77 -10.55 16 26 C -0.05 -1.40 9.32 22.53 0.21 -1.19 16 27 C 0.09 3.44 5.22 86.57 0.45 3.89 16 28 C 0.17 8.23 5.51 86.57 0.48 8.71 16 29 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 30 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 31 H 0.08 3.19 7.94 -2.39 -0.02 3.17 16 32 H 0.09 3.20 6.99 -2.39 -0.02 3.18 16 33 H 0.08 2.80 8.14 -2.38 -0.02 2.78 16 34 H 0.14 2.96 6.84 -2.91 -0.02 2.94 16 35 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 36 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 37 H 0.17 -0.03 8.03 -2.39 -0.02 -0.05 16 38 H 0.10 1.15 8.08 -2.39 -0.02 1.13 16 39 H 0.27 0.26 8.06 -2.91 -0.02 0.24 16 40 H 0.22 4.72 8.06 -2.91 -0.02 4.69 16 41 H 0.11 3.32 8.06 -2.91 -0.02 3.30 16 42 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 43 H 0.10 3.22 4.77 -2.39 -0.01 3.21 16 44 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 45 H 0.07 3.45 6.43 -2.39 -0.02 3.43 16 Total: -1.00 -82.89 375.18 4.14 -78.75 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 1.01 Total: 14.64 kcal Atomic # 6 Polarization: 22.65 SS G_CDS: 9.73 Total: 32.38 kcal Atomic # 7 Polarization: -137.33 SS G_CDS: -8.57 Total: -145.90 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.06 Total: -25.54 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -82.89 4.14 -78.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599538828.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.223 kcal (2) G-P(sol) polarization free energy of solvation -82.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds