Wall clock time and date at job start Sat Apr 11 2020 06:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00360 * 2 1 4 4 H 1.48498 * 109.47305 * 239.99601 * 3 2 1 5 5 H 1.48502 * 109.46994 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47595 * 119.99101 * 3 2 1 7 7 C 1.37881 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99835 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00071 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47056 * 180.02562 * 9 7 2 11 11 C 1.46903 * 110.99858 * 170.00021 * 10 9 7 12 12 C 1.53242 * 109.33888 * 187.25056 * 11 10 9 13 13 N 1.47082 * 108.52236 * 306.17358 * 12 11 10 14 14 C 1.34776 * 120.87760 * 231.18665 * 13 12 11 15 15 O 1.21554 * 120.00196 * 4.86194 * 14 13 12 16 16 C 1.47867 * 120.00141 * 184.85652 * 14 13 12 17 17 C 1.39663 * 120.08221 * 35.18613 * 16 14 13 18 18 C 1.38010 * 120.09227 * 180.25848 * 17 16 14 19 19 C 1.38169 * 120.27682 * 359.44803 * 18 17 16 20 20 C 1.39407 * 120.16544 * 0.27666 * 19 18 17 21 21 C 1.48429 * 120.04515 * 179.97438 * 20 19 18 22 22 N 1.33970 * 125.64666 * 179.68988 * 21 20 19 23 23 C 1.30685 * 109.77714 * 179.85695 * 22 21 20 24 24 N 1.34522 * 108.29240 * 0.40922 * 23 22 21 25 25 H 0.97004 * 126.74465 * 179.78587 * 24 23 22 26 26 N 1.31494 * 125.64890 * 0.02562 * 21 20 19 27 27 C 1.39089 * 119.90587 * 0.02562 * 20 19 18 28 28 C 1.47079 * 118.23927 * 51.45498 * 13 12 11 29 29 C 1.46902 * 110.99776 * 294.30010 * 10 9 7 30 30 H 0.96996 * 119.99712 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.47068 * 60.00109 * 9 7 2 32 32 H 1.09004 * 109.47206 * 299.99920 * 9 7 2 33 33 H 1.08997 * 109.49091 * 67.29171 * 11 10 9 34 34 H 1.08995 * 109.51311 * 307.21935 * 11 10 9 35 35 H 1.08999 * 109.62845 * 186.46001 * 12 11 10 36 36 H 1.09000 * 109.62966 * 65.87838 * 12 11 10 37 37 H 1.07999 * 119.95397 * 359.97438 * 17 16 14 38 38 H 1.08000 * 119.86272 * 179.72608 * 18 17 16 39 39 H 1.08002 * 119.91226 * 180.25538 * 19 18 17 40 40 H 1.07995 * 125.85396 * 180.14188 * 23 22 21 41 41 H 1.08002 * 120.13824 * 179.97438 * 27 20 19 42 42 H 1.09000 * 109.62854 * 68.25580 * 28 13 12 43 43 H 1.08997 * 109.62633 * 188.83987 * 28 13 12 44 44 H 1.08995 * 109.49378 * 292.70609 * 29 10 9 45 45 H 1.08994 * 109.49439 * 52.79060 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0018 11 6 1.5208 -4.8934 0.2400 12 6 2.5633 -6.0031 0.4140 13 7 3.4620 -5.9866 -0.7502 14 6 3.7128 -7.1130 -1.4464 15 8 3.1265 -8.1414 -1.1703 16 6 4.7011 -7.0979 -2.5461 17 6 5.8421 -6.2981 -2.4510 18 6 6.7620 -6.2798 -3.4797 19 6 6.5663 -7.0598 -4.6032 20 6 5.4343 -7.8667 -4.7073 21 6 5.2265 -8.7031 -5.9157 22 7 4.1870 -9.5206 -6.1301 23 6 4.3148 -10.1028 -7.2931 24 7 5.4586 -9.6741 -7.8565 25 1 5.8151 -9.9380 -8.7192 26 7 6.0352 -8.7692 -6.9504 27 6 4.4994 -7.8860 -3.6777 28 6 4.0845 -4.7095 -1.1308 29 6 2.9776 -3.6497 -1.2476 30 1 -0.4849 0.8400 -0.0004 31 1 0.6247 -2.5571 -0.8897 32 1 0.6240 -2.5567 0.8903 33 1 0.8799 -5.1266 -0.6103 34 1 0.9148 -4.8189 1.1428 35 1 2.0626 -6.9693 0.4765 36 1 3.1383 -5.8260 1.3229 37 1 6.0024 -5.6896 -1.5733 38 1 7.6408 -5.6565 -3.4042 39 1 7.2921 -7.0441 -5.4029 40 1 3.6230 -10.8103 -7.7257 41 1 3.6208 -8.5094 -3.7546 42 1 4.8029 -4.4106 -0.3675 43 1 4.5900 -4.8202 -2.0901 44 1 2.3163 -3.9002 -2.0770 45 1 3.4282 -2.6729 -1.4233 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602204775.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:48 Heat of formation + Delta-G solvation = 104.031613 kcal Electronic energy + Delta-G solvation = -28626.133137 eV Core-core repulsion = 24646.024693 eV Total energy + Delta-G solvation = -3980.108444 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 6.06 seconds Orbital eigenvalues (eV) -42.42978 -40.50165 -38.64953 -37.37410 -34.54832 -33.55868 -32.54580 -32.18797 -31.37918 -30.86731 -29.97032 -28.22302 -25.75602 -24.44634 -23.92521 -22.99115 -22.94258 -21.78173 -21.07776 -20.32691 -19.06724 -18.68802 -17.07395 -16.65449 -16.38737 -16.07633 -15.85352 -15.55255 -15.16398 -14.84850 -14.73527 -14.46985 -14.37022 -13.89574 -13.62962 -13.60839 -13.49612 -13.14079 -12.66877 -12.58135 -12.28785 -11.89101 -11.85306 -11.53345 -11.27817 -11.10531 -10.98074 -10.78915 -10.73522 -10.56582 -10.54324 -10.47432 -10.34068 -9.90222 -9.71807 -9.29456 -9.15980 -8.77558 -8.50401 -8.41706 -7.32233 -6.05855 -4.08009 0.48038 0.92102 1.41406 2.20840 2.49189 2.91087 3.10696 3.31053 3.35819 3.37856 3.59168 3.70810 4.18473 4.38757 4.43685 4.53241 4.73571 4.80935 4.85941 4.98969 5.23659 5.28391 5.31793 5.38435 5.41501 5.56776 5.64833 5.66656 5.76705 5.80199 5.82173 5.88459 6.03618 6.13000 6.15522 6.19243 6.30391 6.45740 6.48852 6.57079 6.59547 6.70484 7.22597 7.29125 7.52838 7.63368 7.74134 8.01892 8.12531 8.23982 8.47777 8.98769 9.56364 11.04935 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014851 B = 0.002362 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.967362 B =11853.560854 C =12505.459180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.536 5.536 11 C 0.040 3.960 12 C 0.119 3.881 13 N -0.601 5.601 14 C 0.559 3.441 15 O -0.542 6.542 16 C -0.130 4.130 17 C -0.073 4.073 18 C -0.130 4.130 19 C -0.063 4.063 20 C -0.029 4.029 21 C 0.275 3.725 22 N -0.532 5.532 23 C 0.267 3.733 24 N -0.485 5.485 25 H 0.443 0.557 26 N -0.307 5.307 27 C -0.020 4.020 28 C 0.096 3.904 29 C 0.050 3.950 30 H 0.262 0.738 31 H -0.009 1.009 32 H 0.032 0.968 33 H 0.027 0.973 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.142 0.858 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.226 0.774 41 H 0.145 0.855 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.026 0.974 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.172 -18.508 -13.659 26.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.549 4.549 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.261 5.261 11 C -0.089 4.089 12 C -0.004 4.004 13 N -0.333 5.333 14 C 0.347 3.653 15 O -0.421 6.421 16 C -0.133 4.133 17 C -0.092 4.092 18 C -0.148 4.148 19 C -0.083 4.083 20 C -0.032 4.032 21 C -0.004 4.004 22 N -0.260 5.260 23 C -0.032 4.032 24 N -0.203 5.203 25 H 0.289 0.711 26 N -0.136 5.136 27 C -0.041 4.041 28 C -0.027 4.027 29 C -0.080 4.080 30 H 0.072 0.928 31 H 0.009 0.991 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.159 0.841 38 H 0.155 0.845 39 H 0.152 0.848 40 H 0.242 0.758 41 H 0.162 0.838 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.044 0.956 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 13.365 -18.503 -12.930 26.233 hybrid contribution -0.207 0.538 -1.502 1.609 sum 13.158 -17.965 -14.432 26.536 Atomic orbital electron populations 1.69947 1.06097 1.26966 1.50663 1.24999 0.94865 0.99350 0.95379 0.86552 0.79431 0.82732 0.78635 1.20263 1.21392 1.20130 1.21094 0.93406 0.89867 1.50486 0.91848 1.19723 0.90012 0.87148 0.96240 1.62100 1.28040 1.02728 1.33208 1.22407 0.94971 0.90506 1.01016 1.21797 0.91706 0.99710 0.87145 1.48111 1.46615 1.08333 1.30227 1.18243 0.81956 0.83403 0.81688 1.90762 1.51133 1.31666 1.68505 1.19844 0.96902 1.00519 0.96052 1.21773 0.92572 0.95538 0.99348 1.21046 0.99975 1.00228 0.93514 1.21344 0.95590 0.93486 0.97892 1.17291 0.96826 0.98305 0.90789 1.22259 0.89037 0.95431 0.93693 1.70574 1.25870 1.12960 1.16556 1.26152 0.89317 0.97795 0.89982 1.48121 1.18637 1.34434 1.19142 0.71118 1.78202 1.21282 1.12202 1.01926 1.21215 0.98148 0.94641 0.90054 1.22608 0.96578 0.82546 1.00944 1.22433 0.95107 0.98972 0.91454 0.92811 0.99104 0.95013 0.95441 0.89985 0.89229 0.90710 0.84054 0.84522 0.84803 0.75786 0.83760 0.90303 0.89038 0.95591 0.88424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.51 -13.80 8.41 -34.44 -0.29 -14.09 16 8 H 0.06 1.67 7.13 -52.49 -0.37 1.29 16 9 C 0.19 4.91 4.72 -4.98 -0.02 4.89 16 10 N -0.54 -11.07 4.62 -235.47 -1.09 -12.16 16 11 C 0.04 0.73 5.62 -3.70 -0.02 0.71 16 12 C 0.12 1.86 6.61 -3.60 -0.02 1.83 16 13 N -0.60 -9.24 3.00 -173.28 -0.52 -9.76 16 14 C 0.56 8.91 7.40 -12.32 -0.09 8.82 16 15 O -0.54 -10.21 16.27 5.32 0.09 -10.13 16 16 C -0.13 -1.74 5.31 -105.01 -0.56 -2.30 16 17 C -0.07 -0.78 7.37 -39.13 -0.29 -1.06 16 18 C -0.13 -1.17 10.02 -39.69 -0.40 -1.57 16 19 C -0.06 -0.63 9.68 -39.17 -0.38 -1.01 16 20 C -0.03 -0.36 5.87 -104.95 -0.62 -0.97 16 21 C 0.28 3.33 7.77 -156.62 -1.22 2.11 16 22 N -0.53 -6.06 10.82 -12.38 -0.13 -6.20 16 23 C 0.27 1.75 13.11 -90.69 -1.19 0.57 16 24 N -0.48 -3.09 7.44 29.52 0.22 -2.87 16 25 H 0.44 0.99 8.96 -182.34 -1.63 -0.64 16 26 N -0.31 -3.26 12.42 32.10 0.40 -2.86 16 27 C -0.02 -0.26 9.24 -38.85 -0.36 -0.62 16 28 C 0.10 1.36 4.94 -3.36 -0.02 1.34 16 29 C 0.05 0.90 5.47 -3.46 -0.02 0.88 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 31 H -0.01 -0.24 8.12 -51.93 -0.42 -0.67 16 32 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 1.42 7.99 -51.93 -0.41 1.01 16 35 H 0.09 1.40 7.04 -51.93 -0.37 1.03 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.14 1.32 5.93 -52.49 -0.31 1.00 16 38 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 39 H 0.13 1.16 7.82 -52.49 -0.41 0.75 16 40 H 0.23 0.28 8.06 -52.49 -0.42 -0.14 16 41 H 0.14 2.10 7.77 -52.49 -0.41 1.69 16 42 H 0.08 1.04 8.00 -51.93 -0.42 0.62 16 43 H 0.09 1.11 4.55 -51.93 -0.24 0.88 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.10 1.87 6.67 -51.93 -0.35 1.52 16 LS Contribution 372.51 15.07 5.61 5.61 Total: -1.00 -35.84 372.51 -12.30 -48.13 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -7.00 Total: -1.25 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -5.59 Total: 0.96 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: -0.39 Total: -59.40 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.84 -12.30 -48.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602204775.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.164 kcal (2) G-P(sol) polarization free energy of solvation -35.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.07 seconds